Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13905

Experiment: cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13900 and BBR_RS13905 are separated by 28 nucleotidesBBR_RS13905 and BBR_RS13910 overlap by 4 nucleotidesBBR_RS13910 and BBR_RS13915 are separated by 155 nucleotides BBR_RS13900: BBR_RS13900 - acetylornithine transaminase, at 898,346 to 899,641 _RS13900 BBR_RS13905: BBR_RS13905 - ornithine carbamoyltransferase, at 899,670 to 900,635 _RS13905 BBR_RS13910: BBR_RS13910 - arginine repressor, at 900,632 to 901,144 _RS13910 BBR_RS13915: BBR_RS13915 - argininosuccinate synthase, at 901,300 to 902,538 _RS13915 Position (kb) 899 900 901Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 898.671 kb on + strand, within BBR_RS13900at 898.735 kb on + strand, within BBR_RS13900at 898.758 kb on + strand, within BBR_RS13900at 898.758 kb on + strand, within BBR_RS13900at 898.763 kb on + strand, within BBR_RS13900at 898.788 kb on + strand, within BBR_RS13900at 898.871 kb on + strand, within BBR_RS13900at 898.871 kb on + strand, within BBR_RS13900at 898.925 kb on + strand, within BBR_RS13900at 898.938 kb on - strand, within BBR_RS13900at 898.938 kb on - strand, within BBR_RS13900at 899.010 kb on - strand, within BBR_RS13900at 899.044 kb on + strand, within BBR_RS13900at 899.102 kb on + strand, within BBR_RS13900at 899.102 kb on + strand, within BBR_RS13900at 899.178 kb on + strand, within BBR_RS13900at 899.180 kb on + strand, within BBR_RS13900at 899.180 kb on + strand, within BBR_RS13900at 899.255 kb on + strand, within BBR_RS13900at 899.255 kb on + strand, within BBR_RS13900at 899.279 kb on + strand, within BBR_RS13900at 899.287 kb on - strand, within BBR_RS13900at 899.417 kb on + strand, within BBR_RS13900at 899.424 kb on + strand, within BBR_RS13900at 899.424 kb on + strand, within BBR_RS13900at 899.430 kb on - strand, within BBR_RS13900at 899.430 kb on - strand, within BBR_RS13900at 899.439 kb on + strand, within BBR_RS13900at 899.439 kb on + strand, within BBR_RS13900at 899.449 kb on + strand, within BBR_RS13900at 899.457 kb on + strand, within BBR_RS13900at 899.474 kb on + strand, within BBR_RS13900at 899.489 kb on + strand, within BBR_RS13900at 899.489 kb on + strand, within BBR_RS13900at 899.505 kb on - strand, within BBR_RS13900at 899.535 kb on + strandat 899.550 kb on + strandat 899.672 kb on + strandat 899.674 kb on + strandat 899.674 kb on + strandat 899.674 kb on + strandat 899.674 kb on + strandat 899.748 kb on + strandat 899.925 kb on + strand, within BBR_RS13905at 899.930 kb on + strand, within BBR_RS13905at 899.934 kb on + strand, within BBR_RS13905at 899.934 kb on + strand, within BBR_RS13905at 900.017 kb on + strand, within BBR_RS13905at 900.073 kb on + strand, within BBR_RS13905at 900.089 kb on + strand, within BBR_RS13905at 900.145 kb on + strand, within BBR_RS13905at 900.248 kb on + strand, within BBR_RS13905at 900.298 kb on + strand, within BBR_RS13905at 900.310 kb on + strand, within BBR_RS13905at 900.310 kb on + strand, within BBR_RS13905at 900.410 kb on + strand, within BBR_RS13905at 900.418 kb on - strand, within BBR_RS13905at 900.425 kb on + strand, within BBR_RS13905at 900.425 kb on + strand, within BBR_RS13905at 900.539 kb on + strandat 900.540 kb on + strandat 900.826 kb on + strand, within BBR_RS13910at 900.932 kb on + strand, within BBR_RS13910at 900.985 kb on + strand, within BBR_RS13910at 901.159 kb on + strandat 901.167 kb on - strandat 901.171 kb on + strandat 901.179 kb on - strandat 901.190 kb on - strandat 901.205 kb on + strandat 901.213 kb on - strandat 901.316 kb on + strandat 901.326 kb on + strandat 901.329 kb on - strandat 901.339 kb on + strandat 901.339 kb on - strandat 901.417 kb on + strandat 901.417 kb on + strandat 901.417 kb on + strandat 901.417 kb on + strandat 901.417 kb on + strandat 901.441 kb on - strand, within BBR_RS13915at 901.442 kb on + strand, within BBR_RS13915at 901.442 kb on + strand, within BBR_RS13915at 901.442 kb on - strand, within BBR_RS13915at 901.489 kb on + strand, within BBR_RS13915at 901.539 kb on + strand, within BBR_RS13915at 901.539 kb on + strand, within BBR_RS13915at 901.567 kb on + strand, within BBR_RS13915at 901.573 kb on - strand, within BBR_RS13915at 901.606 kb on + strand, within BBR_RS13915at 901.629 kb on - strand, within BBR_RS13915

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Per-strain Table

Position Strand Gene LocusTag Fraction cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
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898,671 + BBR_RS13900 0.25 -0.8
898,735 + BBR_RS13900 0.30 +0.2
898,758 + BBR_RS13900 0.32 +3.0
898,758 + BBR_RS13900 0.32 +2.9
898,763 + BBR_RS13900 0.32 -2.8
898,788 + BBR_RS13900 0.34 -2.2
898,871 + BBR_RS13900 0.41 -0.3
898,871 + BBR_RS13900 0.41 -0.4
898,925 + BBR_RS13900 0.45 -0.7
898,938 - BBR_RS13900 0.46 -0.7
898,938 - BBR_RS13900 0.46 +0.1
899,010 - BBR_RS13900 0.51 +0.3
899,044 + BBR_RS13900 0.54 +0.8
899,102 + BBR_RS13900 0.58 -1.4
899,102 + BBR_RS13900 0.58 -0.6
899,178 + BBR_RS13900 0.64 +0.8
899,180 + BBR_RS13900 0.64 -0.0
899,180 + BBR_RS13900 0.64 +0.6
899,255 + BBR_RS13900 0.70 -1.3
899,255 + BBR_RS13900 0.70 +0.6
899,279 + BBR_RS13900 0.72 +0.4
899,287 - BBR_RS13900 0.73 +3.0
899,417 + BBR_RS13900 0.83 +0.5
899,424 + BBR_RS13900 0.83 -0.8
899,424 + BBR_RS13900 0.83 -1.0
899,430 - BBR_RS13900 0.84 +0.6
899,430 - BBR_RS13900 0.84 -1.6
899,439 + BBR_RS13900 0.84 +0.3
899,439 + BBR_RS13900 0.84 +0.3
899,449 + BBR_RS13900 0.85 -0.3
899,457 + BBR_RS13900 0.86 -0.4
899,474 + BBR_RS13900 0.87 -0.3
899,489 + BBR_RS13900 0.88 -0.1
899,489 + BBR_RS13900 0.88 +0.9
899,505 - BBR_RS13900 0.89 -1.8
899,535 + +0.1
899,550 + +3.3
899,672 + -1.4
899,674 + -1.8
899,674 + -1.1
899,674 + -3.5
899,674 + -1.0
899,748 + -1.9
899,925 + BBR_RS13905 0.26 +1.2
899,930 + BBR_RS13905 0.27 -3.0
899,934 + BBR_RS13905 0.27 -1.3
899,934 + BBR_RS13905 0.27 -1.8
900,017 + BBR_RS13905 0.36 -0.7
900,073 + BBR_RS13905 0.42 -3.1
900,089 + BBR_RS13905 0.43 -0.9
900,145 + BBR_RS13905 0.49 -3.5
900,248 + BBR_RS13905 0.60 -2.0
900,298 + BBR_RS13905 0.65 -0.9
900,310 + BBR_RS13905 0.66 -1.8
900,310 + BBR_RS13905 0.66 +1.1
900,410 + BBR_RS13905 0.77 -0.6
900,418 - BBR_RS13905 0.77 -0.4
900,425 + BBR_RS13905 0.78 -1.8
900,425 + BBR_RS13905 0.78 -0.5
900,539 + -1.3
900,540 + -3.4
900,826 + BBR_RS13910 0.38 -0.9
900,932 + BBR_RS13910 0.58 -0.2
900,985 + BBR_RS13910 0.69 -0.5
901,159 + +1.3
901,167 - +3.3
901,171 + -2.4
901,179 - +1.8
901,190 - -0.1
901,205 + -0.1
901,213 - -0.7
901,316 + -0.5
901,326 + +0.4
901,329 - -0.4
901,339 + +0.9
901,339 - +0.7
901,417 + -0.4
901,417 + +0.9
901,417 + -0.5
901,417 + -0.2
901,417 + +1.9
901,441 - BBR_RS13915 0.11 -0.3
901,442 + BBR_RS13915 0.11 +1.1
901,442 + BBR_RS13915 0.11 +0.8
901,442 - BBR_RS13915 0.11 +0.5
901,489 + BBR_RS13915 0.15 -1.4
901,539 + BBR_RS13915 0.19 +0.1
901,539 + BBR_RS13915 0.19 +0.8
901,567 + BBR_RS13915 0.22 -0.6
901,573 - BBR_RS13915 0.22 -0.1
901,606 + BBR_RS13915 0.25 +0.5
901,629 - BBR_RS13915 0.27 -0.5

Or see this region's nucleotide sequence