Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18030

Experiment: cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
1,833,805	-		BBR_RS18025	0.23	-0.6
1,833,826	+		BBR_RS18025	0.25	+3.1
1,833,858	+		BBR_RS18025	0.29	-1.0
1,833,858	+		BBR_RS18025	0.29	-1.6
1,833,858	+		BBR_RS18025	0.29	-0.4
1,833,863	+		BBR_RS18025	0.29	+2.1
1,833,884	+		BBR_RS18025	0.32	+0.1
1,833,884	+		BBR_RS18025	0.32	-0.4
1,833,884	+		BBR_RS18025	0.32	-0.2
1,833,892	+		BBR_RS18025	0.33	-0.5
1,833,892	+		BBR_RS18025	0.33	-0.9
1,833,926	+		BBR_RS18025	0.37	+1.1
1,833,946	+		BBR_RS18025	0.39	-1.3
1,833,948	+		BBR_RS18025	0.39	+1.7
1,833,959	-		BBR_RS18025	0.40	-0.7
1,833,977	-		BBR_RS18025	0.43	+0.3
1,833,989	-		BBR_RS18025	0.44	+0.1
1,834,045	+		BBR_RS18025	0.50	+1.0
1,834,120	-		BBR_RS18025	0.59	+0.1
1,834,162	+		BBR_RS18025	0.64	-0.0
1,834,186	+		BBR_RS18025	0.67	-0.0
1,834,204	+		BBR_RS18025	0.69	+0.5
1,834,208	-		BBR_RS18025	0.69	+3.3
1,834,222	+		BBR_RS18025	0.71	+0.4
1,834,230	-		BBR_RS18025	0.72	-0.9
1,834,230	-		BBR_RS18025	0.72	+1.0
1,834,230	-		BBR_RS18025	0.72	-1.8
1,834,230	-		BBR_RS18025	0.72	+0.3
1,834,230	-		BBR_RS18025	0.72	+3.4
1,834,230	-		BBR_RS18025	0.72	+2.1
1,834,230	-		BBR_RS18025	0.72	+0.8
1,834,230	-		BBR_RS18025	0.72	-0.3
1,834,232	+		BBR_RS18025	0.72	-0.3
1,834,242	-		BBR_RS18025	0.73	+0.7
1,834,265	-		BBR_RS18025	0.76	+0.9
1,834,274	-		BBR_RS18025	0.77	-0.2
1,834,275	-		BBR_RS18025	0.77	+1.3
1,834,312	-		BBR_RS18025	0.81	+0.5
1,834,348	-		BBR_RS18025	0.85	+1.4
1,834,435	+				-1.0
1,834,508	+		BBR_RS21035	0.45	+3.3
1,834,508	+		BBR_RS21035	0.45	+3.0
1,834,527	+		BBR_RS21035	0.51	+0.0
1,834,537	-		BBR_RS21035	0.55	+0.3
1,834,546	+		BBR_RS21035	0.58	+0.7
1,834,549	-		BBR_RS21035	0.59	+0.7
1,834,605	+		BBR_RS21035	0.78	+0.7
1,834,613	-		BBR_RS21035	0.81	-1.5
1,834,684	-				+1.0
1,834,684	-				+0.4
1,834,684	-				+3.5
1,834,684	-				-0.6
1,834,686	+				+0.5
1,834,719	+				+0.2
1,834,780	-				+2.9
1,834,798	+				-1.7
1,834,798	+				+0.2
1,834,803	+				+0.5
1,834,905	+				+0.3
1,834,919	-				+0.5
1,834,965	+		BBR_RS18030	0.12	+0.2
1,834,984	-		BBR_RS18030	0.13	+0.9
1,834,984	-		BBR_RS18030	0.13	+1.0
1,834,987	+		BBR_RS18030	0.13	+0.4
1,834,995	-		BBR_RS18030	0.14	-0.2
1,835,022	-		BBR_RS18030	0.16	-0.1
1,835,032	-		BBR_RS18030	0.16	-0.4
1,835,034	+		BBR_RS18030	0.16	+0.2
1,835,064	+		BBR_RS18030	0.19	-0.3
1,835,064	+		BBR_RS18030	0.19	-0.5
1,835,072	-		BBR_RS18030	0.19	-0.0
1,835,072	-		BBR_RS18030	0.19	+1.1
1,835,072	-		BBR_RS18030	0.19	-0.3
1,835,072	-		BBR_RS18030	0.19	+3.5
1,835,074	-		BBR_RS18030	0.19	+1.7
1,835,084	+		BBR_RS18030	0.20	-1.2
1,835,108	-		BBR_RS18030	0.22	+0.0
1,835,110	+		BBR_RS18030	0.22	+0.7
1,835,118	-		BBR_RS18030	0.22	+0.2
1,835,118	-		BBR_RS18030	0.22	+0.3
1,835,125	-		BBR_RS18030	0.23	+0.7
1,835,125	-		BBR_RS18030	0.23	+0.1
1,835,127	+		BBR_RS18030	0.23	+0.2
1,835,127	+		BBR_RS18030	0.23	-0.5
1,835,136	+		BBR_RS18030	0.24	-0.8
1,835,192	+		BBR_RS18030	0.28	+0.9
1,835,192	+		BBR_RS18030	0.28	+0.5
1,835,250	-		BBR_RS18030	0.32	-0.9
1,835,253	-		BBR_RS18030	0.32	+0.2
1,835,262	+		BBR_RS18030	0.33	+0.3
1,835,268	-		BBR_RS18030	0.33	-0.4
1,835,270	-		BBR_RS18030	0.33	+0.3
1,835,272	+		BBR_RS18030	0.33	+1.5
1,835,285	-		BBR_RS18030	0.34	-0.2
1,835,287	+		BBR_RS18030	0.34	+3.7
1,835,287	+		BBR_RS18030	0.34	+3.3
1,835,320	+		BBR_RS18030	0.37	-0.1
1,835,352	-		BBR_RS18030	0.39	-0.5
1,835,362	-		BBR_RS18030	0.40	+2.1
1,835,397	+		BBR_RS18030	0.42	+1.0
1,835,402	+		BBR_RS18030	0.42	-0.2
1,835,421	+		BBR_RS18030	0.44	+3.4
1,835,424	-		BBR_RS18030	0.44	-2.1
1,835,429	-		BBR_RS18030	0.44	-0.5
1,835,429	-		BBR_RS18030	0.44	-0.4
1,835,429	-		BBR_RS18030	0.44	+0.6
1,835,429	-		BBR_RS18030	0.44	+0.2
1,835,453	+		BBR_RS18030	0.46	+2.9
1,835,539	+		BBR_RS18030	0.52	+0.5
1,835,557	+		BBR_RS18030	0.53	-0.8
1,835,558	+		BBR_RS18030	0.53	+0.3
1,835,571	-		BBR_RS18030	0.54	-0.9
1,835,666	+		BBR_RS18030	0.61	+0.6
1,835,718	+		BBR_RS18030	0.65	+0.7
1,835,755	+		BBR_RS18030	0.67	-0.2
1,835,763	-		BBR_RS18030	0.68	+1.4
1,835,772	+		BBR_RS18030	0.68	-1.2
1,835,812	+		BBR_RS18030	0.71	-0.4
1,835,820	-		BBR_RS18030	0.72	+2.7
1,835,826	+		BBR_RS18030	0.72	+0.9
1,835,833	+		BBR_RS18030	0.73	-1.3
1,835,846	+		BBR_RS18030	0.74	-0.5
1,835,854	-		BBR_RS18030	0.74	+0.6
1,835,882	-		BBR_RS18030	0.76	+0.6
1,835,896	+		BBR_RS18030	0.77	-0.9
1,835,901	+		BBR_RS18030	0.78	-0.1
1,835,909	-		BBR_RS18030	0.78	+0.2
1,835,910	+		BBR_RS18030	0.78	+0.4
1,835,968	+		BBR_RS18030	0.82	-2.0
1,835,968	+		BBR_RS18030	0.82	+0.2
1,835,987	+		BBR_RS18030	0.84	+0.0
1,835,995	-		BBR_RS18030	0.84	+0.4
1,835,997	-		BBR_RS18030	0.84	+0.6
1,835,997	-		BBR_RS18030	0.84	+0.3
1,835,999	+		BBR_RS18030	0.84	-2.3
1,836,011	+		BBR_RS18030	0.85	+0.2
1,836,012	+		BBR_RS18030	0.85	+0.7
1,836,014	+		BBR_RS18030	0.86	-0.5
1,836,017	+		BBR_RS18030	0.86	-0.5
1,836,019	-		BBR_RS18030	0.86	-0.6
1,836,020	-		BBR_RS18030	0.86	+0.2
1,836,030	-		BBR_RS18030	0.87	-0.4
1,836,060	+		BBR_RS18030	0.89	-1.0
1,836,060	+		BBR_RS18030	0.89	-2.2
1,836,060	+		BBR_RS18030	0.89	-0.6
1,836,060	+		BBR_RS18030	0.89	+0.4
1,836,060	+		BBR_RS18030	0.89	-0.6
1,836,068	-		BBR_RS18030	0.89	+2.0
1,836,068	-		BBR_RS18030	0.89	+0.5
1,836,068	-		BBR_RS18030	0.89	-0.6
1,836,068	-		BBR_RS18030	0.89	-0.3
1,836,079	+				+0.7
1,836,089	+				-0.1
1,836,097	-				+3.2
1,836,117	+				+0.2
1,836,117	+				-0.2
1,836,138	+				+0.8
1,836,160	+				+1.2
1,836,181	-				-0.2
1,836,200	+				+0.2
1,836,203	-				+3.2
1,836,208	-				-0.0
1,836,225	-				+0.8
1,836,290	+				+0.5
1,836,290	-				-2.6
1,836,300	+				-0.2
1,836,300	-				-0.6
1,836,300	-				-0.1
1,836,310	+				-2.9
1,836,310	+				+0.2
1,836,318	-				+1.0
1,836,330	-				+0.3
1,836,393	-				+2.6
1,836,402	+				-0.3
1,836,415	+		BBR_RS18035	0.11	-1.9
1,836,432	-		BBR_RS18035	0.14	-3.4
1,836,437	+		BBR_RS18035	0.14	-1.6
1,836,440	-		BBR_RS18035	0.15	-2.8
1,837,008	-				+0.9
1,837,026	+				-0.1
1,837,026	+				+0.5
1,837,034	-				+0.2
1,837,036	+				-1.2
1,837,036	+				+0.3
1,837,041	+				+0.2
1,837,043	+				+3.3
1,837,044	-				-0.8
1,837,044	-				+0.5
1,837,044	-				+0.2
1,837,049	-				-0.6
1,837,051	-				+2.8
1,837,102	-				-0.1
1,837,126	-				-0.8
1,837,134	-				+0.5
1,837,134	-				+0.6
1,837,134	-				+1.8
1,837,139	-				-0.6
1,837,149	-				-0.8
1,837,149	-				+0.0
1,837,157	-				-0.4