Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19065

Experiment: cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
2,053,911	-		BBR_RS19060	0.46	-0.6
2,053,911	-		BBR_RS19060	0.46	-1.7
2,053,942	-		BBR_RS19060	0.48	+0.0
2,053,959	+		BBR_RS19060	0.50	+0.2
2,053,959	+		BBR_RS19060	0.50	-0.9
2,053,967	-		BBR_RS19060	0.50	+3.0
2,053,967	-		BBR_RS19060	0.50	-0.8
2,053,969	+		BBR_RS19060	0.50	-0.2
2,053,969	+		BBR_RS19060	0.50	-2.2
2,053,974	+		BBR_RS19060	0.50	-2.1
2,053,977	-		BBR_RS19060	0.51	+0.3
2,053,977	-		BBR_RS19060	0.51	+0.2
2,053,978	-		BBR_RS19060	0.51	+3.0
2,054,007	+		BBR_RS19060	0.53	-0.3
2,054,014	+		BBR_RS19060	0.53	-1.0
2,054,014	+		BBR_RS19060	0.53	+1.0
2,054,015	-		BBR_RS19060	0.53	+1.3
2,054,015	-		BBR_RS19060	0.53	+0.6
2,054,040	+		BBR_RS19060	0.55	-0.2
2,054,063	-		BBR_RS19060	0.56	+0.8
2,054,066	+		BBR_RS19060	0.57	+0.1
2,054,070	+		BBR_RS19060	0.57	+0.8
2,054,074	-		BBR_RS19060	0.57	+1.1
2,054,106	-		BBR_RS19060	0.59	+2.8
2,054,106	-		BBR_RS19060	0.59	+0.3
2,054,111	-		BBR_RS19060	0.59	+0.7
2,054,136	-		BBR_RS19060	0.61	-1.2
2,054,159	+		BBR_RS19060	0.63	-0.3
2,054,170	+		BBR_RS19060	0.63	+0.1
2,054,182	+		BBR_RS19060	0.64	-0.4
2,054,193	+		BBR_RS19060	0.65	+0.2
2,054,201	-		BBR_RS19060	0.65	-0.4
2,054,203	+		BBR_RS19060	0.65	-0.7
2,054,253	+		BBR_RS19060	0.69	-2.3
2,054,253	+		BBR_RS19060	0.69	-0.1
2,054,275	-		BBR_RS19060	0.70	+3.5
2,054,306	+		BBR_RS19060	0.72	+1.2
2,054,307	-		BBR_RS19060	0.72	-0.4
2,054,307	-		BBR_RS19060	0.72	+2.9
2,054,314	-		BBR_RS19060	0.73	-0.7
2,054,345	-		BBR_RS19060	0.75	+0.6
2,054,355	-		BBR_RS19060	0.75	+0.7
2,054,360	-		BBR_RS19060	0.76	-2.0
2,054,404	-		BBR_RS19060	0.79	-1.1
2,054,412	-		BBR_RS19060	0.79	+0.5
2,054,423	+		BBR_RS19060	0.80	+2.6
2,054,430	-		BBR_RS19060	0.80	+0.1
2,054,432	+		BBR_RS19060	0.80	-0.2
2,054,432	+		BBR_RS19060	0.80	+0.1
2,054,432	+		BBR_RS19060	0.80	+0.8
2,054,432	+		BBR_RS19060	0.80	-0.7
2,054,436	+		BBR_RS19060	0.81	+3.3
2,054,440	-		BBR_RS19060	0.81	-0.2
2,054,440	-		BBR_RS19060	0.81	-2.3
2,054,442	+		BBR_RS19060	0.81	-1.0
2,054,442	+		BBR_RS19060	0.81	+0.8
2,054,443	-		BBR_RS19060	0.81	-0.4
2,054,448	+		BBR_RS19060	0.82	-0.3
2,054,448	+		BBR_RS19060	0.82	+0.2
2,054,448	+		BBR_RS19060	0.82	+0.0
2,054,450	-		BBR_RS19060	0.82	-0.5
2,054,456	-		BBR_RS19060	0.82	+0.1
2,054,456	-		BBR_RS19060	0.82	-0.7
2,054,461	-		BBR_RS19060	0.82	-0.2
2,054,478	-		BBR_RS19060	0.83	-0.5
2,054,499	-		BBR_RS19060	0.85	-0.0
2,054,499	-		BBR_RS19060	0.85	+0.7
2,054,507	-		BBR_RS19060	0.85	-1.1
2,054,507	-		BBR_RS19060	0.85	-0.3
2,054,520	-		BBR_RS19060	0.86	-0.1
2,054,570	-		BBR_RS19060	0.90	+0.8
2,054,570	-		BBR_RS19060	0.90	+0.0
2,054,584	+				-2.6
2,054,595	-				-0.4
2,054,595	-				-0.8
2,054,611	+				+0.8
2,054,623	-				+2.7
2,054,623	-				-0.4
2,054,631	+				-1.7
2,054,631	-				+2.9
2,054,636	+				-0.2
2,054,644	-				+0.4
2,054,653	-				+0.3
2,054,653	-				-1.6
2,054,653	-				-1.4
2,054,653	-				+0.2
2,054,655	+				+0.3
2,054,681	-				-0.8
2,054,681	-				-0.3
2,054,681	-				-0.1
2,054,681	-				+2.3
2,054,681	-				+1.1
2,054,681	-				-1.9
2,054,699	+				-1.5
2,054,726	-				-2.3
2,054,731	+				-1.0
2,054,739	-				+3.2
2,054,739	-				+2.2
2,054,739	-				-0.3
2,054,741	+				+1.2
2,054,749	-				-1.9
2,054,749	-				+1.0
2,054,749	-				-1.3
2,054,749	-				+0.9
2,054,759	-				+0.2
2,054,819	+				-0.2
2,054,827	-				+1.9
2,054,827	-				-0.8
2,054,896	-				-0.5
2,054,907	-				+2.9
2,054,907	-				+0.9
2,056,114	-				-0.3
2,056,151	-				-0.2
2,056,151	-				-0.7
2,056,180	-				+0.4
2,056,226	-				+0.1
2,056,226	-				+0.9
2,056,309	-		BBR_RS19070	0.43	-0.5
2,056,370	-		BBR_RS19070	0.80	-1.6
2,056,786	-		BBR_RS21070	0.28	+0.6
2,056,788	-		BBR_RS21070	0.29	-1.2
2,056,822	-		BBR_RS21070	0.43	-1.2
2,056,827	-		BBR_RS21070	0.46	+0.3
2,056,838	+		BBR_RS21070	0.50	+1.0
2,056,856	-		BBR_RS21070	0.58	+0.4
2,056,856	-		BBR_RS21070	0.58	-1.9
2,056,856	-		BBR_RS21070	0.58	-0.2
2,056,856	-		BBR_RS21070	0.58	-0.7
2,056,876	+		BBR_RS21070	0.66	+0.6
2,056,887	+		BBR_RS21070	0.71	+0.9
2,056,905	+		BBR_RS21070	0.78	+2.5
2,056,918	-		BBR_RS21070	0.84	+0.0
2,056,923	+		BBR_RS21070	0.86	-0.3
2,056,923	+		BBR_RS21070	0.86	-0.1
2,056,923	+		BBR_RS21070	0.86	-2.2
2,056,931	-		BBR_RS21070	0.89	-0.1
2,056,931	-		BBR_RS21070	0.89	+0.1
2,056,933	+				+0.3
2,056,933	+				+1.3
2,056,933	+				+1.5
2,056,933	+				-0.6
2,056,933	+				-0.7
2,056,933	+				-1.1
2,056,933	+				+2.8
2,056,933	+				+0.9
2,056,933	+				+0.7
2,056,933	+				-0.5
2,056,941	-				+0.6
2,056,941	-				+0.1
2,056,941	-				-0.7
2,056,941	-				-0.9
2,056,941	-				+3.2
2,056,941	-				+0.2
2,056,941	-				-1.0
2,056,944	+				-1.2
2,056,966	-				+1.3
2,056,990	-				+0.2
2,057,003	+				+1.8
2,057,003	+				+0.4
2,057,003	+				+0.1
2,057,010	+				+1.0
2,057,011	-				-1.3
2,057,011	-				-2.3
2,057,028	+				-0.1
2,057,036	+				+1.0
2,057,036	-				+0.8
2,057,050	-				-0.4
2,057,060	-				-0.4
2,057,060	-				-1.2
2,057,073	-				-0.8
2,057,112	-				+0.5
2,057,114	-				-1.1