Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13440

Experiment: cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13435 and BBR_RS13440 overlap by 28 nucleotidesBBR_RS13440 and BBR_RS13445 are separated by 137 nucleotides BBR_RS13435: BBR_RS13435 - hypothetical protein, at 783,945 to 785,315 _RS13435 BBR_RS13440: BBR_RS13440 - alpha/beta hydrolase, at 785,288 to 786,625 _RS13440 BBR_RS13445: BBR_RS13445 - phosphoribosylformylglycinamidine synthase, at 786,763 to 790,497 _RS13445 Position (kb) 785 786 787Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 784.310 kb on - strand, within BBR_RS13435at 784.355 kb on + strand, within BBR_RS13435at 784.364 kb on - strand, within BBR_RS13435at 784.378 kb on - strand, within BBR_RS13435at 784.422 kb on - strand, within BBR_RS13435at 784.427 kb on - strand, within BBR_RS13435at 784.431 kb on + strand, within BBR_RS13435at 784.494 kb on + strand, within BBR_RS13435at 784.502 kb on - strand, within BBR_RS13435at 784.502 kb on - strand, within BBR_RS13435at 784.502 kb on - strand, within BBR_RS13435at 784.632 kb on + strand, within BBR_RS13435at 784.658 kb on + strand, within BBR_RS13435at 784.658 kb on + strand, within BBR_RS13435at 784.664 kb on - strand, within BBR_RS13435at 784.673 kb on + strand, within BBR_RS13435at 784.698 kb on + strand, within BBR_RS13435at 784.698 kb on + strand, within BBR_RS13435at 784.706 kb on - strand, within BBR_RS13435at 784.708 kb on + strand, within BBR_RS13435at 784.845 kb on + strand, within BBR_RS13435at 784.870 kb on - strand, within BBR_RS13435at 784.872 kb on + strand, within BBR_RS13435at 784.906 kb on - strand, within BBR_RS13435at 784.915 kb on + strand, within BBR_RS13435at 784.915 kb on + strand, within BBR_RS13435at 784.923 kb on + strand, within BBR_RS13435at 784.929 kb on - strand, within BBR_RS13435at 784.933 kb on + strand, within BBR_RS13435at 784.941 kb on - strand, within BBR_RS13435at 784.941 kb on - strand, within BBR_RS13435at 784.941 kb on - strand, within BBR_RS13435at 784.943 kb on + strand, within BBR_RS13435at 785.110 kb on - strand, within BBR_RS13435at 785.110 kb on - strand, within BBR_RS13435at 785.116 kb on - strand, within BBR_RS13435at 785.193 kb on + strandat 785.201 kb on - strandat 785.257 kb on + strandat 785.266 kb on + strandat 785.266 kb on + strandat 785.266 kb on + strandat 785.274 kb on - strandat 785.279 kb on - strandat 785.300 kb on + strandat 785.300 kb on + strandat 785.300 kb on + strandat 785.334 kb on + strandat 785.334 kb on + strandat 785.417 kb on + strandat 785.417 kb on + strandat 785.481 kb on - strand, within BBR_RS13440at 785.493 kb on - strand, within BBR_RS13440at 785.539 kb on - strand, within BBR_RS13440at 785.546 kb on + strand, within BBR_RS13440at 785.546 kb on + strand, within BBR_RS13440at 785.554 kb on - strand, within BBR_RS13440at 785.556 kb on + strand, within BBR_RS13440at 785.560 kb on + strand, within BBR_RS13440at 785.564 kb on - strand, within BBR_RS13440at 785.568 kb on - strand, within BBR_RS13440at 785.568 kb on - strand, within BBR_RS13440at 785.568 kb on - strand, within BBR_RS13440at 785.583 kb on - strand, within BBR_RS13440at 785.587 kb on + strand, within BBR_RS13440at 785.587 kb on + strand, within BBR_RS13440at 785.587 kb on + strand, within BBR_RS13440at 785.587 kb on + strand, within BBR_RS13440at 785.595 kb on - strand, within BBR_RS13440at 785.595 kb on - strand, within BBR_RS13440at 785.650 kb on + strand, within BBR_RS13440at 785.653 kb on - strand, within BBR_RS13440at 785.667 kb on - strand, within BBR_RS13440at 785.669 kb on + strand, within BBR_RS13440at 785.672 kb on - strand, within BBR_RS13440at 785.672 kb on - strand, within BBR_RS13440at 785.672 kb on - strand, within BBR_RS13440at 785.677 kb on - strand, within BBR_RS13440at 785.677 kb on - strand, within BBR_RS13440at 785.712 kb on + strand, within BBR_RS13440at 785.712 kb on + strand, within BBR_RS13440at 785.726 kb on + strand, within BBR_RS13440at 785.733 kb on + strand, within BBR_RS13440at 785.734 kb on + strand, within BBR_RS13440at 785.734 kb on + strand, within BBR_RS13440at 785.747 kb on + strand, within BBR_RS13440at 785.769 kb on + strand, within BBR_RS13440at 785.883 kb on + strand, within BBR_RS13440at 785.934 kb on - strand, within BBR_RS13440at 786.057 kb on - strand, within BBR_RS13440at 786.064 kb on + strand, within BBR_RS13440at 786.069 kb on + strand, within BBR_RS13440at 786.101 kb on + strand, within BBR_RS13440at 786.109 kb on - strand, within BBR_RS13440at 786.177 kb on + strand, within BBR_RS13440at 786.208 kb on + strand, within BBR_RS13440at 786.216 kb on - strand, within BBR_RS13440at 786.216 kb on - strand, within BBR_RS13440at 786.221 kb on - strand, within BBR_RS13440at 786.221 kb on - strand, within BBR_RS13440at 786.230 kb on - strand, within BBR_RS13440at 786.308 kb on + strand, within BBR_RS13440at 786.314 kb on + strand, within BBR_RS13440at 786.345 kb on - strand, within BBR_RS13440at 786.406 kb on - strand, within BBR_RS13440at 786.406 kb on - strand, within BBR_RS13440at 786.426 kb on + strand, within BBR_RS13440at 786.469 kb on - strand, within BBR_RS13440at 786.550 kb on - strandat 786.602 kb on + strandat 786.633 kb on + strandat 786.675 kb on - strandat 786.680 kb on - strandat 786.727 kb on + strandat 786.727 kb on + strandat 786.728 kb on - strandat 786.728 kb on - strandat 786.735 kb on - strandat 786.883 kb on + strandat 786.908 kb on - strandat 786.912 kb on + strandat 786.952 kb on - strandat 786.965 kb on + strandat 787.003 kb on - strandat 787.069 kb on - strandat 787.069 kb on - strandat 787.082 kb on + strandat 787.092 kb on + strandat 787.162 kb on + strand, within BBR_RS13445at 787.228 kb on - strand, within BBR_RS13445at 787.284 kb on + strand, within BBR_RS13445at 787.328 kb on + strand, within BBR_RS13445at 787.591 kb on + strand, within BBR_RS13445

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Per-strain Table

Position Strand Gene LocusTag Fraction cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
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784,310 - BBR_RS13435 0.27 +0.5
784,355 + BBR_RS13435 0.30 +1.2
784,364 - BBR_RS13435 0.31 +2.0
784,378 - BBR_RS13435 0.32 +0.6
784,422 - BBR_RS13435 0.35 +0.7
784,427 - BBR_RS13435 0.35 -0.4
784,431 + BBR_RS13435 0.35 +0.1
784,494 + BBR_RS13435 0.40 -0.2
784,502 - BBR_RS13435 0.41 -0.3
784,502 - BBR_RS13435 0.41 +0.2
784,502 - BBR_RS13435 0.41 +0.6
784,632 + BBR_RS13435 0.50 -0.1
784,658 + BBR_RS13435 0.52 +0.6
784,658 + BBR_RS13435 0.52 +1.1
784,664 - BBR_RS13435 0.52 +0.8
784,673 + BBR_RS13435 0.53 +2.5
784,698 + BBR_RS13435 0.55 +0.8
784,698 + BBR_RS13435 0.55 +1.5
784,706 - BBR_RS13435 0.56 -0.1
784,708 + BBR_RS13435 0.56 +0.9
784,845 + BBR_RS13435 0.66 +0.4
784,870 - BBR_RS13435 0.67 +0.8
784,872 + BBR_RS13435 0.68 +1.1
784,906 - BBR_RS13435 0.70 +0.4
784,915 + BBR_RS13435 0.71 -0.2
784,915 + BBR_RS13435 0.71 +0.2
784,923 + BBR_RS13435 0.71 +0.3
784,929 - BBR_RS13435 0.72 -0.4
784,933 + BBR_RS13435 0.72 +0.4
784,941 - BBR_RS13435 0.73 +0.5
784,941 - BBR_RS13435 0.73 +1.4
784,941 - BBR_RS13435 0.73 -0.6
784,943 + BBR_RS13435 0.73 +3.0
785,110 - BBR_RS13435 0.85 +0.4
785,110 - BBR_RS13435 0.85 +0.6
785,116 - BBR_RS13435 0.85 +1.0
785,193 + +0.1
785,201 - +0.3
785,257 + +3.2
785,266 + +3.1
785,266 + +0.5
785,266 + +0.1
785,274 - +0.4
785,279 - -0.8
785,300 + +0.1
785,300 + -0.5
785,300 + +0.2
785,334 + -0.1
785,334 + -1.0
785,417 + -1.2
785,417 + -0.3
785,481 - BBR_RS13440 0.14 +0.6
785,493 - BBR_RS13440 0.15 -1.0
785,539 - BBR_RS13440 0.19 +1.2
785,546 + BBR_RS13440 0.19 -0.5
785,546 + BBR_RS13440 0.19 +0.8
785,554 - BBR_RS13440 0.20 +0.5
785,556 + BBR_RS13440 0.20 +3.1
785,560 + BBR_RS13440 0.20 +0.0
785,564 - BBR_RS13440 0.21 +0.4
785,568 - BBR_RS13440 0.21 +1.5
785,568 - BBR_RS13440 0.21 +0.6
785,568 - BBR_RS13440 0.21 +0.3
785,583 - BBR_RS13440 0.22 +0.0
785,587 + BBR_RS13440 0.22 +0.3
785,587 + BBR_RS13440 0.22 -0.9
785,587 + BBR_RS13440 0.22 +3.3
785,587 + BBR_RS13440 0.22 +0.9
785,595 - BBR_RS13440 0.23 +0.3
785,595 - BBR_RS13440 0.23 +0.5
785,650 + BBR_RS13440 0.27 -0.2
785,653 - BBR_RS13440 0.27 -0.2
785,667 - BBR_RS13440 0.28 +0.5
785,669 + BBR_RS13440 0.28 +0.1
785,672 - BBR_RS13440 0.29 +0.4
785,672 - BBR_RS13440 0.29 +0.1
785,672 - BBR_RS13440 0.29 +0.1
785,677 - BBR_RS13440 0.29 -0.9
785,677 - BBR_RS13440 0.29 +0.3
785,712 + BBR_RS13440 0.32 +0.2
785,712 + BBR_RS13440 0.32 -0.2
785,726 + BBR_RS13440 0.33 -0.1
785,733 + BBR_RS13440 0.33 +0.4
785,734 + BBR_RS13440 0.33 +0.6
785,734 + BBR_RS13440 0.33 +0.9
785,747 + BBR_RS13440 0.34 +0.2
785,769 + BBR_RS13440 0.36 -0.0
785,883 + BBR_RS13440 0.44 +0.0
785,934 - BBR_RS13440 0.48 +2.6
786,057 - BBR_RS13440 0.57 -0.1
786,064 + BBR_RS13440 0.58 -0.1
786,069 + BBR_RS13440 0.58 +0.2
786,101 + BBR_RS13440 0.61 -0.2
786,109 - BBR_RS13440 0.61 -0.0
786,177 + BBR_RS13440 0.66 -0.9
786,208 + BBR_RS13440 0.69 -0.0
786,216 - BBR_RS13440 0.69 -0.1
786,216 - BBR_RS13440 0.69 +0.1
786,221 - BBR_RS13440 0.70 -0.4
786,221 - BBR_RS13440 0.70 -0.5
786,230 - BBR_RS13440 0.70 +1.4
786,308 + BBR_RS13440 0.76 -0.2
786,314 + BBR_RS13440 0.77 -0.7
786,345 - BBR_RS13440 0.79 -0.5
786,406 - BBR_RS13440 0.84 +0.8
786,406 - BBR_RS13440 0.84 +0.3
786,426 + BBR_RS13440 0.85 +0.5
786,469 - BBR_RS13440 0.88 +0.4
786,550 - +0.0
786,602 + +0.6
786,633 + +0.8
786,675 - -0.1
786,680 - -0.0
786,727 + -0.1
786,727 + -1.0
786,728 - -0.2
786,728 - -0.6
786,735 - -2.2
786,883 + -1.5
786,908 - -1.8
786,912 + -2.4
786,952 - -3.0
786,965 + -2.6
787,003 - -3.6
787,069 - -2.8
787,069 - -3.3
787,082 + -4.0
787,092 + +1.0
787,162 + BBR_RS13445 0.11 -3.4
787,228 - BBR_RS13445 0.12 -3.4
787,284 + BBR_RS13445 0.14 -2.5
787,328 + BBR_RS13445 0.15 -1.9
787,591 + BBR_RS13445 0.22 -2.8

Or see this region's nucleotide sequence