Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15055

Experiment: cage3; mouse3; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS15045 and BBR_RS15050 are separated by 82 nucleotidesBBR_RS15050 and BBR_RS15055 overlap by 1 nucleotidesBBR_RS15055 and BBR_RS15060 are separated by 95 nucleotides BBR_RS15045: BBR_RS15045 - histidine phosphatase family protein, at 1,144,866 to 1,145,540 _RS15045 BBR_RS15050: BBR_RS15050 - DUF948 domain-containing protein, at 1,145,623 to 1,146,027 _RS15050 BBR_RS15055: BBR_RS15055 - hypothetical protein, at 1,146,027 to 1,146,263 _RS15055 BBR_RS15060: BBR_RS15060 - alanine--tRNA ligase, at 1,146,359 to 1,149,037 _RS15060 Position (kb) 1146 1147Strain fitness (log2 ratio) -2 -1 0 1 2at 1145.115 kb on + strand, within BBR_RS15045at 1145.155 kb on + strand, within BBR_RS15045at 1145.155 kb on - strand, within BBR_RS15045at 1145.171 kb on + strand, within BBR_RS15045at 1145.171 kb on + strand, within BBR_RS15045at 1145.171 kb on + strand, within BBR_RS15045at 1145.171 kb on + strand, within BBR_RS15045at 1145.192 kb on - strand, within BBR_RS15045at 1145.200 kb on + strand, within BBR_RS15045at 1145.207 kb on + strand, within BBR_RS15045at 1145.336 kb on - strand, within BBR_RS15045at 1145.365 kb on + strand, within BBR_RS15045at 1145.407 kb on + strand, within BBR_RS15045at 1145.434 kb on + strand, within BBR_RS15045at 1145.434 kb on + strand, within BBR_RS15045at 1145.434 kb on + strand, within BBR_RS15045at 1145.434 kb on + strand, within BBR_RS15045at 1145.434 kb on + strand, within BBR_RS15045at 1145.442 kb on - strand, within BBR_RS15045at 1145.457 kb on + strand, within BBR_RS15045at 1145.464 kb on - strand, within BBR_RS15045at 1145.481 kb on - strandat 1145.483 kb on - strandat 1145.483 kb on - strandat 1145.492 kb on + strandat 1145.548 kb on - strandat 1145.567 kb on + strandat 1145.585 kb on + strandat 1145.588 kb on - strandat 1145.588 kb on - strandat 1145.588 kb on - strandat 1145.599 kb on + strandat 1145.750 kb on + strand, within BBR_RS15050at 1145.771 kb on + strand, within BBR_RS15050at 1145.938 kb on + strand, within BBR_RS15050at 1145.953 kb on + strand, within BBR_RS15050at 1146.038 kb on + strandat 1146.052 kb on + strand, within BBR_RS15055at 1146.085 kb on + strand, within BBR_RS15055at 1146.090 kb on + strand, within BBR_RS15055at 1146.183 kb on + strand, within BBR_RS15055at 1146.218 kb on + strand, within BBR_RS15055at 1146.239 kb on + strand, within BBR_RS15055at 1146.274 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction cage3; mouse3; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
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1,145,115 + BBR_RS15045 0.37 -0.4
1,145,155 + BBR_RS15045 0.43 -1.8
1,145,155 - BBR_RS15045 0.43 +1.9
1,145,171 + BBR_RS15045 0.45 +1.4
1,145,171 + BBR_RS15045 0.45 +1.6
1,145,171 + BBR_RS15045 0.45 +0.5
1,145,171 + BBR_RS15045 0.45 +0.7
1,145,192 - BBR_RS15045 0.48 -2.4
1,145,200 + BBR_RS15045 0.49 +0.9
1,145,207 + BBR_RS15045 0.51 +0.8
1,145,336 - BBR_RS15045 0.70 -1.3
1,145,365 + BBR_RS15045 0.74 +0.0
1,145,407 + BBR_RS15045 0.80 -0.0
1,145,434 + BBR_RS15045 0.84 +0.4
1,145,434 + BBR_RS15045 0.84 -2.5
1,145,434 + BBR_RS15045 0.84 -1.0
1,145,434 + BBR_RS15045 0.84 +1.5
1,145,434 + BBR_RS15045 0.84 -0.6
1,145,442 - BBR_RS15045 0.85 +0.4
1,145,457 + BBR_RS15045 0.88 +1.2
1,145,464 - BBR_RS15045 0.89 -0.8
1,145,481 - -1.5
1,145,483 - +0.9
1,145,483 - +1.6
1,145,492 + +0.6
1,145,548 - +0.7
1,145,567 + -0.7
1,145,585 + +0.2
1,145,588 - -0.2
1,145,588 - +0.7
1,145,588 - +1.1
1,145,599 + +2.5
1,145,750 + BBR_RS15050 0.31 -0.9
1,145,771 + BBR_RS15050 0.37 +0.3
1,145,938 + BBR_RS15050 0.78 -1.0
1,145,953 + BBR_RS15050 0.81 -0.5
1,146,038 + -2.2
1,146,052 + BBR_RS15055 0.11 -1.1
1,146,085 + BBR_RS15055 0.24 -0.7
1,146,090 + BBR_RS15055 0.27 +2.2
1,146,183 + BBR_RS15055 0.66 -2.0
1,146,218 + BBR_RS15055 0.81 -0.5
1,146,239 + BBR_RS15055 0.89 -1.4
1,146,274 + -2.2

Or see this region's nucleotide sequence