Experiment: cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12290 and BBR_RS12295 are separated by 22 nucleotides BBR_RS12295 and BBR_RS12300 are separated by 23 nucleotides BBR_RS12300 and BBR_RS12305 are separated by 219 nucleotides BBR_RS12305 and BBR_RS12310 are separated by 251 nucleotides
BBR_RS12290: BBR_RS12290 - ribosome maturation factor RimM, at 509,071 to 509,685
_RS12290
BBR_RS12295: BBR_RS12295 - RNA-binding protein, at 509,708 to 509,941
_RS12295
BBR_RS12300: BBR_RS12300 - 30S ribosomal protein S16, at 509,965 to 510,438
_RS12300
BBR_RS12305: BBR_RS12305 - endonuclease/exonuclease/phosphatase family protein, at 510,658 to 511,989
_RS12305
BBR_RS12310: BBR_RS12310 - signal recognition particle protein, at 512,241 to 513,896
_RS12310
Position (kb) 510
511
512 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 509.679 kb on - strand at 509.689 kb on - strand at 509.689 kb on - strand at 509.707 kb on - strand at 509.729 kb on - strand at 509.787 kb on - strand, within BBR_RS12295 at 509.936 kb on - strand at 509.940 kb on - strand at 509.952 kb on - strand at 509.982 kb on - strand at 510.049 kb on - strand, within BBR_RS12300 at 510.049 kb on - strand, within BBR_RS12300 at 510.061 kb on - strand, within BBR_RS12300 at 510.154 kb on - strand, within BBR_RS12300 at 510.185 kb on - strand, within BBR_RS12300 at 510.567 kb on + strand at 510.580 kb on + strand at 510.580 kb on + strand at 510.588 kb on - strand at 510.588 kb on - strand at 510.588 kb on - strand at 510.593 kb on - strand at 510.593 kb on - strand at 510.602 kb on + strand at 510.603 kb on - strand at 510.612 kb on - strand at 510.645 kb on + strand at 510.692 kb on - strand at 510.698 kb on - strand at 510.716 kb on + strand at 510.724 kb on - strand at 510.812 kb on - strand, within BBR_RS12305 at 510.813 kb on - strand, within BBR_RS12305 at 510.858 kb on + strand, within BBR_RS12305 at 511.033 kb on - strand, within BBR_RS12305 at 511.044 kb on - strand, within BBR_RS12305 at 511.050 kb on + strand, within BBR_RS12305 at 511.080 kb on + strand, within BBR_RS12305 at 511.080 kb on + strand, within BBR_RS12305 at 511.080 kb on + strand, within BBR_RS12305 at 511.122 kb on - strand, within BBR_RS12305 at 511.158 kb on - strand, within BBR_RS12305 at 511.222 kb on - strand, within BBR_RS12305 at 511.224 kb on - strand, within BBR_RS12305 at 511.242 kb on - strand, within BBR_RS12305 at 511.254 kb on - strand, within BBR_RS12305 at 511.300 kb on + strand, within BBR_RS12305 at 511.410 kb on + strand, within BBR_RS12305 at 511.436 kb on + strand, within BBR_RS12305 at 511.507 kb on - strand, within BBR_RS12305 at 511.547 kb on + strand, within BBR_RS12305 at 511.571 kb on - strand, within BBR_RS12305 at 511.573 kb on - strand, within BBR_RS12305 at 511.622 kb on + strand, within BBR_RS12305 at 511.622 kb on + strand, within BBR_RS12305 at 511.635 kb on - strand, within BBR_RS12305 at 511.644 kb on - strand, within BBR_RS12305 at 511.701 kb on + strand, within BBR_RS12305 at 511.701 kb on + strand, within BBR_RS12305 at 511.718 kb on + strand, within BBR_RS12305 at 511.744 kb on - strand, within BBR_RS12305 at 511.751 kb on + strand, within BBR_RS12305 at 511.758 kb on + strand, within BBR_RS12305 at 511.775 kb on + strand, within BBR_RS12305 at 511.777 kb on + strand, within BBR_RS12305 at 511.793 kb on + strand, within BBR_RS12305 at 511.852 kb on + strand, within BBR_RS12305 at 511.860 kb on - strand at 511.865 kb on + strand at 511.875 kb on - strand at 511.886 kb on + strand at 511.925 kb on - strand at 511.941 kb on - strand at 511.943 kb on + strand at 511.943 kb on + strand at 511.943 kb on + strand at 511.943 kb on + strand at 511.943 kb on + strand at 511.943 kb on + strand at 511.943 kb on + strand at 511.943 kb on + strand at 511.951 kb on - strand at 511.951 kb on - strand at 511.965 kb on + strand at 511.970 kb on + strand at 511.970 kb on + strand at 511.978 kb on - strand at 512.039 kb on - strand at 512.051 kb on + strand at 512.057 kb on - strand at 512.062 kb on - strand at 512.062 kb on - strand at 512.063 kb on - strand at 512.087 kb on - strand at 512.112 kb on - strand at 512.159 kb on - strand at 512.188 kb on - strand at 512.235 kb on + strand at 512.258 kb on - strand at 512.285 kb on - strand at 512.288 kb on + strand at 512.296 kb on - strand at 512.321 kb on + strand at 512.329 kb on - strand at 512.329 kb on - strand at 512.329 kb on - strand at 512.341 kb on + strand at 512.422 kb on + strand, within BBR_RS12310 at 512.435 kb on - strand, within BBR_RS12310 at 512.559 kb on - strand, within BBR_RS12310
Per-strain Table
Position Strand Gene LocusTag Fraction cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 remove 509,679 - -0.6 509,689 - -2.2 509,689 - -3.1 509,707 - +0.4 509,729 - -0.6 509,787 - BBR_RS12295 0.34 -0.9 509,936 - -3.2 509,940 - -4.2 509,952 - -1.9 509,982 - -1.1 510,049 - BBR_RS12300 0.18 -2.1 510,049 - BBR_RS12300 0.18 -2.1 510,061 - BBR_RS12300 0.20 -2.8 510,154 - BBR_RS12300 0.40 -3.9 510,185 - BBR_RS12300 0.46 -2.9 510,567 + +0.6 510,580 + -0.3 510,580 + +1.0 510,588 - -1.4 510,588 - +3.3 510,588 - +0.8 510,593 - -0.1 510,593 - -2.0 510,602 + -1.3 510,603 - -0.2 510,612 - -0.7 510,645 + -0.2 510,692 - -1.2 510,698 - -2.5 510,716 + -3.8 510,724 - +0.6 510,812 - BBR_RS12305 0.12 -1.0 510,813 - BBR_RS12305 0.12 -1.5 510,858 + BBR_RS12305 0.15 -1.8 511,033 - BBR_RS12305 0.28 +0.4 511,044 - BBR_RS12305 0.29 -2.9 511,050 + BBR_RS12305 0.29 -0.7 511,080 + BBR_RS12305 0.32 -2.4 511,080 + BBR_RS12305 0.32 -0.7 511,080 + BBR_RS12305 0.32 -2.1 511,122 - BBR_RS12305 0.35 -2.3 511,158 - BBR_RS12305 0.38 -1.2 511,222 - BBR_RS12305 0.42 -2.4 511,224 - BBR_RS12305 0.42 -4.0 511,242 - BBR_RS12305 0.44 -2.3 511,254 - BBR_RS12305 0.45 -0.6 511,300 + BBR_RS12305 0.48 -1.7 511,410 + BBR_RS12305 0.56 -2.1 511,436 + BBR_RS12305 0.58 -0.2 511,507 - BBR_RS12305 0.64 +2.6 511,547 + BBR_RS12305 0.67 -3.1 511,571 - BBR_RS12305 0.69 -2.2 511,573 - BBR_RS12305 0.69 -1.7 511,622 + BBR_RS12305 0.72 -1.3 511,622 + BBR_RS12305 0.72 +0.3 511,635 - BBR_RS12305 0.73 -1.4 511,644 - BBR_RS12305 0.74 -0.4 511,701 + BBR_RS12305 0.78 -2.3 511,701 + BBR_RS12305 0.78 -2.1 511,718 + BBR_RS12305 0.80 -2.0 511,744 - BBR_RS12305 0.82 -1.2 511,751 + BBR_RS12305 0.82 -2.4 511,758 + BBR_RS12305 0.83 -2.3 511,775 + BBR_RS12305 0.84 +0.1 511,777 + BBR_RS12305 0.84 -2.5 511,793 + BBR_RS12305 0.85 -0.1 511,852 + BBR_RS12305 0.90 -2.4 511,860 - -4.0 511,865 + -0.9 511,875 - -3.1 511,886 + -2.3 511,925 - -2.5 511,941 - -0.7 511,943 + -1.5 511,943 + -0.2 511,943 + -1.7 511,943 + -0.4 511,943 + -1.3 511,943 + -1.6 511,943 + -1.4 511,943 + -1.6 511,951 - -2.4 511,951 - -0.2 511,965 + -0.1 511,970 + +0.9 511,970 + +0.2 511,978 - -2.1 512,039 - +0.7 512,051 + +0.6 512,057 - +0.5 512,062 - -1.1 512,062 - +0.1 512,063 - +0.4 512,087 - +0.8 512,112 - +1.7 512,159 - -0.9 512,188 - +0.3 512,235 + -0.0 512,258 - -1.5 512,285 - -0.7 512,288 + +2.4 512,296 - -0.3 512,321 + -0.0 512,329 - +0.3 512,329 - +0.3 512,329 - -0.3 512,341 + -1.6 512,422 + BBR_RS12310 0.11 -2.2 512,435 - BBR_RS12310 0.12 +0.4 512,559 - BBR_RS12310 0.19 +1.2
Or see this region's nucleotide sequence