Experiment: cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13895 and BBR_RS13900 overlap by 11 nucleotides BBR_RS13900 and BBR_RS13905 are separated by 28 nucleotides BBR_RS13905 and BBR_RS13910 overlap by 4 nucleotides
BBR_RS13895: BBR_RS13895 - acetylglutamate kinase, at 897,400 to 898,356
_RS13895
BBR_RS13900: BBR_RS13900 - acetylornithine transaminase, at 898,346 to 899,641
_RS13900
BBR_RS13905: BBR_RS13905 - ornithine carbamoyltransferase, at 899,670 to 900,635
_RS13905
BBR_RS13910: BBR_RS13910 - arginine repressor, at 900,632 to 901,144
_RS13910
Position (kb) 898
899
900 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 897.352 kb on + strand at 897.360 kb on - strand at 897.409 kb on + strand at 897.475 kb on - strand at 897.492 kb on + strand at 897.514 kb on + strand, within BBR_RS13895 at 897.585 kb on + strand, within BBR_RS13895 at 897.667 kb on + strand, within BBR_RS13895 at 897.668 kb on - strand, within BBR_RS13895 at 897.697 kb on + strand, within BBR_RS13895 at 897.742 kb on + strand, within BBR_RS13895 at 897.775 kb on + strand, within BBR_RS13895 at 897.834 kb on + strand, within BBR_RS13895 at 897.880 kb on + strand, within BBR_RS13895 at 897.918 kb on - strand, within BBR_RS13895 at 897.984 kb on + strand, within BBR_RS13895 at 898.000 kb on - strand, within BBR_RS13895 at 898.130 kb on + strand, within BBR_RS13895 at 898.225 kb on - strand, within BBR_RS13895 at 898.250 kb on + strand, within BBR_RS13895 at 898.278 kb on + strand at 898.330 kb on + strand at 898.340 kb on + strand at 898.350 kb on + strand at 898.407 kb on + strand at 898.407 kb on + strand at 898.534 kb on + strand, within BBR_RS13900 at 898.555 kb on + strand, within BBR_RS13900 at 898.589 kb on + strand, within BBR_RS13900 at 898.671 kb on + strand, within BBR_RS13900 at 898.735 kb on + strand, within BBR_RS13900 at 898.758 kb on + strand, within BBR_RS13900 at 898.758 kb on + strand, within BBR_RS13900 at 898.763 kb on + strand, within BBR_RS13900 at 898.788 kb on + strand, within BBR_RS13900 at 898.871 kb on + strand, within BBR_RS13900 at 898.871 kb on + strand, within BBR_RS13900 at 898.925 kb on + strand, within BBR_RS13900 at 898.938 kb on - strand, within BBR_RS13900 at 898.938 kb on - strand, within BBR_RS13900 at 899.010 kb on - strand, within BBR_RS13900 at 899.044 kb on + strand, within BBR_RS13900 at 899.102 kb on + strand, within BBR_RS13900 at 899.102 kb on + strand, within BBR_RS13900 at 899.178 kb on + strand, within BBR_RS13900 at 899.180 kb on + strand, within BBR_RS13900 at 899.180 kb on + strand, within BBR_RS13900 at 899.255 kb on + strand, within BBR_RS13900 at 899.255 kb on + strand, within BBR_RS13900 at 899.279 kb on + strand, within BBR_RS13900 at 899.287 kb on - strand, within BBR_RS13900 at 899.417 kb on + strand, within BBR_RS13900 at 899.424 kb on + strand, within BBR_RS13900 at 899.424 kb on + strand, within BBR_RS13900 at 899.430 kb on - strand, within BBR_RS13900 at 899.430 kb on - strand, within BBR_RS13900 at 899.439 kb on + strand, within BBR_RS13900 at 899.439 kb on + strand, within BBR_RS13900 at 899.449 kb on + strand, within BBR_RS13900 at 899.457 kb on + strand, within BBR_RS13900 at 899.474 kb on + strand, within BBR_RS13900 at 899.489 kb on + strand, within BBR_RS13900 at 899.489 kb on + strand, within BBR_RS13900 at 899.505 kb on - strand, within BBR_RS13900 at 899.535 kb on + strand at 899.550 kb on + strand at 899.672 kb on + strand at 899.674 kb on + strand at 899.674 kb on + strand at 899.674 kb on + strand at 899.674 kb on + strand at 899.748 kb on + strand at 899.925 kb on + strand, within BBR_RS13905 at 899.930 kb on + strand, within BBR_RS13905 at 899.934 kb on + strand, within BBR_RS13905 at 899.934 kb on + strand, within BBR_RS13905 at 900.017 kb on + strand, within BBR_RS13905 at 900.073 kb on + strand, within BBR_RS13905 at 900.089 kb on + strand, within BBR_RS13905 at 900.145 kb on + strand, within BBR_RS13905 at 900.248 kb on + strand, within BBR_RS13905 at 900.298 kb on + strand, within BBR_RS13905 at 900.310 kb on + strand, within BBR_RS13905 at 900.310 kb on + strand, within BBR_RS13905 at 900.410 kb on + strand, within BBR_RS13905 at 900.418 kb on - strand, within BBR_RS13905 at 900.425 kb on + strand, within BBR_RS13905 at 900.425 kb on + strand, within BBR_RS13905 at 900.539 kb on + strand at 900.540 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 remove 897,352 + -0.2 897,360 - +1.1 897,409 + -0.1 897,475 - -1.5 897,492 + -1.3 897,514 + BBR_RS13895 0.12 -0.5 897,585 + BBR_RS13895 0.19 -0.2 897,667 + BBR_RS13895 0.28 -0.4 897,668 - BBR_RS13895 0.28 -0.4 897,697 + BBR_RS13895 0.31 -0.0 897,742 + BBR_RS13895 0.36 -0.5 897,775 + BBR_RS13895 0.39 +0.2 897,834 + BBR_RS13895 0.45 -0.1 897,880 + BBR_RS13895 0.50 -0.3 897,918 - BBR_RS13895 0.54 -1.2 897,984 + BBR_RS13895 0.61 +0.8 898,000 - BBR_RS13895 0.63 +0.6 898,130 + BBR_RS13895 0.76 +1.1 898,225 - BBR_RS13895 0.86 -0.3 898,250 + BBR_RS13895 0.89 -0.7 898,278 + -0.5 898,330 + -0.3 898,340 + -0.2 898,350 + +0.7 898,407 + -2.1 898,407 + -1.7 898,534 + BBR_RS13900 0.15 +1.2 898,555 + BBR_RS13900 0.16 -0.4 898,589 + BBR_RS13900 0.19 +0.0 898,671 + BBR_RS13900 0.25 +0.3 898,735 + BBR_RS13900 0.30 -1.2 898,758 + BBR_RS13900 0.32 +2.3 898,758 + BBR_RS13900 0.32 +1.7 898,763 + BBR_RS13900 0.32 -1.2 898,788 + BBR_RS13900 0.34 -0.3 898,871 + BBR_RS13900 0.41 +0.6 898,871 + BBR_RS13900 0.41 -0.1 898,925 + BBR_RS13900 0.45 -0.6 898,938 - BBR_RS13900 0.46 +0.5 898,938 - BBR_RS13900 0.46 -2.1 899,010 - BBR_RS13900 0.51 -1.4 899,044 + BBR_RS13900 0.54 -0.5 899,102 + BBR_RS13900 0.58 +1.1 899,102 + BBR_RS13900 0.58 -1.2 899,178 + BBR_RS13900 0.64 +0.1 899,180 + BBR_RS13900 0.64 -0.9 899,180 + BBR_RS13900 0.64 -0.7 899,255 + BBR_RS13900 0.70 +0.2 899,255 + BBR_RS13900 0.70 +0.1 899,279 + BBR_RS13900 0.72 +0.1 899,287 - BBR_RS13900 0.73 +1.9 899,417 + BBR_RS13900 0.83 -1.3 899,424 + BBR_RS13900 0.83 -1.1 899,424 + BBR_RS13900 0.83 +0.7 899,430 - BBR_RS13900 0.84 -0.1 899,430 - BBR_RS13900 0.84 +0.5 899,439 + BBR_RS13900 0.84 -0.3 899,439 + BBR_RS13900 0.84 -0.1 899,449 + BBR_RS13900 0.85 -1.0 899,457 + BBR_RS13900 0.86 -1.1 899,474 + BBR_RS13900 0.87 +0.3 899,489 + BBR_RS13900 0.88 -0.7 899,489 + BBR_RS13900 0.88 -0.2 899,505 - BBR_RS13900 0.89 -0.5 899,535 + -0.7 899,550 + +2.8 899,672 + -0.3 899,674 + -2.1 899,674 + -1.7 899,674 + -2.2 899,674 + -2.6 899,748 + -0.5 899,925 + BBR_RS13905 0.26 +1.2 899,930 + BBR_RS13905 0.27 -4.6 899,934 + BBR_RS13905 0.27 -3.0 899,934 + BBR_RS13905 0.27 -1.9 900,017 + BBR_RS13905 0.36 -0.9 900,073 + BBR_RS13905 0.42 -2.1 900,089 + BBR_RS13905 0.43 -1.4 900,145 + BBR_RS13905 0.49 -3.2 900,248 + BBR_RS13905 0.60 -2.7 900,298 + BBR_RS13905 0.65 -3.2 900,310 + BBR_RS13905 0.66 -0.9 900,310 + BBR_RS13905 0.66 -1.6 900,410 + BBR_RS13905 0.77 -0.3 900,418 - BBR_RS13905 0.77 +0.5 900,425 + BBR_RS13905 0.78 -2.0 900,425 + BBR_RS13905 0.78 -1.6 900,539 + -0.4 900,540 + -3.1
Or see this region's nucleotide sequence