Experiment: cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13300 and BBR_RS13305 are separated by 8 nucleotides BBR_RS13305 and BBR_RS13310 are separated by 46 nucleotides BBR_RS13310 and BBR_RS13315 overlap by 4 nucleotides
BBR_RS13300: BBR_RS13300 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 759,094 to 760,272
_RS13300
BBR_RS13305: BBR_RS13305 - transcriptional repressor, at 760,281 to 760,709
_RS13305
BBR_RS13310: BBR_RS13310 - hypothetical protein, at 760,756 to 761,466
_RS13310
BBR_RS13315: BBR_RS13315 - hypothetical protein, at 761,463 to 761,882
_RS13315
Position (kb) 760
761 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 759.413 kb on + strand, within BBR_RS13300 at 759.498 kb on - strand, within BBR_RS13300 at 759.595 kb on - strand, within BBR_RS13300 at 760.274 kb on - strand at 760.281 kb on - strand at 760.337 kb on + strand, within BBR_RS13305 at 760.342 kb on + strand, within BBR_RS13305 at 760.350 kb on - strand, within BBR_RS13305 at 760.350 kb on - strand, within BBR_RS13305 at 760.384 kb on - strand, within BBR_RS13305 at 760.518 kb on + strand, within BBR_RS13305 at 760.602 kb on + strand, within BBR_RS13305 at 760.607 kb on + strand, within BBR_RS13305 at 760.630 kb on + strand, within BBR_RS13305 at 760.630 kb on + strand, within BBR_RS13305 at 760.632 kb on + strand, within BBR_RS13305 at 760.638 kb on - strand, within BBR_RS13305 at 760.638 kb on - strand, within BBR_RS13305 at 760.638 kb on - strand, within BBR_RS13305 at 760.638 kb on - strand, within BBR_RS13305 at 760.685 kb on - strand at 760.689 kb on + strand at 760.712 kb on - strand at 760.755 kb on + strand at 760.758 kb on + strand at 760.758 kb on + strand at 760.793 kb on + strand at 760.793 kb on + strand at 760.793 kb on + strand at 760.793 kb on + strand at 760.818 kb on + strand at 760.836 kb on + strand, within BBR_RS13310 at 760.907 kb on + strand, within BBR_RS13310 at 760.937 kb on + strand, within BBR_RS13310 at 760.945 kb on - strand, within BBR_RS13310 at 761.001 kb on - strand, within BBR_RS13310 at 761.006 kb on - strand, within BBR_RS13310 at 761.031 kb on + strand, within BBR_RS13310 at 761.046 kb on + strand, within BBR_RS13310 at 761.054 kb on - strand, within BBR_RS13310 at 761.082 kb on + strand, within BBR_RS13310 at 761.082 kb on + strand, within BBR_RS13310 at 761.082 kb on + strand, within BBR_RS13310 at 761.082 kb on + strand, within BBR_RS13310 at 761.090 kb on - strand, within BBR_RS13310 at 761.090 kb on - strand, within BBR_RS13310 at 761.109 kb on - strand, within BBR_RS13310 at 761.188 kb on + strand, within BBR_RS13310 at 761.196 kb on + strand, within BBR_RS13310 at 761.198 kb on - strand, within BBR_RS13310 at 761.198 kb on - strand, within BBR_RS13310 at 761.206 kb on + strand, within BBR_RS13310 at 761.207 kb on - strand, within BBR_RS13310 at 761.291 kb on + strand, within BBR_RS13310 at 761.336 kb on - strand, within BBR_RS13310 at 761.338 kb on - strand, within BBR_RS13310 at 761.363 kb on + strand, within BBR_RS13310 at 761.377 kb on + strand, within BBR_RS13310 at 761.421 kb on + strand at 761.453 kb on + strand at 761.458 kb on + strand at 761.459 kb on + strand at 761.461 kb on - strand at 761.468 kb on + strand at 761.509 kb on + strand, within BBR_RS13315 at 761.522 kb on - strand, within BBR_RS13315 at 761.527 kb on - strand, within BBR_RS13315 at 761.527 kb on - strand, within BBR_RS13315 at 761.532 kb on + strand, within BBR_RS13315 at 761.551 kb on + strand, within BBR_RS13315 at 761.569 kb on - strand, within BBR_RS13315 at 761.569 kb on - strand, within BBR_RS13315 at 761.668 kb on + strand, within BBR_RS13315 at 761.670 kb on - strand, within BBR_RS13315 at 761.674 kb on + strand, within BBR_RS13315 at 761.702 kb on - strand, within BBR_RS13315 at 761.702 kb on - strand, within BBR_RS13315
Per-strain Table
Position Strand Gene LocusTag Fraction cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 remove 759,413 + BBR_RS13300 0.27 -2.5 759,498 - BBR_RS13300 0.34 -0.9 759,595 - BBR_RS13300 0.42 +1.2 760,274 - -2.3 760,281 - -2.3 760,337 + BBR_RS13305 0.13 -1.6 760,342 + BBR_RS13305 0.14 +0.5 760,350 - BBR_RS13305 0.16 -1.7 760,350 - BBR_RS13305 0.16 -1.4 760,384 - BBR_RS13305 0.24 -3.2 760,518 + BBR_RS13305 0.55 -1.3 760,602 + BBR_RS13305 0.75 -1.8 760,607 + BBR_RS13305 0.76 -2.0 760,630 + BBR_RS13305 0.81 -0.9 760,630 + BBR_RS13305 0.81 -0.8 760,632 + BBR_RS13305 0.82 -1.7 760,638 - BBR_RS13305 0.83 -0.1 760,638 - BBR_RS13305 0.83 -1.1 760,638 - BBR_RS13305 0.83 -2.1 760,638 - BBR_RS13305 0.83 -3.2 760,685 - +0.6 760,689 + -0.2 760,712 - +0.2 760,755 + +0.1 760,758 + -0.9 760,758 + -0.5 760,793 + +2.7 760,793 + -0.1 760,793 + +3.1 760,793 + +0.6 760,818 + +0.6 760,836 + BBR_RS13310 0.11 -0.1 760,907 + BBR_RS13310 0.21 +0.0 760,937 + BBR_RS13310 0.25 +0.2 760,945 - BBR_RS13310 0.27 +0.4 761,001 - BBR_RS13310 0.34 -0.2 761,006 - BBR_RS13310 0.35 -0.6 761,031 + BBR_RS13310 0.39 +1.4 761,046 + BBR_RS13310 0.41 +0.2 761,054 - BBR_RS13310 0.42 +0.7 761,082 + BBR_RS13310 0.46 +0.5 761,082 + BBR_RS13310 0.46 +0.0 761,082 + BBR_RS13310 0.46 +1.0 761,082 + BBR_RS13310 0.46 -1.5 761,090 - BBR_RS13310 0.47 +1.2 761,090 - BBR_RS13310 0.47 +0.2 761,109 - BBR_RS13310 0.50 -0.2 761,188 + BBR_RS13310 0.61 -0.2 761,196 + BBR_RS13310 0.62 +0.2 761,198 - BBR_RS13310 0.62 +1.1 761,198 - BBR_RS13310 0.62 -0.1 761,206 + BBR_RS13310 0.63 -0.1 761,207 - BBR_RS13310 0.63 +0.5 761,291 + BBR_RS13310 0.75 -2.2 761,336 - BBR_RS13310 0.82 -1.3 761,338 - BBR_RS13310 0.82 -0.4 761,363 + BBR_RS13310 0.85 +2.7 761,377 + BBR_RS13310 0.87 -0.1 761,421 + -1.6 761,453 + -0.3 761,458 + -0.9 761,459 + -0.0 761,461 - -0.2 761,468 + -0.6 761,509 + BBR_RS13315 0.11 -0.7 761,522 - BBR_RS13315 0.14 +0.1 761,527 - BBR_RS13315 0.15 -0.3 761,527 - BBR_RS13315 0.15 -0.5 761,532 + BBR_RS13315 0.16 +0.8 761,551 + BBR_RS13315 0.21 +0.3 761,569 - BBR_RS13315 0.25 +0.0 761,569 - BBR_RS13315 0.25 -2.9 761,668 + BBR_RS13315 0.49 +2.3 761,670 - BBR_RS13315 0.49 -0.2 761,674 + BBR_RS13315 0.50 +2.8 761,702 - BBR_RS13315 0.57 +0.3 761,702 - BBR_RS13315 0.57 -0.7
Or see this region's nucleotide sequence