Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20330

Experiment: cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
2,379,889	+		BBR_RS20320	0.60	+8.1
2,379,890	+		BBR_RS20320	0.60	+5.2
2,379,892	-		BBR_RS20320	0.60	+5.0
2,379,892	-		BBR_RS20320	0.60	+5.1
2,379,894	+		BBR_RS20320	0.60	+5.8
2,379,894	+		BBR_RS20320	0.60	+8.7
2,379,902	-		BBR_RS20320	0.61	+4.9
2,379,902	-		BBR_RS20320	0.61	+5.3
2,379,909	+		BBR_RS20320	0.61	+7.1
2,379,945	-		BBR_RS20320	0.64	+5.8
2,379,945	-		BBR_RS20320	0.64	+4.9
2,379,948	+		BBR_RS20320	0.64	+5.7
2,379,948	+		BBR_RS20320	0.64	+5.6
2,379,966	-		BBR_RS20320	0.65	+5.4
2,379,966	-		BBR_RS20320	0.65	+5.2
2,379,966	-		BBR_RS20320	0.65	+5.4
2,379,974	-		BBR_RS20320	0.66	-2.1
2,379,975	-		BBR_RS20320	0.66	+5.3
2,379,975	-		BBR_RS20320	0.66	+5.3
2,379,996	+		BBR_RS20320	0.68	+5.4
2,380,004	+		BBR_RS20320	0.68	+3.5
2,380,012	-		BBR_RS20320	0.69	+4.9
2,380,012	-		BBR_RS20320	0.69	+4.7
2,380,012	-		BBR_RS20320	0.69	+4.9
2,380,054	-		BBR_RS20320	0.72	+6.9
2,380,054	-		BBR_RS20320	0.72	+5.3
2,380,063	-		BBR_RS20320	0.72	+5.3
2,380,065	+		BBR_RS20320	0.73	+5.5
2,380,087	-		BBR_RS20320	0.74	+5.4
2,380,087	-		BBR_RS20320	0.74	+5.5
2,380,088	-		BBR_RS20320	0.74	+5.5
2,380,101	+		BBR_RS20320	0.75	+4.2
2,380,103	+		BBR_RS20320	0.75	+4.7
2,380,103	+		BBR_RS20320	0.75	+4.8
2,380,103	+		BBR_RS20320	0.75	+3.8
2,380,103	+		BBR_RS20320	0.75	+4.8
2,380,103	+		BBR_RS20320	0.75	+4.8
2,380,103	+		BBR_RS20320	0.75	+3.1
2,380,103	+		BBR_RS20320	0.75	+4.4
2,380,111	-		BBR_RS20320	0.76	+5.6
2,380,111	-		BBR_RS20320	0.76	+5.3
2,380,111	-		BBR_RS20320	0.76	+5.2
2,380,111	-		BBR_RS20320	0.76	+5.5
2,380,111	-		BBR_RS20320	0.76	+5.9
2,380,111	-		BBR_RS20320	0.76	+5.3
2,380,111	-		BBR_RS20320	0.76	+4.8
2,380,111	-		BBR_RS20320	0.76	+6.5
2,380,111	-		BBR_RS20320	0.76	+5.0
2,380,111	-		BBR_RS20320	0.76	+4.8
2,380,111	-		BBR_RS20320	0.76	+2.5
2,380,111	-		BBR_RS20320	0.76	+5.2
2,380,111	-		BBR_RS20320	0.76	+5.1
2,380,111	-		BBR_RS20320	0.76	+5.6
2,380,111	-		BBR_RS20320	0.76	+5.7
2,380,111	-		BBR_RS20320	0.76	+5.7
2,380,146	-		BBR_RS20320	0.78	+4.3
2,380,151	-		BBR_RS20320	0.79	+3.0
2,380,155	+		BBR_RS20320	0.79	+5.6
2,380,160	+		BBR_RS20320	0.79	-3.8
2,380,160	+		BBR_RS20320	0.79	+4.6
2,380,160	+		BBR_RS20320	0.79	-2.9
2,380,162	-		BBR_RS20320	0.80	+4.9
2,380,168	-		BBR_RS20320	0.80	+3.6
2,380,174	-		BBR_RS20320	0.80	+4.2
2,380,175	-		BBR_RS20320	0.81	+5.3
2,380,184	-		BBR_RS20320	0.81	+5.5
2,380,186	+		BBR_RS20320	0.81	+3.3
2,380,212	-		BBR_RS20320	0.83	+1.9
2,380,214	-		BBR_RS20320	0.83	+5.3
2,380,214	-		BBR_RS20320	0.83	+3.5
2,380,214	-		BBR_RS20320	0.83	+5.2
2,380,214	-		BBR_RS20320	0.83	+5.6
2,380,214	-		BBR_RS20320	0.83	+5.3
2,380,214	-		BBR_RS20320	0.83	+5.3
2,380,221	-		BBR_RS20320	0.84	+6.1
2,380,229	-		BBR_RS20320	0.84	+5.2
2,380,229	-		BBR_RS20320	0.84	+5.6
2,380,254	+		BBR_RS20320	0.86	+5.2
2,380,262	-		BBR_RS20320	0.87	+2.6
2,380,262	-		BBR_RS20320	0.87	+5.0
2,380,262	-		BBR_RS20320	0.87	+5.1
2,380,316	-				+5.3
2,380,321	-				+5.4
2,380,321	-				+4.1
2,380,337	-				+4.9
2,380,425	-				+5.3
2,380,444	-				+5.4
2,380,444	-				+6.1
2,380,446	-				+5.6
2,380,451	+				+5.5
2,380,451	+				+6.0
2,380,451	+				+8.8
2,380,451	+				+5.4
2,380,451	+				+9.1
2,380,459	-				+5.9
2,380,459	-				+5.6
2,380,459	-				+5.6
2,380,501	+				+5.9
2,380,514	-				+5.8
2,380,514	-				+5.9
2,380,515	+				+6.4
2,380,524	-				+5.4
2,380,525	-				+5.2
2,380,528	-				+3.8
2,380,554	+				+5.2
2,380,554	+				+5.5
2,380,554	+				+5.5
2,380,554	+				+9.1
2,380,554	+				+8.7
2,380,554	+				+5.6
2,380,554	+				+5.5
2,380,554	+				+5.7
2,380,554	+				+7.0
2,380,554	+				+4.5
2,380,554	-				+6.2
2,380,560	-				+5.7
2,380,562	+				+6.0
2,380,562	-				+5.3
2,380,562	-				+5.7
2,380,562	-				+6.4
2,380,562	-				+5.0
2,380,562	-				+5.4
2,380,562	-				+4.8
2,380,562	-				+5.3
2,380,562	-				+5.4
2,380,570	+		BBR_RS20325	0.10	+5.7
2,380,573	-		BBR_RS20325	0.11	+6.2
2,380,575	+		BBR_RS20325	0.12	+5.8
2,380,578	-		BBR_RS20325	0.13	+5.8
2,380,578	-		BBR_RS20325	0.13	+5.6
2,380,578	-		BBR_RS20325	0.13	+5.4
2,380,597	+		BBR_RS20325	0.19	+3.5
2,380,597	+		BBR_RS20325	0.19	+7.0
2,380,605	-		BBR_RS20325	0.22	+6.4
2,380,611	+		BBR_RS20325	0.24	+5.6
2,380,611	+		BBR_RS20325	0.24	+4.4
2,380,611	+		BBR_RS20325	0.24	+4.7
2,380,619	-		BBR_RS20325	0.27	+4.7
2,380,619	-		BBR_RS20325	0.27	+4.8
2,380,619	-		BBR_RS20325	0.27	+5.1
2,380,619	-		BBR_RS20325	0.27	+7.8
2,380,619	-		BBR_RS20325	0.27	+5.8
2,380,619	-		BBR_RS20325	0.27	+5.0
2,380,621	+		BBR_RS20325	0.27	+5.9
2,380,624	-		BBR_RS20325	0.28	+8.9
2,380,629	-		BBR_RS20325	0.30	+6.9
2,380,629	-		BBR_RS20325	0.30	+5.9
2,380,629	-		BBR_RS20325	0.30	+5.6
2,380,642	+		BBR_RS20325	0.34	+5.6
2,380,649	-		BBR_RS20325	0.37	+6.0
2,380,649	-		BBR_RS20325	0.37	+5.8
2,380,650	-		BBR_RS20325	0.37	+5.1
2,380,650	-		BBR_RS20325	0.37	+6.5
2,380,672	-		BBR_RS20325	0.44	+3.0
2,380,672	-		BBR_RS20325	0.44	+5.9
2,380,687	-		BBR_RS20325	0.49	+5.3
2,380,689	+		BBR_RS20325	0.50	-2.6
2,380,697	-		BBR_RS20325	0.53	+5.8
2,380,697	-		BBR_RS20325	0.53	+6.2
2,380,699	+		BBR_RS20325	0.54	+4.6
2,380,699	+		BBR_RS20325	0.54	+5.4
2,380,707	-		BBR_RS20325	0.56	+4.7
2,380,712	-		BBR_RS20325	0.58	+5.8
2,380,712	-		BBR_RS20325	0.58	+5.4
2,380,726	-		BBR_RS20325	0.63	+5.1
2,380,730	-		BBR_RS20325	0.64	+6.3
2,380,749	+		BBR_RS20325	0.70	+6.8
2,380,749	+		BBR_RS20325	0.70	+5.2
2,380,749	+		BBR_RS20325	0.70	+5.8
2,380,749	+		BBR_RS20325	0.70	+6.8
2,380,752	-		BBR_RS20325	0.71	+5.9
2,380,752	-		BBR_RS20325	0.71	+9.1
2,380,752	-		BBR_RS20325	0.71	+5.7
2,380,752	-		BBR_RS20325	0.71	+6.3
2,380,754	+		BBR_RS20325	0.72	+5.8
2,380,757	-		BBR_RS20325	0.73	+9.0
2,380,757	-		BBR_RS20325	0.73	+6.1
2,380,757	-		BBR_RS20325	0.73	+6.0
2,380,757	-		BBR_RS20325	0.73	+8.8
2,380,772	-		BBR_RS20325	0.78	+5.7
2,380,801	+		BBR_RS20325	0.88	+6.2
2,380,801	+		BBR_RS20325	0.88	+6.9
2,380,801	+		BBR_RS20325	0.88	+5.3
2,380,814	-				+6.1
2,380,819	-				+5.3
2,380,820	+				+6.1
2,380,820	+				+5.5
2,380,821	-				+6.2
2,380,823	+				+6.3
2,380,830	-				+6.2
2,380,838	+				+5.6
2,380,882	+				+6.0
2,380,888	+				+9.4
2,380,888	+				+9.4
2,380,891	-				+5.0
2,380,914	+				+6.1
2,380,927	+				+6.5
2,380,927	+				+5.9
2,380,990	-		BBR_RS20330	0.24	+5.9
2,381,015	+		BBR_RS20330	0.30	+5.8
2,381,023	-		BBR_RS20330	0.32	+6.0
2,381,041	+		BBR_RS20330	0.36	+4.7
2,381,048	-		BBR_RS20330	0.37	+6.8
2,381,049	-		BBR_RS20330	0.38	+6.6
2,381,049	-		BBR_RS20330	0.38	+5.9
2,381,073	-		BBR_RS20330	0.43	+3.9
2,381,074	-		BBR_RS20330	0.43	+5.8
2,381,074	-		BBR_RS20330	0.43	+6.3
2,381,074	-		BBR_RS20330	0.43	+5.7
2,381,099	-		BBR_RS20330	0.49	+4.1
2,381,099	-		BBR_RS20330	0.49	+6.2
2,381,099	-		BBR_RS20330	0.49	+6.2
2,381,103	+		BBR_RS20330	0.50	+5.7
2,381,104	-		BBR_RS20330	0.50	+6.5
2,381,104	-		BBR_RS20330	0.50	+6.5
2,381,106	-		BBR_RS20330	0.51	+6.7
2,381,106	-		BBR_RS20330	0.51	+6.2
2,381,111	-		BBR_RS20330	0.52	+6.2
2,381,111	-		BBR_RS20330	0.52	+6.1
2,381,130	-		BBR_RS20330	0.56	+6.7
2,381,130	-		BBR_RS20330	0.56	+5.5
2,381,133	+		BBR_RS20330	0.57	+6.8
2,381,133	+		BBR_RS20330	0.57	+6.0
2,381,133	+		BBR_RS20330	0.57	+6.9
2,381,141	-		BBR_RS20330	0.59	+5.5
2,381,141	-		BBR_RS20330	0.59	+6.6
2,381,141	-		BBR_RS20330	0.59	+2.3
2,381,142	-		BBR_RS20330	0.59	+4.1
2,381,154	-		BBR_RS20330	0.62	+6.5
2,381,162	-		BBR_RS20330	0.64	+6.8
2,381,162	-		BBR_RS20330	0.64	+3.9
2,381,162	-		BBR_RS20330	0.64	+6.4
2,381,169	-		BBR_RS20330	0.65	+6.9
2,381,174	-		BBR_RS20330	0.66	+6.4
2,381,186	+		BBR_RS20330	0.69	+6.4
2,381,194	-		BBR_RS20330	0.71	+5.2
2,381,201	+		BBR_RS20330	0.73	+5.8
2,381,204	-		BBR_RS20330	0.73	+9.7
2,381,204	-		BBR_RS20330	0.73	+9.8
2,381,205	+		BBR_RS20330	0.74	+9.7
2,381,209	-		BBR_RS20330	0.74	+5.5
2,381,209	-		BBR_RS20330	0.74	+6.1
2,381,209	-		BBR_RS20330	0.74	+6.2
2,381,211	+		BBR_RS20330	0.75	+5.5
2,381,219	-		BBR_RS20330	0.77	+7.3
2,381,243	-		BBR_RS20330	0.82	+5.3
2,381,251	+		BBR_RS20330	0.84	+5.9
2,381,266	-		BBR_RS20330	0.88	+9.6
2,381,270	+		BBR_RS20330	0.89	+6.3
2,381,278	-				+6.6
2,381,278	-				+6.8
2,381,278	-				+7.1
2,381,278	-				+6.3
2,381,343	+				+9.9
2,381,343	+				+4.2
2,381,350	-				+6.0
2,381,351	-				+5.5
2,381,351	-				+6.5
2,381,400	-				+7.5
2,381,482	+				+0.8
2,381,483	-				+3.7
2,381,491	+				+2.0
2,381,499	-				+0.5
2,381,509	-				-0.1
2,381,527	+				+1.7
2,381,527	+				+1.0
2,381,527	+				+1.3
2,381,535	+				+0.3
2,381,535	+				+1.8
2,381,535	+				+2.3
2,381,535	-				+3.7
2,381,537	+				+0.9
2,381,537	+				+1.2
2,381,537	+				+1.5
2,381,537	+				+1.8
2,381,545	-				+3.6
2,381,545	-				-1.5
2,381,590	-				+1.0
2,381,594	+				+1.4
2,381,595	+				+1.7
2,381,600	+				+0.8
2,381,603	-				+0.6
2,381,630	-				-2.3
2,381,632	+				+1.3
2,381,632	+				+0.1
2,381,644	+				+0.5
2,381,644	+				+0.6
2,381,644	+				-0.9
2,381,644	+				+2.1
2,381,644	+				+2.6
2,381,644	+				+2.2
2,381,644	+				+1.0
2,381,644	+				-0.2
2,381,654	+				+4.1
2,381,662	-				+0.7
2,381,684	+				+4.2
2,381,684	+				+1.7
2,381,684	+				+0.6
2,381,688	+				+1.7
2,381,688	+				+1.0
2,381,692	-				-1.0
2,381,696	-				-0.1
2,381,716	+		BBR_RS20335	0.10	+1.4
2,381,716	+		BBR_RS20335	0.10	+1.2
2,381,724	-		BBR_RS20335	0.11	+1.5
2,381,726	+		BBR_RS20335	0.11	+2.1
2,381,734	-		BBR_RS20335	0.12	-0.3
2,381,734	-		BBR_RS20335	0.12	+0.7
2,381,734	-		BBR_RS20335	0.12	-0.2
2,381,734	-		BBR_RS20335	0.12	+1.5
2,381,734	-		BBR_RS20335	0.12	-2.4
2,381,734	-		BBR_RS20335	0.12	+0.7
2,381,736	+		BBR_RS20335	0.12	+0.4
2,381,747	-		BBR_RS20335	0.13	-1.6
2,381,767	+		BBR_RS20335	0.15	-0.0
2,381,806	-		BBR_RS20335	0.18	+0.5
2,381,833	-		BBR_RS20335	0.20	+1.8
2,381,834	+		BBR_RS20335	0.20	+1.0
2,381,839	-		BBR_RS20335	0.21	+3.7
2,381,858	+		BBR_RS20335	0.22	+1.1
2,381,866	-		BBR_RS20335	0.23	+0.3
2,381,878	-		BBR_RS20335	0.24	-0.7
2,381,878	-		BBR_RS20335	0.24	-0.4
2,381,935	+		BBR_RS20335	0.29	+0.3
2,381,943	-		BBR_RS20335	0.30	+0.3
2,381,943	-		BBR_RS20335	0.30	-0.9
2,381,987	+		BBR_RS20335	0.34	+1.3
2,381,993	+		BBR_RS20335	0.34	-0.8
2,381,993	+		BBR_RS20335	0.34	+0.2
2,381,995	+		BBR_RS20335	0.34	+1.4
2,381,995	-		BBR_RS20335	0.34	+0.4
2,382,003	-		BBR_RS20335	0.35	+1.4
2,382,003	-		BBR_RS20335	0.35	+0.1
2,382,003	-		BBR_RS20335	0.35	+2.0
2,382,005	-		BBR_RS20335	0.35	-0.1
2,382,011	+		BBR_RS20335	0.36	-1.2
2,382,012	-		BBR_RS20335	0.36	+1.1
2,382,012	-		BBR_RS20335	0.36	+0.9
2,382,017	-		BBR_RS20335	0.36	+0.1
2,382,019	-		BBR_RS20335	0.36	-0.2
2,382,038	-		BBR_RS20335	0.38	-0.3
2,382,038	-		BBR_RS20335	0.38	-0.3
2,382,038	-		BBR_RS20335	0.38	+0.4
2,382,038	-		BBR_RS20335	0.38	+4.2
2,382,047	+		BBR_RS20335	0.39	-0.8
2,382,053	-		BBR_RS20335	0.39	+0.5
2,382,053	-		BBR_RS20335	0.39	+3.7
2,382,053	-		BBR_RS20335	0.39	+3.7
2,382,061	+		BBR_RS20335	0.40	+0.1
2,382,091	-		BBR_RS20335	0.42	+1.6
2,382,099	+		BBR_RS20335	0.43	+0.4
2,382,107	-		BBR_RS20335	0.44	+0.4
2,382,107	-		BBR_RS20335	0.44	+1.0
2,382,111	+		BBR_RS20335	0.44	-1.3
2,382,116	+		BBR_RS20335	0.45	+0.4
2,382,116	+		BBR_RS20335	0.45	+1.0
2,382,123	-		BBR_RS20335	0.45	+0.1
2,382,126	-		BBR_RS20335	0.45	+3.2
2,382,126	-		BBR_RS20335	0.45	+3.9
2,382,126	-		BBR_RS20335	0.45	+0.4
2,382,126	-		BBR_RS20335	0.45	-1.1
2,382,127	+		BBR_RS20335	0.46	-0.3
2,382,127	+		BBR_RS20335	0.46	+1.0
2,382,131	-		BBR_RS20335	0.46	-1.7
2,382,131	-		BBR_RS20335	0.46	-0.5
2,382,134	+		BBR_RS20335	0.46	+1.7
2,382,134	-		BBR_RS20335	0.46	+0.9
2,382,139	+		BBR_RS20335	0.47	+3.6
2,382,142	-		BBR_RS20335	0.47	-0.7
2,382,142	-		BBR_RS20335	0.47	-0.8
2,382,149	+		BBR_RS20335	0.47	+0.1
2,382,153	-		BBR_RS20335	0.48	+3.6
2,382,153	-		BBR_RS20335	0.48	+3.3
2,382,172	+		BBR_RS20335	0.49	+1.1
2,382,186	+		BBR_RS20335	0.51	+2.8
2,382,207	+		BBR_RS20335	0.52	-0.3
2,382,207	+		BBR_RS20335	0.52	+0.3
2,382,207	+		BBR_RS20335	0.52	+0.8
2,382,209	+		BBR_RS20335	0.53	+0.3
2,382,215	-		BBR_RS20335	0.53	-0.4
2,382,219	+		BBR_RS20335	0.53	+0.4
2,382,219	+		BBR_RS20335	0.53	+1.7
2,382,227	-		BBR_RS20335	0.54	+3.2
2,382,227	-		BBR_RS20335	0.54	-2.3
2,382,227	-		BBR_RS20335	0.54	+0.5
2,382,227	-		BBR_RS20335	0.54	+0.2
2,382,239	-		BBR_RS20335	0.55	-0.4
2,382,286	+		BBR_RS20335	0.59	-0.0
2,382,292	+		BBR_RS20335	0.60	-0.4
2,382,294	-		BBR_RS20335	0.60	-0.8
2,382,294	-		BBR_RS20335	0.60	-0.7
2,382,294	-		BBR_RS20335	0.60	+0.8
2,382,297	+		BBR_RS20335	0.60	+0.6