Experiment: cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS10620 and BBR_RS10625 are separated by 4 nucleotides BBR_RS10625 and BBR_RS10630 are separated by 30 nucleotides BBR_RS10630 and BBR_RS10635 are separated by 452 nucleotides
BBR_RS10620: BBR_RS10620 - phosphoprotein phosphatase, at 101,123 to 102,742
_RS10620
BBR_RS10625: BBR_RS10625 - FHA domain-containing protein, at 102,747 to 103,271
_RS10625
BBR_RS10630: BBR_RS10630 - DUF2662 domain-containing protein, at 103,302 to 104,003
_RS10630
BBR_RS10635: BBR_RS10635 - Xaa-Pro dipeptidyl-peptidase, at 104,456 to 107,326
_RS10635
Position (kb) 103
104
105 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 102.763 kb on - strand at 102.808 kb on - strand, within BBR_RS10625 at 102.808 kb on - strand, within BBR_RS10625 at 102.810 kb on - strand, within BBR_RS10625 at 102.860 kb on - strand, within BBR_RS10625 at 103.275 kb on - strand at 103.275 kb on - strand at 103.275 kb on - strand at 103.275 kb on - strand at 103.275 kb on - strand at 103.275 kb on - strand at 103.275 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.312 kb on - strand at 103.332 kb on - strand at 103.337 kb on - strand at 104.032 kb on - strand at 104.039 kb on + strand at 104.039 kb on + strand at 104.047 kb on - strand at 104.047 kb on - strand at 104.050 kb on - strand at 104.055 kb on + strand at 104.061 kb on + strand at 104.069 kb on - strand at 104.109 kb on + strand at 104.128 kb on - strand at 104.128 kb on - strand at 104.141 kb on + strand at 104.143 kb on + strand at 104.146 kb on + strand at 104.146 kb on + strand at 104.151 kb on + strand at 104.151 kb on - strand at 104.171 kb on + strand at 104.171 kb on + strand at 104.181 kb on + strand at 104.181 kb on + strand at 104.183 kb on + strand at 104.186 kb on + strand at 104.189 kb on - strand at 104.189 kb on - strand at 104.193 kb on + strand at 104.193 kb on + strand at 104.193 kb on + strand at 104.193 kb on + strand at 104.194 kb on - strand at 104.194 kb on - strand at 104.194 kb on - strand at 104.201 kb on - strand at 104.201 kb on - strand at 104.201 kb on - strand at 104.201 kb on - strand at 104.212 kb on + strand at 104.235 kb on + strand at 104.235 kb on + strand at 104.237 kb on + strand at 104.237 kb on + strand at 104.237 kb on + strand at 104.237 kb on + strand at 104.237 kb on + strand at 104.237 kb on + strand at 104.245 kb on + strand at 104.245 kb on - strand at 104.245 kb on - strand at 104.245 kb on - strand at 104.245 kb on - strand at 104.246 kb on - strand at 104.263 kb on - strand at 104.263 kb on - strand at 104.263 kb on - strand at 104.276 kb on - strand at 104.285 kb on - strand at 104.305 kb on - strand at 104.305 kb on - strand at 104.334 kb on + strand at 104.336 kb on + strand at 104.340 kb on - strand at 104.341 kb on + strand at 104.341 kb on + strand at 104.341 kb on + strand at 104.349 kb on - strand at 104.349 kb on - strand at 104.349 kb on - strand at 104.354 kb on - strand at 104.377 kb on - strand at 104.379 kb on + strand at 104.388 kb on + strand at 104.396 kb on + strand at 104.396 kb on + strand at 104.396 kb on + strand at 104.396 kb on - strand at 104.400 kb on + strand at 104.406 kb on - strand at 104.411 kb on + strand at 104.419 kb on - strand at 104.445 kb on + strand at 104.446 kb on + strand at 104.446 kb on + strand at 104.454 kb on + strand at 104.454 kb on + strand at 104.454 kb on + strand at 104.454 kb on + strand at 104.454 kb on + strand at 104.454 kb on + strand at 104.454 kb on + strand at 104.454 kb on - strand at 104.459 kb on + strand at 104.462 kb on - strand at 104.462 kb on - strand at 104.462 kb on - strand at 104.462 kb on - strand at 104.462 kb on - strand at 104.462 kb on - strand at 104.462 kb on - strand at 104.462 kb on - strand at 104.467 kb on - strand at 104.467 kb on - strand at 104.467 kb on - strand at 104.490 kb on + strand at 104.495 kb on + strand at 104.508 kb on - strand at 104.525 kb on + strand at 104.525 kb on + strand at 104.533 kb on + strand at 104.533 kb on - strand at 104.534 kb on + strand at 104.546 kb on - strand at 104.551 kb on + strand at 104.558 kb on + strand at 104.558 kb on + strand at 104.558 kb on + strand at 104.559 kb on - strand at 104.574 kb on + strand at 104.574 kb on + strand at 104.579 kb on + strand at 104.593 kb on - strand at 104.594 kb on + strand at 104.596 kb on + strand at 104.604 kb on + strand at 104.612 kb on - strand at 104.621 kb on - strand at 104.629 kb on + strand at 104.636 kb on + strand at 104.644 kb on - strand at 104.645 kb on - strand at 104.655 kb on - strand at 104.666 kb on - strand at 104.671 kb on - strand at 104.675 kb on + strand at 104.675 kb on + strand at 104.676 kb on + strand at 104.683 kb on - strand at 104.693 kb on - strand at 104.693 kb on - strand at 104.693 kb on - strand at 104.693 kb on - strand at 104.702 kb on - strand at 104.702 kb on - strand at 104.704 kb on - strand at 104.704 kb on - strand at 104.704 kb on - strand at 104.704 kb on - strand at 104.712 kb on - strand at 104.720 kb on + strand at 104.728 kb on + strand at 104.728 kb on + strand at 104.733 kb on + strand at 104.733 kb on + strand at 104.733 kb on + strand at 104.733 kb on + strand at 104.733 kb on + strand at 104.733 kb on + strand at 104.736 kb on - strand at 104.736 kb on - strand at 104.736 kb on - strand at 104.741 kb on - strand at 104.741 kb on - strand at 104.741 kb on - strand at 104.741 kb on - strand at 104.742 kb on + strand at 104.742 kb on + strand at 104.742 kb on + strand at 104.742 kb on + strand at 104.744 kb on + strand, within BBR_RS10635 at 104.744 kb on + strand, within BBR_RS10635 at 104.744 kb on + strand, within BBR_RS10635 at 104.744 kb on + strand, within BBR_RS10635 at 104.744 kb on + strand, within BBR_RS10635 at 104.744 kb on + strand, within BBR_RS10635 at 104.747 kb on + strand, within BBR_RS10635 at 104.750 kb on - strand, within BBR_RS10635 at 104.752 kb on - strand, within BBR_RS10635 at 104.752 kb on - strand, within BBR_RS10635 at 104.755 kb on - strand, within BBR_RS10635 at 104.762 kb on + strand, within BBR_RS10635 at 104.787 kb on + strand, within BBR_RS10635 at 104.787 kb on + strand, within BBR_RS10635 at 104.787 kb on + strand, within BBR_RS10635 at 104.787 kb on + strand, within BBR_RS10635 at 104.787 kb on + strand, within BBR_RS10635 at 104.787 kb on + strand, within BBR_RS10635 at 104.787 kb on + strand, within BBR_RS10635 at 104.787 kb on + strand, within BBR_RS10635 at 104.787 kb on + strand, within BBR_RS10635 at 104.795 kb on - strand, within BBR_RS10635 at 104.795 kb on - strand, within BBR_RS10635 at 104.795 kb on - strand, within BBR_RS10635 at 104.795 kb on - strand, within BBR_RS10635 at 104.795 kb on - strand, within BBR_RS10635 at 104.797 kb on + strand, within BBR_RS10635 at 104.797 kb on + strand, within BBR_RS10635 at 104.803 kb on - strand, within BBR_RS10635 at 104.803 kb on - strand, within BBR_RS10635 at 104.805 kb on - strand, within BBR_RS10635 at 104.805 kb on - strand, within BBR_RS10635 at 104.805 kb on - strand, within BBR_RS10635 at 104.805 kb on - strand, within BBR_RS10635 at 104.805 kb on - strand, within BBR_RS10635 at 104.805 kb on - strand, within BBR_RS10635 at 104.807 kb on + strand, within BBR_RS10635 at 104.807 kb on + strand, within BBR_RS10635 at 104.807 kb on + strand, within BBR_RS10635 at 104.807 kb on + strand, within BBR_RS10635 at 104.807 kb on + strand, within BBR_RS10635 at 104.828 kb on + strand, within BBR_RS10635 at 104.828 kb on + strand, within BBR_RS10635 at 104.836 kb on - strand, within BBR_RS10635 at 104.838 kb on + strand, within BBR_RS10635 at 104.838 kb on + strand, within BBR_RS10635 at 104.846 kb on - strand, within BBR_RS10635 at 104.846 kb on - strand, within BBR_RS10635 at 104.847 kb on + strand, within BBR_RS10635 at 104.853 kb on + strand, within BBR_RS10635 at 104.853 kb on + strand, within BBR_RS10635 at 104.856 kb on + strand, within BBR_RS10635 at 104.864 kb on - strand, within BBR_RS10635 at 104.864 kb on - strand, within BBR_RS10635 at 104.864 kb on - strand, within BBR_RS10635 at 104.870 kb on - strand, within BBR_RS10635 at 104.903 kb on - strand, within BBR_RS10635 at 104.903 kb on - strand, within BBR_RS10635 at 104.907 kb on + strand, within BBR_RS10635 at 104.907 kb on + strand, within BBR_RS10635 at 104.922 kb on + strand, within BBR_RS10635 at 104.925 kb on - strand, within BBR_RS10635 at 104.925 kb on - strand, within BBR_RS10635 at 104.930 kb on + strand, within BBR_RS10635 at 104.930 kb on + strand, within BBR_RS10635 at 104.930 kb on + strand, within BBR_RS10635 at 104.930 kb on + strand, within BBR_RS10635 at 104.930 kb on + strand, within BBR_RS10635 at 104.930 kb on + strand, within BBR_RS10635 at 104.930 kb on + strand, within BBR_RS10635 at 104.930 kb on + strand, within BBR_RS10635 at 104.930 kb on + strand, within BBR_RS10635 at 104.930 kb on + strand, within BBR_RS10635 at 104.930 kb on + strand, within BBR_RS10635 at 104.930 kb on + strand, within BBR_RS10635 at 104.930 kb on + strand, within BBR_RS10635 at 104.938 kb on - strand, within BBR_RS10635 at 104.938 kb on - strand, within BBR_RS10635 at 104.938 kb on - strand, within BBR_RS10635 at 104.938 kb on - strand, within BBR_RS10635 at 104.938 kb on - strand, within BBR_RS10635 at 104.938 kb on - strand, within BBR_RS10635 at 104.938 kb on - strand, within BBR_RS10635 at 104.938 kb on - strand, within BBR_RS10635 at 104.939 kb on - strand, within BBR_RS10635 at 104.939 kb on - strand, within BBR_RS10635 at 104.942 kb on + strand, within BBR_RS10635 at 104.955 kb on + strand, within BBR_RS10635 at 104.966 kb on + strand, within BBR_RS10635 at 104.966 kb on + strand, within BBR_RS10635 at 104.984 kb on - strand, within BBR_RS10635 at 104.985 kb on + strand, within BBR_RS10635 at 104.985 kb on + strand, within BBR_RS10635 at 104.992 kb on + strand, within BBR_RS10635 at 104.993 kb on - strand, within BBR_RS10635 at 105.003 kb on + strand, within BBR_RS10635
Per-strain Table
Position Strand Gene LocusTag Fraction cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 remove 102,763 - +0.3 102,808 - BBR_RS10625 0.12 -3.2 102,808 - BBR_RS10625 0.12 -2.3 102,810 - BBR_RS10625 0.12 -4.3 102,860 - BBR_RS10625 0.22 -0.1 103,275 - -2.7 103,275 - -3.4 103,275 - -4.1 103,275 - -1.9 103,275 - -0.1 103,275 - -1.1 103,275 - -3.3 103,307 - -1.8 103,307 - -3.5 103,307 - -2.6 103,312 - -1.2 103,332 - -1.5 103,337 - -1.2 104,032 - -0.0 104,039 + -1.6 104,039 + -1.3 104,047 - +0.1 104,047 - -0.3 104,050 - -1.2 104,055 + -3.4 104,061 + -1.1 104,069 - -2.3 104,109 + -0.2 104,128 - -1.3 104,128 - -1.4 104,141 + -0.3 104,143 + +3.4 104,146 + -0.1 104,146 + -0.7 104,151 + -1.4 104,151 - -0.4 104,171 + -0.3 104,171 + +0.3 104,181 + -0.1 104,181 + -2.3 104,183 + -0.6 104,186 + -1.2 104,189 - -1.1 104,189 - -0.2 104,193 + +0.6 104,193 + -0.8 104,193 + +1.0 104,193 + -1.7 104,194 - -1.9 104,194 - +0.4 104,194 - +1.2 104,201 - -1.0 104,201 - -0.1 104,201 - +2.9 104,201 - -1.9 104,212 + +0.1 104,235 + -1.8 104,235 + -0.1 104,237 + -0.5 104,237 + -1.7 104,237 + +0.3 104,237 + +0.5 104,237 + -0.5 104,237 + -0.6 104,245 + -0.9 104,245 - -1.9 104,245 - +0.3 104,245 - +1.1 104,245 - +1.9 104,246 - -1.0 104,263 - -1.3 104,263 - -0.9 104,263 - -0.0 104,276 - +0.6 104,285 - +0.5 104,305 - +0.8 104,305 - +0.5 104,334 + -2.8 104,336 + -0.6 104,340 - +0.6 104,341 + +0.3 104,341 + +0.5 104,341 + -1.5 104,349 - +1.0 104,349 - -0.3 104,349 - -0.5 104,354 - -0.4 104,377 - -1.6 104,379 + -0.6 104,388 + +0.6 104,396 + +0.5 104,396 + -1.0 104,396 + -0.7 104,396 - -1.4 104,400 + +0.6 104,406 - -0.1 104,411 + -0.1 104,419 - -0.3 104,445 + +0.6 104,446 + -1.2 104,446 + -1.6 104,454 + +0.0 104,454 + -0.1 104,454 + +0.1 104,454 + -0.6 104,454 + +1.7 104,454 + -0.6 104,454 + +1.0 104,454 - +0.6 104,459 + -0.4 104,462 - +0.5 104,462 - +0.9 104,462 - +0.5 104,462 - -0.7 104,462 - -0.6 104,462 - -0.5 104,462 - -0.0 104,462 - +0.1 104,467 - -1.3 104,467 - +0.5 104,467 - +0.6 104,490 + -0.2 104,495 + -1.0 104,508 - -1.1 104,525 + -1.2 104,525 + -0.6 104,533 + -0.0 104,533 - -0.0 104,534 + -2.3 104,546 - -2.0 104,551 + -0.6 104,558 + -0.6 104,558 + -0.4 104,558 + -0.1 104,559 - +0.7 104,574 + -3.2 104,574 + +0.7 104,579 + -0.0 104,593 - +0.5 104,594 + -0.8 104,596 + -0.6 104,604 + +0.1 104,612 - -0.5 104,621 - +0.6 104,629 + -0.6 104,636 + +1.3 104,644 - -0.3 104,645 - -0.1 104,655 - -0.8 104,666 - +2.4 104,671 - -0.2 104,675 + +0.2 104,675 + -1.3 104,676 + +3.4 104,683 - +0.7 104,693 - +0.8 104,693 - +0.8 104,693 - +0.7 104,693 - +0.2 104,702 - +0.1 104,702 - -0.7 104,704 - +0.6 104,704 - -0.6 104,704 - +3.3 104,704 - -0.1 104,712 - +0.7 104,720 + +1.5 104,728 + -0.7 104,728 + -0.5 104,733 + -0.3 104,733 + -1.6 104,733 + +0.8 104,733 + -0.3 104,733 + +0.1 104,733 + -1.3 104,736 - -0.6 104,736 - +0.1 104,736 - +0.2 104,741 - +0.8 104,741 - +0.0 104,741 - +0.9 104,741 - +0.0 104,742 + -1.4 104,742 + +0.9 104,742 + -1.0 104,742 + -1.7 104,744 + BBR_RS10635 0.10 -1.3 104,744 + BBR_RS10635 0.10 -1.0 104,744 + BBR_RS10635 0.10 -1.8 104,744 + BBR_RS10635 0.10 -1.1 104,744 + BBR_RS10635 0.10 -1.1 104,744 + BBR_RS10635 0.10 -1.9 104,747 + BBR_RS10635 0.10 +2.7 104,750 - BBR_RS10635 0.10 -1.8 104,752 - BBR_RS10635 0.10 -0.1 104,752 - BBR_RS10635 0.10 +0.6 104,755 - BBR_RS10635 0.10 -0.2 104,762 + BBR_RS10635 0.11 -0.8 104,787 + BBR_RS10635 0.12 -0.4 104,787 + BBR_RS10635 0.12 -1.4 104,787 + BBR_RS10635 0.12 -0.4 104,787 + BBR_RS10635 0.12 -1.5 104,787 + BBR_RS10635 0.12 -0.2 104,787 + BBR_RS10635 0.12 +0.4 104,787 + BBR_RS10635 0.12 -1.0 104,787 + BBR_RS10635 0.12 -0.9 104,787 + BBR_RS10635 0.12 +0.4 104,795 - BBR_RS10635 0.12 +0.4 104,795 - BBR_RS10635 0.12 +0.1 104,795 - BBR_RS10635 0.12 +0.3 104,795 - BBR_RS10635 0.12 +0.2 104,795 - BBR_RS10635 0.12 +0.2 104,797 + BBR_RS10635 0.12 -0.4 104,797 + BBR_RS10635 0.12 -0.6 104,803 - BBR_RS10635 0.12 -1.2 104,803 - BBR_RS10635 0.12 -0.4 104,805 - BBR_RS10635 0.12 +2.0 104,805 - BBR_RS10635 0.12 +0.1 104,805 - BBR_RS10635 0.12 -1.6 104,805 - BBR_RS10635 0.12 +0.3 104,805 - BBR_RS10635 0.12 -1.2 104,805 - BBR_RS10635 0.12 -0.5 104,807 + BBR_RS10635 0.12 -0.5 104,807 + BBR_RS10635 0.12 -0.1 104,807 + BBR_RS10635 0.12 -0.4 104,807 + BBR_RS10635 0.12 +2.3 104,807 + BBR_RS10635 0.12 +3.1 104,828 + BBR_RS10635 0.13 +0.5 104,828 + BBR_RS10635 0.13 -0.9 104,836 - BBR_RS10635 0.13 +0.6 104,838 + BBR_RS10635 0.13 +0.8 104,838 + BBR_RS10635 0.13 -0.3 104,846 - BBR_RS10635 0.14 -1.1 104,846 - BBR_RS10635 0.14 -0.3 104,847 + BBR_RS10635 0.14 -2.4 104,853 + BBR_RS10635 0.14 -0.4 104,853 + BBR_RS10635 0.14 -0.7 104,856 + BBR_RS10635 0.14 -0.5 104,864 - BBR_RS10635 0.14 +0.6 104,864 - BBR_RS10635 0.14 -0.8 104,864 - BBR_RS10635 0.14 -0.4 104,870 - BBR_RS10635 0.14 -0.0 104,903 - BBR_RS10635 0.16 -0.8 104,903 - BBR_RS10635 0.16 -0.8 104,907 + BBR_RS10635 0.16 -1.5 104,907 + BBR_RS10635 0.16 +0.6 104,922 + BBR_RS10635 0.16 -0.9 104,925 - BBR_RS10635 0.16 +0.6 104,925 - BBR_RS10635 0.16 -0.0 104,930 + BBR_RS10635 0.17 -0.6 104,930 + BBR_RS10635 0.17 +0.4 104,930 + BBR_RS10635 0.17 -0.0 104,930 + BBR_RS10635 0.17 +0.5 104,930 + BBR_RS10635 0.17 -0.4 104,930 + BBR_RS10635 0.17 -2.2 104,930 + BBR_RS10635 0.17 -1.0 104,930 + BBR_RS10635 0.17 -1.5 104,930 + BBR_RS10635 0.17 -0.4 104,930 + BBR_RS10635 0.17 +0.3 104,930 + BBR_RS10635 0.17 -0.5 104,930 + BBR_RS10635 0.17 +1.2 104,930 + BBR_RS10635 0.17 +0.1 104,938 - BBR_RS10635 0.17 -0.9 104,938 - BBR_RS10635 0.17 -0.4 104,938 - BBR_RS10635 0.17 +0.2 104,938 - BBR_RS10635 0.17 -1.1 104,938 - BBR_RS10635 0.17 -0.6 104,938 - BBR_RS10635 0.17 -1.4 104,938 - BBR_RS10635 0.17 +2.0 104,938 - BBR_RS10635 0.17 +0.0 104,939 - BBR_RS10635 0.17 -0.7 104,939 - BBR_RS10635 0.17 -1.2 104,942 + BBR_RS10635 0.17 +2.6 104,955 + BBR_RS10635 0.17 +0.3 104,966 + BBR_RS10635 0.18 +2.1 104,966 + BBR_RS10635 0.18 -0.2 104,984 - BBR_RS10635 0.18 -0.7 104,985 + BBR_RS10635 0.18 -3.3 104,985 + BBR_RS10635 0.18 +0.4 104,992 + BBR_RS10635 0.19 -0.3 104,993 - BBR_RS10635 0.19 +0.4 105,003 + BBR_RS10635 0.19 +0.4
Or see this region's nucleotide sequence