Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13380

Experiment: cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13375 and BBR_RS13380 are separated by 116 nucleotidesBBR_RS13380 and BBR_RS13385 are separated by 304 nucleotides BBR_RS13375: BBR_RS13375 - phosphoribosylformylglycinamidine cyclo-ligase, at 773,807 to 774,844 _RS13375 BBR_RS13380: BBR_RS13380 - amidophosphoribosyltransferase, at 774,961 to 776,472 _RS13380 BBR_RS13385: BBR_RS13385 - type VI secretion protein ImpB, at 776,777 to 778,363 _RS13385 Position (kb) 774 775 776 777Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 773.966 kb on - strand, within BBR_RS13375at 774.101 kb on + strand, within BBR_RS13375at 774.122 kb on - strand, within BBR_RS13375at 774.124 kb on + strand, within BBR_RS13375at 774.137 kb on - strand, within BBR_RS13375at 774.137 kb on - strand, within BBR_RS13375at 774.164 kb on - strand, within BBR_RS13375at 774.166 kb on + strand, within BBR_RS13375at 774.232 kb on - strand, within BBR_RS13375at 774.256 kb on - strand, within BBR_RS13375at 774.284 kb on - strand, within BBR_RS13375at 774.284 kb on - strand, within BBR_RS13375at 774.435 kb on + strand, within BBR_RS13375at 774.453 kb on - strand, within BBR_RS13375at 774.491 kb on - strand, within BBR_RS13375at 774.558 kb on - strand, within BBR_RS13375at 774.679 kb on - strand, within BBR_RS13375at 774.884 kb on - strandat 774.935 kb on + strandat 774.968 kb on - strandat 774.983 kb on + strandat 774.991 kb on - strandat 774.991 kb on - strandat 774.991 kb on - strandat 774.991 kb on - strandat 774.991 kb on - strandat 774.991 kb on - strandat 774.991 kb on - strandat 774.993 kb on - strandat 775.010 kb on + strandat 775.018 kb on - strandat 775.018 kb on - strandat 775.018 kb on - strandat 775.018 kb on - strandat 775.033 kb on - strandat 775.035 kb on - strandat 775.043 kb on - strandat 775.053 kb on - strandat 775.053 kb on - strandat 775.053 kb on - strandat 775.053 kb on - strandat 775.061 kb on - strandat 775.143 kb on - strand, within BBR_RS13380at 775.248 kb on - strand, within BBR_RS13380at 775.326 kb on - strand, within BBR_RS13380at 775.424 kb on + strand, within BBR_RS13380at 775.426 kb on - strand, within BBR_RS13380at 775.431 kb on - strand, within BBR_RS13380at 775.564 kb on - strand, within BBR_RS13380at 775.575 kb on - strand, within BBR_RS13380at 775.599 kb on - strand, within BBR_RS13380at 775.682 kb on - strand, within BBR_RS13380at 775.717 kb on - strand, within BBR_RS13380at 775.717 kb on - strand, within BBR_RS13380at 775.750 kb on + strand, within BBR_RS13380at 775.759 kb on + strand, within BBR_RS13380at 775.814 kb on - strand, within BBR_RS13380at 775.827 kb on - strand, within BBR_RS13380at 775.832 kb on - strand, within BBR_RS13380at 775.837 kb on - strand, within BBR_RS13380at 775.854 kb on + strand, within BBR_RS13380at 775.877 kb on - strand, within BBR_RS13380at 775.889 kb on - strand, within BBR_RS13380at 775.905 kb on + strand, within BBR_RS13380at 775.941 kb on - strand, within BBR_RS13380at 775.944 kb on + strand, within BBR_RS13380at 775.949 kb on + strand, within BBR_RS13380at 775.971 kb on - strand, within BBR_RS13380at 775.982 kb on + strand, within BBR_RS13380at 775.982 kb on + strand, within BBR_RS13380at 775.984 kb on + strand, within BBR_RS13380at 775.985 kb on - strand, within BBR_RS13380at 775.990 kb on - strand, within BBR_RS13380at 775.992 kb on - strand, within BBR_RS13380at 775.994 kb on + strand, within BBR_RS13380at 775.994 kb on + strand, within BBR_RS13380at 776.015 kb on - strand, within BBR_RS13380at 776.065 kb on - strand, within BBR_RS13380at 776.077 kb on + strand, within BBR_RS13380at 776.117 kb on - strand, within BBR_RS13380at 776.119 kb on - strand, within BBR_RS13380at 776.189 kb on - strand, within BBR_RS13380at 776.246 kb on + strand, within BBR_RS13380at 776.254 kb on - strand, within BBR_RS13380at 776.276 kb on + strand, within BBR_RS13380at 776.287 kb on + strand, within BBR_RS13380at 776.352 kb on - strandat 776.365 kb on + strandat 776.419 kb on - strandat 776.497 kb on + strandat 776.620 kb on + strandat 776.656 kb on + strandat 776.781 kb on + strandat 776.820 kb on - strandat 776.827 kb on + strandat 776.836 kb on + strandat 776.837 kb on + strandat 776.844 kb on + strandat 776.846 kb on + strandat 776.868 kb on + strandat 776.868 kb on + strandat 776.868 kb on + strandat 776.876 kb on - strandat 776.903 kb on + strandat 776.903 kb on + strandat 776.950 kb on + strand, within BBR_RS13385at 776.956 kb on + strand, within BBR_RS13385at 776.976 kb on + strand, within BBR_RS13385at 776.986 kb on + strand, within BBR_RS13385at 777.041 kb on + strand, within BBR_RS13385at 777.049 kb on - strand, within BBR_RS13385at 777.064 kb on + strand, within BBR_RS13385at 777.064 kb on + strand, within BBR_RS13385at 777.064 kb on + strand, within BBR_RS13385at 777.064 kb on + strand, within BBR_RS13385at 777.064 kb on + strand, within BBR_RS13385at 777.072 kb on - strand, within BBR_RS13385at 777.072 kb on - strand, within BBR_RS13385at 777.081 kb on + strand, within BBR_RS13385at 777.083 kb on + strand, within BBR_RS13385at 777.083 kb on + strand, within BBR_RS13385at 777.163 kb on + strand, within BBR_RS13385at 777.173 kb on + strand, within BBR_RS13385at 777.173 kb on + strand, within BBR_RS13385at 777.181 kb on - strand, within BBR_RS13385at 777.181 kb on - strand, within BBR_RS13385at 777.251 kb on - strand, within BBR_RS13385at 777.253 kb on - strand, within BBR_RS13385at 777.379 kb on - strand, within BBR_RS13385at 777.410 kb on + strand, within BBR_RS13385at 777.414 kb on + strand, within BBR_RS13385at 777.422 kb on - strand, within BBR_RS13385at 777.457 kb on + strand, within BBR_RS13385at 777.465 kb on - strand, within BBR_RS13385at 777.465 kb on - strand, within BBR_RS13385at 777.465 kb on - strand, within BBR_RS13385

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Per-strain Table

Position Strand Gene LocusTag Fraction cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
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773,966 - BBR_RS13375 0.15 -2.8
774,101 + BBR_RS13375 0.28 +1.0
774,122 - BBR_RS13375 0.30 -1.1
774,124 + BBR_RS13375 0.31 -0.3
774,137 - BBR_RS13375 0.32 -2.9
774,137 - BBR_RS13375 0.32 -0.3
774,164 - BBR_RS13375 0.34 -2.1
774,166 + BBR_RS13375 0.35 -2.1
774,232 - BBR_RS13375 0.41 -2.1
774,256 - BBR_RS13375 0.43 -2.3
774,284 - BBR_RS13375 0.46 -2.2
774,284 - BBR_RS13375 0.46 -1.8
774,435 + BBR_RS13375 0.61 -2.3
774,453 - BBR_RS13375 0.62 -1.7
774,491 - BBR_RS13375 0.66 -1.6
774,558 - BBR_RS13375 0.72 -2.5
774,679 - BBR_RS13375 0.84 -1.8
774,884 - +0.0
774,935 + -0.2
774,968 - -0.8
774,983 + -1.6
774,991 - +0.3
774,991 - +0.1
774,991 - -1.4
774,991 - -0.7
774,991 - +1.3
774,991 - -1.1
774,991 - -1.4
774,993 - -0.1
775,010 + -3.0
775,018 - -2.0
775,018 - -1.9
775,018 - -3.4
775,018 - -1.7
775,033 - -1.1
775,035 - +0.1
775,043 - -0.2
775,053 - -1.8
775,053 - -1.8
775,053 - +0.8
775,053 - -0.2
775,061 - -2.0
775,143 - BBR_RS13380 0.12 -1.9
775,248 - BBR_RS13380 0.19 -2.7
775,326 - BBR_RS13380 0.24 -2.3
775,424 + BBR_RS13380 0.31 -1.0
775,426 - BBR_RS13380 0.31 -2.6
775,431 - BBR_RS13380 0.31 -2.0
775,564 - BBR_RS13380 0.40 -2.4
775,575 - BBR_RS13380 0.41 -2.7
775,599 - BBR_RS13380 0.42 -3.2
775,682 - BBR_RS13380 0.48 -3.5
775,717 - BBR_RS13380 0.50 -2.7
775,717 - BBR_RS13380 0.50 -2.9
775,750 + BBR_RS13380 0.52 -2.0
775,759 + BBR_RS13380 0.53 -1.2
775,814 - BBR_RS13380 0.56 -3.0
775,827 - BBR_RS13380 0.57 -2.6
775,832 - BBR_RS13380 0.58 -2.2
775,837 - BBR_RS13380 0.58 -2.2
775,854 + BBR_RS13380 0.59 -1.7
775,877 - BBR_RS13380 0.61 -2.2
775,889 - BBR_RS13380 0.61 -1.9
775,905 + BBR_RS13380 0.62 -3.1
775,941 - BBR_RS13380 0.65 -2.7
775,944 + BBR_RS13380 0.65 -2.4
775,949 + BBR_RS13380 0.65 -2.3
775,971 - BBR_RS13380 0.67 -3.1
775,982 + BBR_RS13380 0.68 -2.8
775,982 + BBR_RS13380 0.68 -2.3
775,984 + BBR_RS13380 0.68 -1.7
775,985 - BBR_RS13380 0.68 -1.7
775,990 - BBR_RS13380 0.68 -2.2
775,992 - BBR_RS13380 0.68 -2.2
775,994 + BBR_RS13380 0.68 -3.5
775,994 + BBR_RS13380 0.68 -3.1
776,015 - BBR_RS13380 0.70 -3.6
776,065 - BBR_RS13380 0.73 -3.1
776,077 + BBR_RS13380 0.74 -3.0
776,117 - BBR_RS13380 0.76 -2.9
776,119 - BBR_RS13380 0.77 -1.6
776,189 - BBR_RS13380 0.81 -2.8
776,246 + BBR_RS13380 0.85 -2.7
776,254 - BBR_RS13380 0.86 -1.9
776,276 + BBR_RS13380 0.87 -1.0
776,287 + BBR_RS13380 0.88 -2.1
776,352 - -1.3
776,365 + -3.8
776,419 - -1.6
776,497 + -1.7
776,620 + +0.4
776,656 + +1.3
776,781 + -0.2
776,820 - +3.6
776,827 + -0.5
776,836 + -0.0
776,837 + +1.3
776,844 + -0.0
776,846 + -0.7
776,868 + -2.0
776,868 + +1.6
776,868 + +0.5
776,876 - -0.6
776,903 + +3.3
776,903 + +3.0
776,950 + BBR_RS13385 0.11 -0.7
776,956 + BBR_RS13385 0.11 +3.0
776,976 + BBR_RS13385 0.13 +3.2
776,986 + BBR_RS13385 0.13 -0.9
777,041 + BBR_RS13385 0.17 +1.7
777,049 - BBR_RS13385 0.17 -0.5
777,064 + BBR_RS13385 0.18 -0.5
777,064 + BBR_RS13385 0.18 -1.0
777,064 + BBR_RS13385 0.18 -0.1
777,064 + BBR_RS13385 0.18 +0.6
777,064 + BBR_RS13385 0.18 -0.7
777,072 - BBR_RS13385 0.19 -1.3
777,072 - BBR_RS13385 0.19 +2.6
777,081 + BBR_RS13385 0.19 +0.8
777,083 + BBR_RS13385 0.19 +0.1
777,083 + BBR_RS13385 0.19 -1.5
777,163 + BBR_RS13385 0.24 +0.4
777,173 + BBR_RS13385 0.25 +0.0
777,173 + BBR_RS13385 0.25 -0.9
777,181 - BBR_RS13385 0.25 +0.6
777,181 - BBR_RS13385 0.25 -1.1
777,251 - BBR_RS13385 0.30 -1.2
777,253 - BBR_RS13385 0.30 -0.3
777,379 - BBR_RS13385 0.38 +0.1
777,410 + BBR_RS13385 0.40 +0.5
777,414 + BBR_RS13385 0.40 -0.2
777,422 - BBR_RS13385 0.41 +0.1
777,457 + BBR_RS13385 0.43 +1.0
777,465 - BBR_RS13385 0.43 -1.2
777,465 - BBR_RS13385 0.43 +0.9
777,465 - BBR_RS13385 0.43 -1.2

Or see this region's nucleotide sequence