Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13430

Experiment: cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13425 and BBR_RS13430 are separated by 83 nucleotidesBBR_RS13430 and BBR_RS13435 overlap by 4 nucleotides BBR_RS13425: BBR_RS13425 - hypothetical protein, at 782,393 to 783,205 _RS13425 BBR_RS13430: BBR_RS13430 - hypothetical protein, at 783,289 to 783,948 _RS13430 BBR_RS13435: BBR_RS13435 - hypothetical protein, at 783,945 to 785,315 _RS13435 Position (kb) 783 784Strain fitness (log2 ratio) -2 -1 0 1 2 3at 782.339 kb on - strandat 782.408 kb on - strandat 782.417 kb on + strandat 782.424 kb on - strandat 782.445 kb on + strandat 782.499 kb on + strand, within BBR_RS13425at 782.499 kb on + strand, within BBR_RS13425at 782.556 kb on + strand, within BBR_RS13425at 782.676 kb on - strand, within BBR_RS13425at 782.676 kb on - strand, within BBR_RS13425at 782.765 kb on + strand, within BBR_RS13425at 782.788 kb on + strand, within BBR_RS13425at 782.789 kb on - strand, within BBR_RS13425at 782.802 kb on - strand, within BBR_RS13425at 782.919 kb on + strand, within BBR_RS13425at 782.925 kb on - strand, within BBR_RS13425at 782.978 kb on + strand, within BBR_RS13425at 782.989 kb on - strand, within BBR_RS13425at 783.079 kb on - strand, within BBR_RS13425at 783.089 kb on + strand, within BBR_RS13425at 783.094 kb on + strand, within BBR_RS13425at 783.106 kb on + strand, within BBR_RS13425at 783.166 kb on + strandat 783.174 kb on - strandat 783.180 kb on - strandat 783.180 kb on - strandat 783.187 kb on + strandat 783.199 kb on + strandat 783.199 kb on + strandat 783.258 kb on - strandat 783.385 kb on - strand, within BBR_RS13430at 783.391 kb on - strand, within BBR_RS13430at 783.428 kb on - strand, within BBR_RS13430at 783.434 kb on + strand, within BBR_RS13430at 783.444 kb on - strand, within BBR_RS13430at 783.488 kb on + strand, within BBR_RS13430at 783.488 kb on + strand, within BBR_RS13430at 783.497 kb on - strand, within BBR_RS13430at 783.513 kb on + strand, within BBR_RS13430at 783.530 kb on + strand, within BBR_RS13430at 783.533 kb on - strand, within BBR_RS13430at 783.544 kb on + strand, within BBR_RS13430at 783.544 kb on + strand, within BBR_RS13430at 783.580 kb on - strand, within BBR_RS13430at 783.593 kb on + strand, within BBR_RS13430at 783.595 kb on + strand, within BBR_RS13430at 783.598 kb on + strand, within BBR_RS13430at 783.601 kb on - strand, within BBR_RS13430at 783.601 kb on - strand, within BBR_RS13430at 783.605 kb on + strand, within BBR_RS13430at 783.700 kb on - strand, within BBR_RS13430at 783.700 kb on - strand, within BBR_RS13430at 783.751 kb on + strand, within BBR_RS13430at 783.840 kb on - strand, within BBR_RS13430at 783.857 kb on + strand, within BBR_RS13430at 783.900 kb on + strandat 783.900 kb on + strandat 783.942 kb on + strandat 783.942 kb on + strandat 783.960 kb on + strandat 784.007 kb on + strandat 784.009 kb on - strandat 784.090 kb on + strand, within BBR_RS13435at 784.174 kb on - strand, within BBR_RS13435at 784.187 kb on + strand, within BBR_RS13435at 784.195 kb on - strand, within BBR_RS13435at 784.243 kb on + strand, within BBR_RS13435at 784.243 kb on + strand, within BBR_RS13435at 784.248 kb on + strand, within BBR_RS13435at 784.253 kb on + strand, within BBR_RS13435at 784.256 kb on - strand, within BBR_RS13435at 784.256 kb on - strand, within BBR_RS13435at 784.256 kb on - strand, within BBR_RS13435at 784.263 kb on - strand, within BBR_RS13435at 784.310 kb on - strand, within BBR_RS13435at 784.355 kb on + strand, within BBR_RS13435at 784.364 kb on - strand, within BBR_RS13435at 784.378 kb on - strand, within BBR_RS13435at 784.422 kb on - strand, within BBR_RS13435at 784.427 kb on - strand, within BBR_RS13435at 784.431 kb on + strand, within BBR_RS13435at 784.494 kb on + strand, within BBR_RS13435at 784.502 kb on - strand, within BBR_RS13435at 784.502 kb on - strand, within BBR_RS13435at 784.502 kb on - strand, within BBR_RS13435at 784.632 kb on + strand, within BBR_RS13435at 784.658 kb on + strand, within BBR_RS13435at 784.658 kb on + strand, within BBR_RS13435at 784.664 kb on - strand, within BBR_RS13435at 784.673 kb on + strand, within BBR_RS13435at 784.698 kb on + strand, within BBR_RS13435at 784.698 kb on + strand, within BBR_RS13435at 784.706 kb on - strand, within BBR_RS13435at 784.708 kb on + strand, within BBR_RS13435at 784.845 kb on + strand, within BBR_RS13435at 784.870 kb on - strand, within BBR_RS13435at 784.872 kb on + strand, within BBR_RS13435at 784.906 kb on - strand, within BBR_RS13435at 784.915 kb on + strand, within BBR_RS13435at 784.915 kb on + strand, within BBR_RS13435at 784.923 kb on + strand, within BBR_RS13435at 784.929 kb on - strand, within BBR_RS13435at 784.933 kb on + strand, within BBR_RS13435at 784.941 kb on - strand, within BBR_RS13435at 784.941 kb on - strand, within BBR_RS13435at 784.941 kb on - strand, within BBR_RS13435at 784.943 kb on + strand, within BBR_RS13435

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Per-strain Table

Position Strand Gene LocusTag Fraction cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
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782,339 - -0.7
782,408 - +0.2
782,417 + -0.4
782,424 - -0.6
782,445 + +0.6
782,499 + BBR_RS13425 0.13 -1.1
782,499 + BBR_RS13425 0.13 +0.7
782,556 + BBR_RS13425 0.20 -0.0
782,676 - BBR_RS13425 0.35 +3.2
782,676 - BBR_RS13425 0.35 +1.7
782,765 + BBR_RS13425 0.46 -0.3
782,788 + BBR_RS13425 0.49 +0.1
782,789 - BBR_RS13425 0.49 +0.4
782,802 - BBR_RS13425 0.50 -0.3
782,919 + BBR_RS13425 0.65 +1.5
782,925 - BBR_RS13425 0.65 -0.0
782,978 + BBR_RS13425 0.72 +0.9
782,989 - BBR_RS13425 0.73 -0.3
783,079 - BBR_RS13425 0.84 +0.3
783,089 + BBR_RS13425 0.86 -0.8
783,094 + BBR_RS13425 0.86 -2.3
783,106 + BBR_RS13425 0.88 -0.3
783,166 + -0.7
783,174 - -1.5
783,180 - -0.9
783,180 - -0.9
783,187 + +0.3
783,199 + -0.4
783,199 + -0.5
783,258 - +0.7
783,385 - BBR_RS13430 0.15 +3.0
783,391 - BBR_RS13430 0.15 +1.0
783,428 - BBR_RS13430 0.21 -0.0
783,434 + BBR_RS13430 0.22 +0.2
783,444 - BBR_RS13430 0.23 +0.8
783,488 + BBR_RS13430 0.30 +0.4
783,488 + BBR_RS13430 0.30 -1.4
783,497 - BBR_RS13430 0.32 +0.8
783,513 + BBR_RS13430 0.34 -0.2
783,530 + BBR_RS13430 0.37 +0.2
783,533 - BBR_RS13430 0.37 +0.5
783,544 + BBR_RS13430 0.39 +0.1
783,544 + BBR_RS13430 0.39 +0.9
783,580 - BBR_RS13430 0.44 +0.5
783,593 + BBR_RS13430 0.46 +0.2
783,595 + BBR_RS13430 0.46 +0.9
783,598 + BBR_RS13430 0.47 +0.6
783,601 - BBR_RS13430 0.47 +3.4
783,601 - BBR_RS13430 0.47 +0.7
783,605 + BBR_RS13430 0.48 +0.6
783,700 - BBR_RS13430 0.62 +0.4
783,700 - BBR_RS13430 0.62 +0.1
783,751 + BBR_RS13430 0.70 +0.4
783,840 - BBR_RS13430 0.83 +0.5
783,857 + BBR_RS13430 0.86 +0.2
783,900 + +0.9
783,900 + +0.3
783,942 + +1.5
783,942 + +1.2
783,960 + +3.7
784,007 + +0.8
784,009 - -0.4
784,090 + BBR_RS13435 0.11 +1.2
784,174 - BBR_RS13435 0.17 +0.7
784,187 + BBR_RS13435 0.18 +0.7
784,195 - BBR_RS13435 0.18 +0.5
784,243 + BBR_RS13435 0.22 -0.4
784,243 + BBR_RS13435 0.22 +0.1
784,248 + BBR_RS13435 0.22 +0.5
784,253 + BBR_RS13435 0.22 -0.1
784,256 - BBR_RS13435 0.23 +0.4
784,256 - BBR_RS13435 0.23 +1.2
784,256 - BBR_RS13435 0.23 -0.3
784,263 - BBR_RS13435 0.23 +0.9
784,310 - BBR_RS13435 0.27 +0.5
784,355 + BBR_RS13435 0.30 +1.2
784,364 - BBR_RS13435 0.31 +2.0
784,378 - BBR_RS13435 0.32 +0.6
784,422 - BBR_RS13435 0.35 +0.7
784,427 - BBR_RS13435 0.35 -0.4
784,431 + BBR_RS13435 0.35 +0.1
784,494 + BBR_RS13435 0.40 -0.2
784,502 - BBR_RS13435 0.41 -0.3
784,502 - BBR_RS13435 0.41 +0.2
784,502 - BBR_RS13435 0.41 +0.6
784,632 + BBR_RS13435 0.50 -0.1
784,658 + BBR_RS13435 0.52 +0.6
784,658 + BBR_RS13435 0.52 +1.1
784,664 - BBR_RS13435 0.52 +0.8
784,673 + BBR_RS13435 0.53 +2.5
784,698 + BBR_RS13435 0.55 +0.8
784,698 + BBR_RS13435 0.55 +1.5
784,706 - BBR_RS13435 0.56 -0.1
784,708 + BBR_RS13435 0.56 +0.9
784,845 + BBR_RS13435 0.66 +0.4
784,870 - BBR_RS13435 0.67 +0.8
784,872 + BBR_RS13435 0.68 +1.1
784,906 - BBR_RS13435 0.70 +0.4
784,915 + BBR_RS13435 0.71 -0.2
784,915 + BBR_RS13435 0.71 +0.2
784,923 + BBR_RS13435 0.71 +0.3
784,929 - BBR_RS13435 0.72 -0.4
784,933 + BBR_RS13435 0.72 +0.4
784,941 - BBR_RS13435 0.73 +0.5
784,941 - BBR_RS13435 0.73 +1.4
784,941 - BBR_RS13435 0.73 -0.6
784,943 + BBR_RS13435 0.73 +3.0

Or see this region's nucleotide sequence