Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20425

Experiment: cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
2,404,109	+				+0.7
2,404,115	+				-0.5
2,404,116	-				+0.2
2,404,123	-				-2.7
2,404,125	+				-1.5
2,404,133	-				-0.9
2,404,144	+				+0.6
2,404,170	+				-3.2
2,404,170	+				+0.0
2,404,174	+				-1.3
2,404,176	-				-1.5
2,404,176	-				-0.7
2,404,208	-				-2.2
2,404,213	+				-2.7
2,404,287	+		BBR_RS20420	0.12	-0.3
2,404,287	+		BBR_RS20420	0.12	+1.2
2,404,292	+		BBR_RS20420	0.13	+0.2
2,404,301	+		BBR_RS20420	0.14	-1.8
2,404,341	+		BBR_RS20420	0.18	-0.4
2,404,348	+		BBR_RS20420	0.19	+0.3
2,404,350	+		BBR_RS20420	0.19	-0.1
2,404,367	+		BBR_RS20420	0.21	-0.4
2,404,367	+		BBR_RS20420	0.21	-1.6
2,404,399	+		BBR_RS20420	0.25	-1.5
2,404,446	+		BBR_RS20420	0.30	-2.8
2,404,446	+		BBR_RS20420	0.30	+1.3
2,404,446	+		BBR_RS20420	0.30	-2.2
2,404,459	+		BBR_RS20420	0.31	-1.9
2,404,486	+		BBR_RS20420	0.34	-0.3
2,404,517	+		BBR_RS20420	0.37	-0.3
2,404,527	+		BBR_RS20420	0.38	-3.1
2,404,558	+		BBR_RS20420	0.42	+0.6
2,404,558	+		BBR_RS20420	0.42	-0.5
2,404,581	+		BBR_RS20420	0.44	-0.7
2,404,581	+		BBR_RS20420	0.44	-0.2
2,404,598	+		BBR_RS20420	0.46	+1.5
2,404,617	+		BBR_RS20420	0.48	-0.7
2,404,617	+		BBR_RS20420	0.48	-0.8
2,404,640	+		BBR_RS20420	0.50	-1.1
2,404,653	-		BBR_RS20420	0.52	-3.5
2,404,661	+		BBR_RS20420	0.53	-1.8
2,404,686	+		BBR_RS20420	0.55	-2.3
2,404,704	+		BBR_RS20420	0.57	-1.3
2,404,704	+		BBR_RS20420	0.57	-2.7
2,404,705	+		BBR_RS20420	0.57	-1.2
2,404,705	+		BBR_RS20420	0.57	-2.0
2,404,705	+		BBR_RS20420	0.57	-1.6
2,404,712	-		BBR_RS20420	0.58	-1.3
2,404,712	-		BBR_RS20420	0.58	-0.1
2,404,713	-		BBR_RS20420	0.58	+0.9
2,404,737	+		BBR_RS20420	0.61	-1.6
2,404,737	+		BBR_RS20420	0.61	-1.2
2,404,737	+		BBR_RS20420	0.61	-0.8
2,404,737	+		BBR_RS20420	0.61	-1.6
2,404,737	+		BBR_RS20420	0.61	+2.2
2,404,737	+		BBR_RS20420	0.61	-1.4
2,404,737	+		BBR_RS20420	0.61	-0.9
2,404,745	-		BBR_RS20420	0.62	+0.7
2,404,745	-		BBR_RS20420	0.62	-1.8
2,404,745	-		BBR_RS20420	0.62	-1.3
2,404,765	+		BBR_RS20420	0.64	-2.1
2,404,800	+		BBR_RS20420	0.68	-2.5
2,404,812	+		BBR_RS20420	0.69	-1.6
2,404,837	+		BBR_RS20420	0.72	-1.3
2,404,866	+		BBR_RS20420	0.75	-1.5
2,404,878	+		BBR_RS20420	0.76	-1.0
2,404,923	+		BBR_RS20420	0.81	-1.0
2,404,923	+		BBR_RS20420	0.81	+0.1
2,404,923	+		BBR_RS20420	0.81	-0.5
2,404,923	+		BBR_RS20420	0.81	-1.2
2,404,923	+		BBR_RS20420	0.81	-0.8
2,404,923	+		BBR_RS20420	0.81	-1.5
2,404,923	+		BBR_RS20420	0.81	-2.5
2,404,930	+		BBR_RS20420	0.82	-1.7
2,405,050	+				-4.2
2,405,050	+				-5.1
2,405,050	+				-2.8
2,405,055	+				-1.7
2,405,073	+				+0.7
2,405,073	+				+1.5
2,405,078	+				+1.3
2,405,081	+				-0.5
2,405,095	-				+0.5
2,405,097	-				+0.1
2,405,101	+				-3.0
2,405,115	+				-3.0
2,405,115	+				-3.0
2,405,127	+				-4.3
2,405,157	+				+0.8
2,405,157	+				-3.0
2,405,162	+				+0.0
2,405,162	+				-1.9
2,405,165	-				-3.4
2,406,018	-				+1.5
2,406,018	-				-1.3
2,406,023	+				+3.9
2,406,039	-				-0.8
2,406,053	-				-1.4
2,406,053	-				-1.0
2,406,053	-				-3.2
2,406,055	+				+0.1
2,406,058	-				-1.1
2,406,069	-				-1.7
2,406,072	+				+0.3
2,406,082	-				-0.8
2,406,086	+				-3.7
2,406,086	+				-4.4
2,406,090	-				-0.7
2,406,090	-				+1.9
2,406,124	+				+1.5
2,406,125	+				-4.0
2,406,141	+				+3.5
2,406,164	+		BBR_RS20430	0.12	+0.3
2,406,177	-		BBR_RS20430	0.14	+1.9
2,406,195	-		BBR_RS20430	0.17	+1.7
2,406,221	+		BBR_RS20430	0.21	+2.2
2,406,255	+		BBR_RS20430	0.26	+2.5
2,406,288	+		BBR_RS20430	0.31	+3.5
2,406,310	-		BBR_RS20430	0.35	+2.5
2,406,333	+		BBR_RS20430	0.39	+1.3
2,406,386	+		BBR_RS20430	0.47	+3.5
2,406,394	-		BBR_RS20430	0.48	+1.7
2,406,494	+		BBR_RS20430	0.64	+2.9
2,406,502	-		BBR_RS20430	0.65	+1.7
2,406,502	-		BBR_RS20430	0.65	+2.5
2,406,578	-		BBR_RS20430	0.77	+1.9
2,406,582	+		BBR_RS20430	0.78	+2.5
2,406,600	+		BBR_RS20430	0.81	+1.5
2,406,650	+		BBR_RS20430	0.89	-1.7
2,406,658	-				-2.5
2,406,658	-				-2.4
2,406,700	+				+0.6
2,406,701	+				+2.3
2,406,701	+				+2.7
2,406,703	-				+0.3
2,406,703	-				-2.4
2,406,708	-				+0.3
2,406,708	-				+0.6
2,406,708	-				-1.7
2,406,709	-				-0.2
2,406,711	+				+1.1
2,406,714	+				+3.5
2,406,726	-				+2.1
2,406,739	+				+3.2
2,406,739	+				+0.1
2,406,739	+				+2.8
2,406,747	-				-1.2
2,406,747	-				+0.9
2,406,747	-				+3.2
2,406,747	-				+0.6
2,406,749	+				-0.8
2,406,749	+				+3.0
2,406,757	-				+0.7
2,406,757	-				+3.4
2,406,757	-				+0.6
2,406,765	+				+1.0
2,406,767	-				+0.6
2,406,777	-				+1.0
2,406,793	+				+0.1
2,406,793	+				-1.4
2,406,793	+				-0.0
2,406,793	+				+0.9
2,406,793	+				+0.5
2,406,797	+				+0.7
2,406,799	+				-1.0
2,406,799	+				+0.6
2,406,799	+				+0.9
2,406,799	+				-2.0
2,406,799	+				+2.3
2,406,799	+				+2.4
2,406,799	+				-1.4
2,406,799	+				-0.6
2,406,801	-				-0.4
2,406,801	-				-0.3
2,406,801	-				-0.3
2,406,807	-				+0.2
2,406,807	-				+1.2
2,406,807	-				+0.1
2,406,807	-				-0.0
2,406,807	-				-0.7
2,406,807	-				-0.8
2,406,807	-				+0.6
2,406,807	-				+0.6
2,406,807	-				+0.4
2,406,812	+				+0.7
2,406,815	-				+0.4
2,406,815	-				-0.5
2,406,815	-				-1.4
2,406,815	-				-0.1
2,406,815	-				+0.5
2,406,817	+				+1.0
2,406,817	+				+0.8
2,406,820	+				+0.3
2,406,825	-				+0.3
2,406,825	-				-0.8
2,406,838	+				+1.6
2,406,841	-				+1.0
2,406,846	-				+0.4
2,406,846	-				+0.2
2,406,846	-				+0.1
2,406,846	-				+0.2
2,406,864	+				+0.1