Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16915

Experiment: cage3; mouse3; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS16910 and BBR_RS16915 are separated by 102 nucleotidesBBR_RS16915 and BBR_RS16920 are separated by 16 nucleotides BBR_RS16910: BBR_RS16910 - UDP-N-acetylmuramate--L-alanine ligase, at 1,564,990 to 1,566,528 _RS16910 BBR_RS16915: BBR_RS16915 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, at 1,566,631 to 1,567,803 _RS16915 BBR_RS16920: BBR_RS16920 - putative lipid II flippase FtsW, at 1,567,820 to 1,569,037 _RS16920 Position (kb) 1566 1567 1568Strain fitness (log2 ratio) -2 -1 0 1 2at 1566.507 kb on - strandat 1566.567 kb on + strandat 1566.573 kb on - strandat 1566.575 kb on - strandat 1566.601 kb on - strandat 1567.817 kb on + strandat 1567.821 kb on - strandat 1567.825 kb on - strandat 1567.828 kb on - strandat 1567.867 kb on - strandat 1567.877 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction cage3; mouse3; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
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1,566,507 - -2.2
1,566,567 + -1.8
1,566,573 - +1.9
1,566,575 - +0.6
1,566,601 - -2.1
1,567,817 + +0.9
1,567,821 - -0.7
1,567,825 - +1.9
1,567,828 - +1.8
1,567,867 - +1.2
1,567,877 - -2.1

Or see this region's nucleotide sequence