Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15755

Experiment: cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS15745 and BBR_RS15750 are separated by 23 nucleotidesBBR_RS15750 and BBR_RS15755 are separated by 50 nucleotidesBBR_RS15755 and BBR_RS15760 are separated by 116 nucleotidesBBR_RS15760 and BBR_RS15765 are separated by 78 nucleotides BBR_RS15745: BBR_RS15745 - hydrolase or phosphatase, at 1,303,160 to 1,303,879 _RS15745 BBR_RS15750: BBR_RS15750 - hypothetical protein, at 1,303,903 to 1,304,127 _RS15750 BBR_RS15755: BBR_RS15755 - hypothetical protein, at 1,304,178 to 1,304,585 _RS15755 BBR_RS15760: BBR_RS15760 - MerR family transcriptional regulator, at 1,304,702 to 1,305,334 _RS15760 BBR_RS15765: BBR_RS15765 - FHA domain-containing protein, at 1,305,413 to 1,305,856 _RS15765 Position (kb) 1304 1305Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1303.259 kb on + strand, within BBR_RS15745at 1303.636 kb on + strand, within BBR_RS15745at 1303.680 kb on + strand, within BBR_RS15745at 1303.685 kb on + strand, within BBR_RS15745at 1303.698 kb on - strand, within BBR_RS15745at 1303.698 kb on - strand, within BBR_RS15745at 1303.741 kb on + strand, within BBR_RS15745at 1303.749 kb on - strand, within BBR_RS15745at 1303.830 kb on + strandat 1304.099 kb on - strand, within BBR_RS15750at 1304.122 kb on + strandat 1304.130 kb on - strandat 1304.210 kb on + strandat 1304.269 kb on - strand, within BBR_RS15755at 1304.320 kb on - strand, within BBR_RS15755at 1304.501 kb on - strand, within BBR_RS15755at 1304.581 kb on - strandat 1304.583 kb on - strandat 1304.609 kb on - strandat 1304.709 kb on + strandat 1304.839 kb on - strand, within BBR_RS15760at 1304.879 kb on + strand, within BBR_RS15760at 1304.950 kb on - strand, within BBR_RS15760at 1305.003 kb on - strand, within BBR_RS15760at 1305.045 kb on + strand, within BBR_RS15760at 1305.053 kb on - strand, within BBR_RS15760at 1305.293 kb on - strandat 1305.332 kb on + strandat 1305.397 kb on - strandat 1305.397 kb on - strandat 1305.420 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
remove
1,303,259 + BBR_RS15745 0.14 +1.4
1,303,636 + BBR_RS15745 0.66 +0.6
1,303,680 + BBR_RS15745 0.72 -0.5
1,303,685 + BBR_RS15745 0.73 -0.1
1,303,698 - BBR_RS15745 0.75 +0.0
1,303,698 - BBR_RS15745 0.75 -0.5
1,303,741 + BBR_RS15745 0.81 -0.7
1,303,749 - BBR_RS15745 0.82 -0.3
1,303,830 + -1.0
1,304,099 - BBR_RS15750 0.87 +3.1
1,304,122 + +3.5
1,304,130 - +0.4
1,304,210 + -1.2
1,304,269 - BBR_RS15755 0.22 +0.3
1,304,320 - BBR_RS15755 0.35 -2.5
1,304,501 - BBR_RS15755 0.79 -1.1
1,304,581 - +2.6
1,304,583 - +0.0
1,304,609 - -0.4
1,304,709 + +0.8
1,304,839 - BBR_RS15760 0.22 -0.2
1,304,879 + BBR_RS15760 0.28 -2.4
1,304,950 - BBR_RS15760 0.39 -2.8
1,305,003 - BBR_RS15760 0.48 +0.3
1,305,045 + BBR_RS15760 0.54 -1.2
1,305,053 - BBR_RS15760 0.55 -3.3
1,305,293 - -0.5
1,305,332 + -2.4
1,305,397 - +0.8
1,305,397 - +3.1
1,305,420 - +0.2

Or see this region's nucleotide sequence