Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14160

Experiment: cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS14155 and BBR_RS14160 are separated by 60 nucleotidesBBR_RS14160 and BBR_RS14165 are separated by 97 nucleotidesBBR_RS14165 and BBR_RS14170 are separated by 84 nucleotides BBR_RS14155: BBR_RS14155 - L-serine ammonia-lyase, at 950,947 to 952,404 _RS14155 BBR_RS14160: BBR_RS14160 - peptidylprolyl isomerase, at 952,465 to 952,872 _RS14160 BBR_RS14165: BBR_RS14165 - transcription elongation factor GreA, at 952,970 to 953,449 _RS14165 BBR_RS14170: BBR_RS14170 - hemolysin III, at 953,534 to 954,454 _RS14170 Position (kb) 952 953Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 951.481 kb on - strand, within BBR_RS14155at 951.510 kb on + strand, within BBR_RS14155at 951.518 kb on - strand, within BBR_RS14155at 951.621 kb on + strand, within BBR_RS14155at 951.621 kb on + strand, within BBR_RS14155at 951.659 kb on - strand, within BBR_RS14155at 951.678 kb on - strand, within BBR_RS14155at 951.697 kb on + strand, within BBR_RS14155at 951.737 kb on + strand, within BBR_RS14155at 951.751 kb on + strand, within BBR_RS14155at 951.755 kb on - strand, within BBR_RS14155at 951.796 kb on - strand, within BBR_RS14155at 951.827 kb on + strand, within BBR_RS14155at 951.827 kb on + strand, within BBR_RS14155at 951.868 kb on + strand, within BBR_RS14155at 951.872 kb on - strand, within BBR_RS14155at 951.912 kb on + strand, within BBR_RS14155at 951.915 kb on + strand, within BBR_RS14155at 951.992 kb on + strand, within BBR_RS14155at 951.992 kb on + strand, within BBR_RS14155at 952.022 kb on - strand, within BBR_RS14155at 952.065 kb on + strand, within BBR_RS14155at 952.091 kb on + strand, within BBR_RS14155at 952.129 kb on - strand, within BBR_RS14155at 952.160 kb on + strand, within BBR_RS14155at 952.174 kb on - strand, within BBR_RS14155at 952.178 kb on + strand, within BBR_RS14155at 952.178 kb on + strand, within BBR_RS14155at 952.191 kb on + strand, within BBR_RS14155at 952.260 kb on + strandat 952.260 kb on + strandat 952.269 kb on - strandat 952.308 kb on + strandat 952.352 kb on + strandat 952.537 kb on + strand, within BBR_RS14160at 952.537 kb on + strand, within BBR_RS14160at 952.566 kb on + strand, within BBR_RS14160at 952.572 kb on + strand, within BBR_RS14160at 952.572 kb on + strand, within BBR_RS14160at 952.615 kb on + strand, within BBR_RS14160at 952.640 kb on + strand, within BBR_RS14160at 952.671 kb on + strand, within BBR_RS14160at 953.475 kb on - strandat 953.492 kb on - strandat 953.725 kb on + strand, within BBR_RS14170at 953.750 kb on + strand, within BBR_RS14170at 953.765 kb on - strand, within BBR_RS14170at 953.787 kb on + strand, within BBR_RS14170at 953.797 kb on + strand, within BBR_RS14170at 953.822 kb on + strand, within BBR_RS14170at 953.830 kb on - strand, within BBR_RS14170at 953.854 kb on - strand, within BBR_RS14170at 953.856 kb on + strand, within BBR_RS14170at 953.865 kb on - strand, within BBR_RS14170

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Per-strain Table

Position Strand Gene LocusTag Fraction cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
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951,481 - BBR_RS14155 0.37 +2.6
951,510 + BBR_RS14155 0.39 -3.0
951,518 - BBR_RS14155 0.39 -0.4
951,621 + BBR_RS14155 0.46 -0.5
951,621 + BBR_RS14155 0.46 -1.0
951,659 - BBR_RS14155 0.49 -1.5
951,678 - BBR_RS14155 0.50 -1.8
951,697 + BBR_RS14155 0.51 -0.8
951,737 + BBR_RS14155 0.54 -0.6
951,751 + BBR_RS14155 0.55 -0.5
951,755 - BBR_RS14155 0.55 -0.2
951,796 - BBR_RS14155 0.58 -1.3
951,827 + BBR_RS14155 0.60 +0.4
951,827 + BBR_RS14155 0.60 -1.3
951,868 + BBR_RS14155 0.63 -1.6
951,872 - BBR_RS14155 0.63 -1.9
951,912 + BBR_RS14155 0.66 -1.3
951,915 + BBR_RS14155 0.66 +0.8
951,992 + BBR_RS14155 0.72 +0.1
951,992 + BBR_RS14155 0.72 -2.0
952,022 - BBR_RS14155 0.74 +2.9
952,065 + BBR_RS14155 0.77 -0.6
952,091 + BBR_RS14155 0.78 -0.4
952,129 - BBR_RS14155 0.81 +0.0
952,160 + BBR_RS14155 0.83 -1.3
952,174 - BBR_RS14155 0.84 +0.4
952,178 + BBR_RS14155 0.84 -1.1
952,178 + BBR_RS14155 0.84 +1.2
952,191 + BBR_RS14155 0.85 -0.5
952,260 + -2.3
952,260 + -0.7
952,269 - -0.3
952,308 + -2.0
952,352 + +0.2
952,537 + BBR_RS14160 0.18 +3.0
952,537 + BBR_RS14160 0.18 +2.9
952,566 + BBR_RS14160 0.25 +1.0
952,572 + BBR_RS14160 0.26 +0.7
952,572 + BBR_RS14160 0.26 +3.3
952,615 + BBR_RS14160 0.37 +1.0
952,640 + BBR_RS14160 0.43 +3.1
952,671 + BBR_RS14160 0.50 -1.1
953,475 - +0.5
953,492 - -0.4
953,725 + BBR_RS14170 0.21 -0.0
953,750 + BBR_RS14170 0.23 +0.2
953,765 - BBR_RS14170 0.25 -1.3
953,787 + BBR_RS14170 0.27 +1.1
953,797 + BBR_RS14170 0.29 +0.0
953,822 + BBR_RS14170 0.31 +0.6
953,830 - BBR_RS14170 0.32 -0.6
953,854 - BBR_RS14170 0.35 -0.8
953,856 + BBR_RS14170 0.35 -0.3
953,865 - BBR_RS14170 0.36 +0.8

Or see this region's nucleotide sequence