Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15195

Experiment: cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
1,175,813	-		BBR_RS15185	0.43	+2.7
1,175,838	+		BBR_RS15185	0.45	+0.6
1,175,845	-		BBR_RS15185	0.46	-0.7
1,175,850	-		BBR_RS15185	0.46	+0.7
1,175,917	+		BBR_RS15185	0.52	+1.4
1,175,917	-		BBR_RS15185	0.52	-1.3
1,176,008	+		BBR_RS15185	0.60	-0.8
1,176,011	-		BBR_RS15185	0.60	+0.8
1,176,026	-		BBR_RS15185	0.61	+1.5
1,176,030	+		BBR_RS15185	0.62	+2.0
1,176,033	-		BBR_RS15185	0.62	-1.2
1,176,037	+		BBR_RS15185	0.62	-0.7
1,176,037	+		BBR_RS15185	0.62	+0.1
1,176,040	+		BBR_RS15185	0.62	+1.7
1,176,045	-		BBR_RS15185	0.63	+0.7
1,176,117	+		BBR_RS15185	0.69	+0.5
1,176,132	+		BBR_RS15185	0.70	-0.3
1,176,138	+		BBR_RS15185	0.71	+1.0
1,176,138	+		BBR_RS15185	0.71	+1.6
1,176,146	-		BBR_RS15185	0.72	-0.7
1,176,148	+		BBR_RS15185	0.72	-0.9
1,176,151	-		BBR_RS15185	0.72	+0.7
1,176,173	-		BBR_RS15185	0.74	-0.7
1,176,270	-		BBR_RS15185	0.82	+0.7
1,176,270	-		BBR_RS15185	0.82	+1.4
1,176,272	+		BBR_RS15185	0.82	+3.5
1,176,302	+		BBR_RS15185	0.85	+0.7
1,176,356	+		BBR_RS15185	0.90	+1.1
1,176,379	+				+0.8
1,176,387	-				+0.9
1,176,434	+				-0.3
1,176,462	-				+0.4
1,176,507	+				+0.4
1,176,516	+				+0.4
1,176,519	-				+3.6
1,176,563	+		BBR_RS15190	0.23	+1.0
1,176,564	+		BBR_RS15190	0.24	+3.4
1,176,572	-		BBR_RS15190	0.26	+1.6
1,176,583	+		BBR_RS15190	0.30	+1.4
1,176,583	-		BBR_RS15190	0.30	+1.1
1,176,584	-		BBR_RS15190	0.30	-0.3
1,176,585	+		BBR_RS15190	0.30	+2.1
1,176,634	+		BBR_RS15190	0.46	+0.3
1,176,698	+		BBR_RS15190	0.67	+0.3
1,176,734	+		BBR_RS15190	0.79	-1.2
1,176,740	+		BBR_RS15190	0.81	+0.4
1,176,794	+				+4.2
1,176,794	+				+0.3
1,176,836	-				+0.3
1,176,917	+				+3.8
1,176,940	+		BBR_RS15195	0.10	+0.6
1,176,940	+		BBR_RS15195	0.10	+1.3
1,176,947	+		BBR_RS15195	0.11	-0.3
1,176,995	-		BBR_RS15195	0.14	-0.3
1,177,066	+		BBR_RS15195	0.19	+1.2
1,177,100	+		BBR_RS15195	0.21	+0.1
1,177,102	+		BBR_RS15195	0.21	+3.2
1,177,108	-		BBR_RS15195	0.22	-0.2
1,177,110	-		BBR_RS15195	0.22	+0.8
1,177,110	-		BBR_RS15195	0.22	-1.6
1,177,139	+		BBR_RS15195	0.24	-0.0
1,177,199	+		BBR_RS15195	0.28	+1.2
1,177,219	-		BBR_RS15195	0.30	+1.6
1,177,291	-		BBR_RS15195	0.35	+2.8
1,177,297	+		BBR_RS15195	0.35	+0.8
1,177,297	+		BBR_RS15195	0.35	-1.9
1,177,305	-		BBR_RS15195	0.36	+2.7
1,177,305	-		BBR_RS15195	0.36	+0.8
1,177,305	-		BBR_RS15195	0.36	+0.9
1,177,341	-		BBR_RS15195	0.38	+0.1
1,177,349	+		BBR_RS15195	0.39	-0.2
1,177,389	-		BBR_RS15195	0.42	+0.1
1,177,391	+		BBR_RS15195	0.42	+0.8
1,177,399	-		BBR_RS15195	0.42	-0.1
1,177,399	-		BBR_RS15195	0.42	+1.0
1,177,412	-		BBR_RS15195	0.43	+1.4
1,177,414	+		BBR_RS15195	0.43	+1.2
1,177,421	+		BBR_RS15195	0.44	+3.9
1,177,422	-		BBR_RS15195	0.44	+1.2
1,177,422	-		BBR_RS15195	0.44	+1.1
1,177,471	-		BBR_RS15195	0.47	+0.6
1,177,483	+		BBR_RS15195	0.48	+0.8
1,177,488	+		BBR_RS15195	0.48	+1.7
1,177,491	-		BBR_RS15195	0.49	-1.0
1,177,496	-		BBR_RS15195	0.49	+0.8
1,177,499	+		BBR_RS15195	0.49	+0.4
1,177,499	+		BBR_RS15195	0.49	-0.4
1,177,517	-		BBR_RS15195	0.51	+0.3
1,177,530	+		BBR_RS15195	0.51	-0.3
1,177,535	+		BBR_RS15195	0.52	+0.5
1,177,535	+		BBR_RS15195	0.52	-0.3
1,177,540	-		BBR_RS15195	0.52	+0.7
1,177,558	+		BBR_RS15195	0.53	+0.3
1,177,572	+		BBR_RS15195	0.54	+3.9
1,177,574	-		BBR_RS15195	0.55	+1.6
1,177,580	-		BBR_RS15195	0.55	-0.8
1,177,613	+		BBR_RS15195	0.57	-1.8
1,177,639	-		BBR_RS15195	0.59	+0.6
1,177,689	+		BBR_RS15195	0.63	+0.3
1,177,773	-		BBR_RS15195	0.68	+0.4
1,177,791	-		BBR_RS15195	0.70	+1.0
1,177,816	+		BBR_RS15195	0.72	+3.9
1,177,822	+		BBR_RS15195	0.72	+1.9
1,177,835	+		BBR_RS15195	0.73	-0.7
1,177,838	-		BBR_RS15195	0.73	+1.6
1,177,840	+		BBR_RS15195	0.73	-0.6
1,177,848	-		BBR_RS15195	0.74	+0.3
1,177,880	-		BBR_RS15195	0.76	+1.0
1,177,890	-		BBR_RS15195	0.77	+3.8
1,177,942	+		BBR_RS15195	0.80	+0.0
1,177,963	+		BBR_RS15195	0.82	+0.6
1,177,994	+		BBR_RS15195	0.84	+0.5
1,178,073	+		BBR_RS15195	0.90	-0.2
1,178,073	-		BBR_RS15195	0.90	+0.3
1,178,083	+				+1.2
1,178,094	+				+1.9
1,178,128	+				-1.0
1,178,291	+				+1.3
1,178,369	+				+0.2
1,178,372	+				+0.2
1,178,493	+		BBR_RS15200	0.13	-0.2
1,178,520	-		BBR_RS15200	0.15	+1.2
1,178,522	+		BBR_RS15200	0.15	-0.0
1,178,525	-		BBR_RS15200	0.15	-0.3
1,178,526	-		BBR_RS15200	0.15	+0.2
1,178,530	-		BBR_RS15200	0.16	+0.7
1,178,540	-		BBR_RS15200	0.17	+3.2
1,178,622	+		BBR_RS15200	0.23	-0.4
1,178,679	-		BBR_RS15200	0.27	+0.4
1,178,684	-		BBR_RS15200	0.28	-0.7
1,178,701	-		BBR_RS15200	0.29	+1.0
1,178,764	-		BBR_RS15200	0.34	+0.1
1,178,784	+		BBR_RS15200	0.36	+0.0
1,178,810	-		BBR_RS15200	0.38	+1.4
1,178,815	-		BBR_RS15200	0.38	+3.4
1,178,815	-		BBR_RS15200	0.38	+2.9
1,178,820	-		BBR_RS15200	0.38	+1.0
1,178,833	+		BBR_RS15200	0.39	+2.8
1,178,841	-		BBR_RS15200	0.40	+0.9
1,178,897	+		BBR_RS15200	0.44	+2.1
1,178,965	+		BBR_RS15200	0.50	-0.2
1,179,007	-		BBR_RS15200	0.53	-0.1
1,179,019	+		BBR_RS15200	0.54	+0.2
1,179,027	-		BBR_RS15200	0.54	-1.5
1,179,040	+		BBR_RS15200	0.55	+0.3
1,179,055	+		BBR_RS15200	0.57	-0.5
1,179,055	+		BBR_RS15200	0.57	+0.2
1,179,114	-		BBR_RS15200	0.61	-0.1