Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13580

Experiment: cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS20785 and BBR_RS13575 are separated by 39 nucleotidesBBR_RS13575 and BBR_RS13580 are separated by 9 nucleotidesBBR_RS13580 and BBR_RS13585 are separated by 167 nucleotides BBR_RS20785: BBR_RS20785 - PadR family transcriptional regulator, at 817,341 to 817,487 _RS20785 BBR_RS13575: BBR_RS13575 - sugar O-acetyltransferase, at 817,527 to 818,201 _RS13575 BBR_RS13580: BBR_RS13580 - nodulation protein L, at 818,211 to 818,474 _RS13580 BBR_RS13585: BBR_RS13585 - transporter, at 818,642 to 819,712 _RS13585 Position (kb) 818 819Strain fitness (log2 ratio) -2 -1 0 1 2 3at 817.226 kb on + strandat 817.226 kb on + strandat 817.226 kb on + strandat 817.226 kb on + strandat 817.313 kb on - strandat 817.371 kb on - strand, within BBR_RS20785at 817.371 kb on - strand, within BBR_RS20785at 817.603 kb on + strand, within BBR_RS13575at 817.700 kb on - strand, within BBR_RS13575at 817.755 kb on + strand, within BBR_RS13575at 817.755 kb on + strand, within BBR_RS13575at 817.763 kb on - strand, within BBR_RS13575at 817.793 kb on + strand, within BBR_RS13575at 817.810 kb on - strand, within BBR_RS13575at 817.852 kb on - strand, within BBR_RS13575at 817.852 kb on - strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.927 kb on + strand, within BBR_RS13575at 817.968 kb on + strand, within BBR_RS13575at 817.998 kb on - strand, within BBR_RS13575at 818.028 kb on + strand, within BBR_RS13575at 818.043 kb on + strand, within BBR_RS13575at 818.116 kb on - strand, within BBR_RS13575at 818.116 kb on - strand, within BBR_RS13575at 818.163 kb on + strandat 818.191 kb on + strandat 818.191 kb on + strandat 818.201 kb on - strandat 818.299 kb on - strand, within BBR_RS13580at 818.317 kb on + strand, within BBR_RS13580at 818.317 kb on + strand, within BBR_RS13580at 818.319 kb on + strand, within BBR_RS13580at 818.336 kb on - strand, within BBR_RS13580at 818.401 kb on - strand, within BBR_RS13580at 818.407 kb on + strand, within BBR_RS13580at 818.424 kb on + strand, within BBR_RS13580at 818.429 kb on + strand, within BBR_RS13580at 818.443 kb on + strand, within BBR_RS13580at 818.447 kb on + strand, within BBR_RS13580at 818.451 kb on - strandat 818.451 kb on - strandat 818.475 kb on - strandat 818.475 kb on - strandat 818.537 kb on - strandat 818.537 kb on - strandat 818.573 kb on + strandat 818.576 kb on - strandat 818.581 kb on - strandat 818.581 kb on - strandat 818.648 kb on - strandat 818.710 kb on - strandat 818.712 kb on - strandat 818.757 kb on + strand, within BBR_RS13585at 818.762 kb on + strand, within BBR_RS13585at 818.770 kb on + strand, within BBR_RS13585at 818.770 kb on - strand, within BBR_RS13585at 818.823 kb on + strand, within BBR_RS13585at 818.889 kb on - strand, within BBR_RS13585at 818.920 kb on + strand, within BBR_RS13585at 818.920 kb on + strand, within BBR_RS13585at 818.920 kb on + strand, within BBR_RS13585at 819.043 kb on - strand, within BBR_RS13585at 819.064 kb on + strand, within BBR_RS13585at 819.064 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.078 kb on + strand, within BBR_RS13585at 819.086 kb on - strand, within BBR_RS13585at 819.086 kb on - strand, within BBR_RS13585at 819.086 kb on - strand, within BBR_RS13585at 819.312 kb on + strand, within BBR_RS13585at 819.320 kb on - strand, within BBR_RS13585at 819.342 kb on - strand, within BBR_RS13585at 819.342 kb on - strand, within BBR_RS13585at 819.415 kb on + strand, within BBR_RS13585at 819.425 kb on - strand, within BBR_RS13585at 819.425 kb on - strand, within BBR_RS13585at 819.447 kb on + strand, within BBR_RS13585at 819.447 kb on + strand, within BBR_RS13585

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Per-strain Table

Position Strand Gene LocusTag Fraction cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
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817,226 + -1.0
817,226 + -0.9
817,226 + -0.1
817,226 + -0.2
817,313 - -0.5
817,371 - BBR_RS20785 0.20 -1.0
817,371 - BBR_RS20785 0.20 +0.2
817,603 + BBR_RS13575 0.11 +1.3
817,700 - BBR_RS13575 0.26 -1.6
817,755 + BBR_RS13575 0.34 -0.1
817,755 + BBR_RS13575 0.34 +0.6
817,763 - BBR_RS13575 0.35 +3.5
817,793 + BBR_RS13575 0.39 -0.3
817,810 - BBR_RS13575 0.42 +0.8
817,852 - BBR_RS13575 0.48 +0.6
817,852 - BBR_RS13575 0.48 +1.7
817,927 + BBR_RS13575 0.59 -0.2
817,927 + BBR_RS13575 0.59 -0.1
817,927 + BBR_RS13575 0.59 -0.1
817,927 + BBR_RS13575 0.59 -0.1
817,927 + BBR_RS13575 0.59 -0.1
817,927 + BBR_RS13575 0.59 -0.3
817,927 + BBR_RS13575 0.59 -0.8
817,968 + BBR_RS13575 0.65 +1.9
817,998 - BBR_RS13575 0.70 -1.9
818,028 + BBR_RS13575 0.74 -1.1
818,043 + BBR_RS13575 0.76 +0.5
818,116 - BBR_RS13575 0.87 +0.9
818,116 - BBR_RS13575 0.87 +0.9
818,163 + -1.7
818,191 + +1.4
818,191 + +1.1
818,201 - -0.1
818,299 - BBR_RS13580 0.33 +2.9
818,317 + BBR_RS13580 0.40 +3.5
818,317 + BBR_RS13580 0.40 +2.6
818,319 + BBR_RS13580 0.41 +0.0
818,336 - BBR_RS13580 0.47 -2.2
818,401 - BBR_RS13580 0.72 +0.6
818,407 + BBR_RS13580 0.74 +0.6
818,424 + BBR_RS13580 0.81 +2.4
818,429 + BBR_RS13580 0.83 -0.3
818,443 + BBR_RS13580 0.88 -0.7
818,447 + BBR_RS13580 0.89 +0.4
818,451 - +1.7
818,451 - +0.4
818,475 - +0.5
818,475 - -2.1
818,537 - -0.8
818,537 - -0.3
818,573 + -0.3
818,576 - +0.8
818,581 - -1.0
818,581 - -0.9
818,648 - +1.6
818,710 - +0.2
818,712 - -2.7
818,757 + BBR_RS13585 0.11 -0.7
818,762 + BBR_RS13585 0.11 +0.0
818,770 + BBR_RS13585 0.12 -0.4
818,770 - BBR_RS13585 0.12 +0.0
818,823 + BBR_RS13585 0.17 -2.2
818,889 - BBR_RS13585 0.23 -0.4
818,920 + BBR_RS13585 0.26 -0.8
818,920 + BBR_RS13585 0.26 -0.3
818,920 + BBR_RS13585 0.26 -0.5
819,043 - BBR_RS13585 0.37 +1.4
819,064 + BBR_RS13585 0.39 +2.1
819,064 + BBR_RS13585 0.39 -0.7
819,078 + BBR_RS13585 0.41 +1.4
819,078 + BBR_RS13585 0.41 +0.5
819,078 + BBR_RS13585 0.41 -1.9
819,078 + BBR_RS13585 0.41 +2.8
819,078 + BBR_RS13585 0.41 -1.0
819,078 + BBR_RS13585 0.41 +2.9
819,078 + BBR_RS13585 0.41 -0.7
819,078 + BBR_RS13585 0.41 -2.3
819,078 + BBR_RS13585 0.41 +0.7
819,086 - BBR_RS13585 0.41 +3.5
819,086 - BBR_RS13585 0.41 -1.1
819,086 - BBR_RS13585 0.41 +0.8
819,312 + BBR_RS13585 0.63 -0.6
819,320 - BBR_RS13585 0.63 +3.2
819,342 - BBR_RS13585 0.65 -0.8
819,342 - BBR_RS13585 0.65 -0.2
819,415 + BBR_RS13585 0.72 -2.1
819,425 - BBR_RS13585 0.73 -1.4
819,425 - BBR_RS13585 0.73 -0.1
819,447 + BBR_RS13585 0.75 +0.4
819,447 + BBR_RS13585 0.75 +0.9

Or see this region's nucleotide sequence