Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13300

Experiment: cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13290 and BBR_RS13295 are separated by 66 nucleotidesBBR_RS13295 and BBR_RS13300 overlap by 17 nucleotidesBBR_RS13300 and BBR_RS13305 are separated by 8 nucleotidesBBR_RS13305 and BBR_RS13310 are separated by 46 nucleotides BBR_RS13290: BBR_RS13290 - Zn-dependent oxidoreductase, at 757,551 to 758,543 _RS13290 BBR_RS13295: BBR_RS13295 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 758,610 to 759,110 _RS13295 BBR_RS13300: BBR_RS13300 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 759,094 to 760,272 _RS13300 BBR_RS13305: BBR_RS13305 - transcriptional repressor, at 760,281 to 760,709 _RS13305 BBR_RS13310: BBR_RS13310 - hypothetical protein, at 760,756 to 761,466 _RS13310 Position (kb) 759 760 761Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 758.113 kb on + strand, within BBR_RS13290at 758.113 kb on + strand, within BBR_RS13290at 758.113 kb on + strand, within BBR_RS13290at 758.113 kb on + strand, within BBR_RS13290at 758.113 kb on + strand, within BBR_RS13290at 758.121 kb on - strand, within BBR_RS13290at 758.121 kb on - strand, within BBR_RS13290at 758.121 kb on - strand, within BBR_RS13290at 758.121 kb on - strand, within BBR_RS13290at 758.123 kb on - strand, within BBR_RS13290at 758.123 kb on - strand, within BBR_RS13290at 758.125 kb on + strand, within BBR_RS13290at 758.139 kb on - strand, within BBR_RS13290at 758.160 kb on + strand, within BBR_RS13290at 758.161 kb on - strand, within BBR_RS13290at 758.168 kb on - strand, within BBR_RS13290at 758.224 kb on - strand, within BBR_RS13290at 758.236 kb on - strand, within BBR_RS13290at 758.329 kb on + strand, within BBR_RS13290at 758.336 kb on + strand, within BBR_RS13290at 758.337 kb on - strand, within BBR_RS13290at 758.351 kb on + strand, within BBR_RS13290at 758.372 kb on + strand, within BBR_RS13290at 758.372 kb on + strand, within BBR_RS13290at 758.380 kb on - strand, within BBR_RS13290at 758.380 kb on - strand, within BBR_RS13290at 758.457 kb on + strandat 758.545 kb on - strandat 758.559 kb on + strandat 758.566 kb on + strandat 758.566 kb on + strandat 758.574 kb on - strandat 758.574 kb on - strandat 759.413 kb on + strand, within BBR_RS13300at 759.498 kb on - strand, within BBR_RS13300at 759.595 kb on - strand, within BBR_RS13300at 760.274 kb on - strandat 760.281 kb on - strandat 760.337 kb on + strand, within BBR_RS13305at 760.342 kb on + strand, within BBR_RS13305at 760.350 kb on - strand, within BBR_RS13305at 760.350 kb on - strand, within BBR_RS13305at 760.384 kb on - strand, within BBR_RS13305at 760.518 kb on + strand, within BBR_RS13305at 760.602 kb on + strand, within BBR_RS13305at 760.607 kb on + strand, within BBR_RS13305at 760.630 kb on + strand, within BBR_RS13305at 760.630 kb on + strand, within BBR_RS13305at 760.632 kb on + strand, within BBR_RS13305at 760.638 kb on - strand, within BBR_RS13305at 760.638 kb on - strand, within BBR_RS13305at 760.638 kb on - strand, within BBR_RS13305at 760.638 kb on - strand, within BBR_RS13305at 760.685 kb on - strandat 760.689 kb on + strandat 760.712 kb on - strandat 760.755 kb on + strandat 760.758 kb on + strandat 760.758 kb on + strandat 760.793 kb on + strandat 760.793 kb on + strandat 760.793 kb on + strandat 760.793 kb on + strandat 760.818 kb on + strandat 760.836 kb on + strand, within BBR_RS13310at 760.907 kb on + strand, within BBR_RS13310at 760.937 kb on + strand, within BBR_RS13310at 760.945 kb on - strand, within BBR_RS13310at 761.001 kb on - strand, within BBR_RS13310at 761.006 kb on - strand, within BBR_RS13310at 761.031 kb on + strand, within BBR_RS13310at 761.046 kb on + strand, within BBR_RS13310at 761.054 kb on - strand, within BBR_RS13310at 761.082 kb on + strand, within BBR_RS13310at 761.082 kb on + strand, within BBR_RS13310at 761.082 kb on + strand, within BBR_RS13310at 761.082 kb on + strand, within BBR_RS13310at 761.090 kb on - strand, within BBR_RS13310at 761.090 kb on - strand, within BBR_RS13310at 761.109 kb on - strand, within BBR_RS13310at 761.188 kb on + strand, within BBR_RS13310at 761.196 kb on + strand, within BBR_RS13310at 761.198 kb on - strand, within BBR_RS13310at 761.198 kb on - strand, within BBR_RS13310at 761.206 kb on + strand, within BBR_RS13310at 761.207 kb on - strand, within BBR_RS13310

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Per-strain Table

Position Strand Gene LocusTag Fraction cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
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758,113 + BBR_RS13290 0.57 -1.7
758,113 + BBR_RS13290 0.57 -0.6
758,113 + BBR_RS13290 0.57 -0.7
758,113 + BBR_RS13290 0.57 +3.4
758,113 + BBR_RS13290 0.57 -1.9
758,121 - BBR_RS13290 0.57 +0.7
758,121 - BBR_RS13290 0.57 +0.1
758,121 - BBR_RS13290 0.57 +0.2
758,121 - BBR_RS13290 0.57 +0.9
758,123 - BBR_RS13290 0.58 -1.8
758,123 - BBR_RS13290 0.58 +0.3
758,125 + BBR_RS13290 0.58 -1.3
758,139 - BBR_RS13290 0.59 -0.2
758,160 + BBR_RS13290 0.61 +0.9
758,161 - BBR_RS13290 0.61 +0.1
758,168 - BBR_RS13290 0.62 -1.3
758,224 - BBR_RS13290 0.68 +1.1
758,236 - BBR_RS13290 0.69 +1.2
758,329 + BBR_RS13290 0.78 -0.2
758,336 + BBR_RS13290 0.79 +0.2
758,337 - BBR_RS13290 0.79 -0.3
758,351 + BBR_RS13290 0.81 +1.1
758,372 + BBR_RS13290 0.83 +3.2
758,372 + BBR_RS13290 0.83 -2.5
758,380 - BBR_RS13290 0.83 +0.4
758,380 - BBR_RS13290 0.83 -3.0
758,457 + +1.0
758,545 - +0.3
758,559 + +0.0
758,566 + -0.1
758,566 + +0.4
758,574 - +0.1
758,574 - +0.8
759,413 + BBR_RS13300 0.27 -1.9
759,498 - BBR_RS13300 0.34 -0.3
759,595 - BBR_RS13300 0.42 +1.8
760,274 - -2.7
760,281 - -1.7
760,337 + BBR_RS13305 0.13 -1.0
760,342 + BBR_RS13305 0.14 +1.1
760,350 - BBR_RS13305 0.16 -1.1
760,350 - BBR_RS13305 0.16 -0.7
760,384 - BBR_RS13305 0.24 -2.6
760,518 + BBR_RS13305 0.55 -0.7
760,602 + BBR_RS13305 0.75 -1.2
760,607 + BBR_RS13305 0.76 -1.4
760,630 + BBR_RS13305 0.81 -0.3
760,630 + BBR_RS13305 0.81 -2.2
760,632 + BBR_RS13305 0.82 -1.1
760,638 - BBR_RS13305 0.83 -0.5
760,638 - BBR_RS13305 0.83 -0.5
760,638 - BBR_RS13305 0.83 -1.5
760,638 - BBR_RS13305 0.83 -2.6
760,685 - -0.0
760,689 + -0.2
760,712 - -0.3
760,755 + +0.4
760,758 + +0.5
760,758 + +0.5
760,793 + +3.1
760,793 + -0.3
760,793 + +3.3
760,793 + +0.3
760,818 + +0.0
760,836 + BBR_RS13310 0.11 +1.1
760,907 + BBR_RS13310 0.21 -0.6
760,937 + BBR_RS13310 0.25 +0.9
760,945 - BBR_RS13310 0.27 -2.4
761,001 - BBR_RS13310 0.34 +0.4
761,006 - BBR_RS13310 0.35 +0.4
761,031 + BBR_RS13310 0.39 +1.5
761,046 + BBR_RS13310 0.41 +0.5
761,054 - BBR_RS13310 0.42 +0.7
761,082 + BBR_RS13310 0.46 +1.1
761,082 + BBR_RS13310 0.46 -0.5
761,082 + BBR_RS13310 0.46 +1.9
761,082 + BBR_RS13310 0.46 +0.4
761,090 - BBR_RS13310 0.47 -1.6
761,090 - BBR_RS13310 0.47 -0.1
761,109 - BBR_RS13310 0.50 -0.1
761,188 + BBR_RS13310 0.61 -0.5
761,196 + BBR_RS13310 0.62 +0.8
761,198 - BBR_RS13310 0.62 -0.4
761,198 - BBR_RS13310 0.62 +0.7
761,206 + BBR_RS13310 0.63 -0.8
761,207 - BBR_RS13310 0.63 +0.4

Or see this region's nucleotide sequence