Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20275

Experiment: cage3; mouse2; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage3; mouse2; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
2,360,622	+				-1.5
2,360,622	+				+1.2
2,360,622	+				-0.2
2,360,622	+				+0.7
2,360,622	+				+0.8
2,360,630	-				+0.1
2,360,640	+				-0.7
2,360,652	+				+0.1
2,360,687	+				-0.6
2,360,687	+				+0.3
2,360,694	+				+0.0
2,360,707	+				-1.5
2,360,719	+				-0.4
2,360,719	+				-1.4
2,360,719	+				-0.1
2,360,719	+				-0.8
2,360,719	+				+1.1
2,360,727	-				+1.2
2,360,729	-				-0.9
2,360,729	-				-1.4
2,360,729	-				-0.0
2,360,731	+				-2.1
2,360,749	+				-0.3
2,360,749	+				+1.0
2,360,756	-				-2.1
2,360,757	-				-0.0
2,360,757	-				-0.1
2,360,757	-				-1.4
2,360,763	-				-0.4
2,360,792	+		BBR_RS20275	0.10	-0.9
2,360,802	-		BBR_RS20275	0.11	+0.8
2,360,813	-		BBR_RS20275	0.13	-0.3
2,360,827	+		BBR_RS20275	0.14	-1.7
2,360,834	-		BBR_RS20275	0.15	+1.2
2,360,839	-		BBR_RS20275	0.16	-0.7
2,360,841	-		BBR_RS20275	0.16	-0.5
2,360,843	+		BBR_RS20275	0.16	-0.3
2,360,848	+		BBR_RS20275	0.17	-1.8
2,360,848	+		BBR_RS20275	0.17	-0.3
2,360,848	+		BBR_RS20275	0.17	-2.2
2,360,849	-		BBR_RS20275	0.17	+2.1
2,360,851	+		BBR_RS20275	0.17	-0.8
2,360,856	-		BBR_RS20275	0.18	+1.7
2,360,856	-		BBR_RS20275	0.18	-0.1
2,360,857	+		BBR_RS20275	0.18	-1.4
2,360,858	+		BBR_RS20275	0.18	+1.4
2,360,858	+		BBR_RS20275	0.18	-0.2
2,360,863	+		BBR_RS20275	0.18	-2.2
2,360,864	-		BBR_RS20275	0.18	+0.4
2,360,866	-		BBR_RS20275	0.19	-3.2
2,360,866	-		BBR_RS20275	0.19	+0.6
2,360,866	-		BBR_RS20275	0.19	+0.8
2,360,866	-		BBR_RS20275	0.19	+0.6
2,360,880	+		BBR_RS20275	0.20	+1.0
2,360,880	+		BBR_RS20275	0.20	-0.6
2,360,888	-		BBR_RS20275	0.21	+0.4
2,360,888	-		BBR_RS20275	0.21	-0.4
2,360,888	-		BBR_RS20275	0.21	-0.3
2,360,896	+		BBR_RS20275	0.22	+0.3
2,360,909	+		BBR_RS20275	0.24	+1.9
2,360,935	-		BBR_RS20275	0.27	+0.2
2,360,935	-		BBR_RS20275	0.27	-0.3
2,360,950	+		BBR_RS20275	0.28	-1.8
2,360,951	+		BBR_RS20275	0.29	+0.8
2,360,955	-		BBR_RS20275	0.29	-0.6
2,360,956	-		BBR_RS20275	0.29	-0.2
2,360,958	+		BBR_RS20275	0.29	+0.7
2,360,962	+		BBR_RS20275	0.30	-0.1
2,360,962	+		BBR_RS20275	0.30	+1.2
2,360,986	-		BBR_RS20275	0.33	-1.2
2,360,993	-		BBR_RS20275	0.33	-0.3
2,360,997	+		BBR_RS20275	0.34	-1.0
2,360,997	-		BBR_RS20275	0.34	+0.7
2,361,007	+		BBR_RS20275	0.35	-0.0
2,361,020	+		BBR_RS20275	0.37	-0.8
2,361,020	+		BBR_RS20275	0.37	+0.4
2,361,027	+		BBR_RS20275	0.37	-1.1
2,361,028	-		BBR_RS20275	0.38	-1.0
2,361,029	+		BBR_RS20275	0.38	-0.7
2,361,029	+		BBR_RS20275	0.38	-1.8
2,361,029	+		BBR_RS20275	0.38	+0.7
2,361,029	+		BBR_RS20275	0.38	-1.0
2,361,029	+		BBR_RS20275	0.38	-1.8
2,361,029	+		BBR_RS20275	0.38	+0.4
2,361,029	+		BBR_RS20275	0.38	+0.4
2,361,037	-		BBR_RS20275	0.39	-0.1
2,361,037	-		BBR_RS20275	0.39	-0.0
2,361,043	+		BBR_RS20275	0.39	+0.1
2,361,051	-		BBR_RS20275	0.40	-1.4
2,361,056	-		BBR_RS20275	0.41	-0.5
2,361,056	-		BBR_RS20275	0.41	-0.0
2,361,059	-		BBR_RS20275	0.41	-0.0
2,361,065	+		BBR_RS20275	0.42	+0.5
2,361,082	+		BBR_RS20275	0.44	-0.8
2,361,090	+		BBR_RS20275	0.45	-1.1
2,361,090	+		BBR_RS20275	0.45	+0.8
2,361,092	+		BBR_RS20275	0.45	+0.6
2,361,098	-		BBR_RS20275	0.46	+0.3
2,361,098	-		BBR_RS20275	0.46	+1.9
2,361,100	-		BBR_RS20275	0.46	+0.1
2,361,114	-		BBR_RS20275	0.48	-0.6
2,361,119	-		BBR_RS20275	0.48	-0.8
2,361,121	+		BBR_RS20275	0.48	-0.0
2,361,121	-		BBR_RS20275	0.48	-2.2
2,361,124	-		BBR_RS20275	0.49	+0.0
2,361,126	+		BBR_RS20275	0.49	-1.1
2,361,126	+		BBR_RS20275	0.49	+1.6
2,361,127	+		BBR_RS20275	0.49	-0.0
2,361,132	+		BBR_RS20275	0.50	-0.1
2,361,132	+		BBR_RS20275	0.50	+0.8
2,361,132	+		BBR_RS20275	0.50	+0.3
2,361,134	+		BBR_RS20275	0.50	+1.3
2,361,134	-		BBR_RS20275	0.50	+1.1
2,361,140	-		BBR_RS20275	0.51	-1.6
2,361,140	-		BBR_RS20275	0.51	+0.1
2,361,140	-		BBR_RS20275	0.51	+0.1
2,361,140	-		BBR_RS20275	0.51	+0.5
2,361,140	-		BBR_RS20275	0.51	-0.1
2,361,140	-		BBR_RS20275	0.51	+0.2
2,361,140	-		BBR_RS20275	0.51	+0.1
2,361,140	-		BBR_RS20275	0.51	+0.5
2,361,142	+		BBR_RS20275	0.51	-2.3
2,361,142	+		BBR_RS20275	0.51	-0.4
2,361,142	+		BBR_RS20275	0.51	+0.3
2,361,142	+		BBR_RS20275	0.51	-0.1
2,361,142	+		BBR_RS20275	0.51	+0.7
2,361,142	+		BBR_RS20275	0.51	+0.9
2,361,142	+		BBR_RS20275	0.51	+0.0
2,361,142	+		BBR_RS20275	0.51	-0.0
2,361,148	+		BBR_RS20275	0.51	+0.4
2,361,150	-		BBR_RS20275	0.52	+0.4
2,361,150	-		BBR_RS20275	0.52	-0.0
2,361,150	-		BBR_RS20275	0.52	-0.0
2,361,150	-		BBR_RS20275	0.52	-0.7
2,361,150	-		BBR_RS20275	0.52	-1.1
2,361,150	-		BBR_RS20275	0.52	-0.0
2,361,150	-		BBR_RS20275	0.52	-1.2
2,361,150	-		BBR_RS20275	0.52	-2.0
2,361,150	-		BBR_RS20275	0.52	-0.3
2,361,150	-		BBR_RS20275	0.52	-0.9
2,361,150	-		BBR_RS20275	0.52	+1.3
2,361,150	-		BBR_RS20275	0.52	-0.1
2,361,150	-		BBR_RS20275	0.52	-1.1
2,361,150	-		BBR_RS20275	0.52	-0.1
2,361,154	+		BBR_RS20275	0.52	-0.5
2,361,154	+		BBR_RS20275	0.52	+0.2
2,361,160	+		BBR_RS20275	0.53	+1.3
2,361,161	+		BBR_RS20275	0.53	-0.5
2,361,161	+		BBR_RS20275	0.53	+1.1
2,361,161	+		BBR_RS20275	0.53	-0.7
2,361,161	+		BBR_RS20275	0.53	-0.9
2,361,162	-		BBR_RS20275	0.53	+0.5
2,361,162	-		BBR_RS20275	0.53	+0.7
2,361,169	-		BBR_RS20275	0.54	+2.8
2,361,169	-		BBR_RS20275	0.54	-0.3
2,361,169	-		BBR_RS20275	0.54	-0.4
2,361,219	+		BBR_RS20275	0.60	-0.5
2,361,219	+		BBR_RS20275	0.60	+0.8
2,361,219	+		BBR_RS20275	0.60	+1.2
2,361,219	+		BBR_RS20275	0.60	-1.1
2,361,219	+		BBR_RS20275	0.60	+0.9
2,361,221	-		BBR_RS20275	0.60	+0.1
2,361,222	-		BBR_RS20275	0.60	-1.8
2,361,227	-		BBR_RS20275	0.61	-0.4
2,361,227	-		BBR_RS20275	0.61	-1.5
2,361,229	+		BBR_RS20275	0.61	+0.1
2,361,234	+		BBR_RS20275	0.61	+0.3
2,361,249	+		BBR_RS20275	0.63	+1.0
2,361,249	+		BBR_RS20275	0.63	+1.5
2,361,257	-		BBR_RS20275	0.64	+0.3
2,361,257	-		BBR_RS20275	0.64	-0.4
2,361,260	+		BBR_RS20275	0.64	-0.8
2,361,300	+		BBR_RS20275	0.69	+0.1
2,361,310	+		BBR_RS20275	0.70	-0.2
2,361,310	+		BBR_RS20275	0.70	-0.4
2,361,310	-		BBR_RS20275	0.70	+0.1
2,361,313	-		BBR_RS20275	0.71	+0.6
2,361,313	-		BBR_RS20275	0.71	-2.0
2,361,315	+		BBR_RS20275	0.71	-0.0
2,361,326	+		BBR_RS20275	0.72	+0.4
2,361,349	+		BBR_RS20275	0.75	+0.0
2,361,349	+		BBR_RS20275	0.75	-0.3
2,361,349	+		BBR_RS20275	0.75	+0.8
2,361,349	+		BBR_RS20275	0.75	-1.6
2,361,349	+		BBR_RS20275	0.75	-0.4
2,361,349	+		BBR_RS20275	0.75	-2.7
2,361,349	+		BBR_RS20275	0.75	-0.6
2,361,357	-		BBR_RS20275	0.76	+0.6
2,361,357	-		BBR_RS20275	0.76	-1.5
2,361,364	-		BBR_RS20275	0.77	+0.5
2,361,392	+		BBR_RS20275	0.80	-3.4
2,361,402	+		BBR_RS20275	0.81	-1.9
2,361,415	-		BBR_RS20275	0.82	-0.9
2,361,419	+		BBR_RS20275	0.83	+0.8
2,361,426	+		BBR_RS20275	0.84	+0.2
2,361,441	-		BBR_RS20275	0.85	+1.2
2,361,447	+		BBR_RS20275	0.86	-1.6
2,361,452	+		BBR_RS20275	0.87	+0.3
2,361,452	+		BBR_RS20275	0.87	+1.6
2,361,452	+		BBR_RS20275	0.87	-1.4
2,361,452	-		BBR_RS20275	0.87	+0.3
2,361,454	+		BBR_RS20275	0.87	-2.0
2,361,459	+		BBR_RS20275	0.88	+2.9
2,361,459	+		BBR_RS20275	0.88	-0.2
2,361,459	+		BBR_RS20275	0.88	-1.3
2,361,459	+		BBR_RS20275	0.88	-1.0
2,361,460	-		BBR_RS20275	0.88	+0.3
2,361,460	-		BBR_RS20275	0.88	+0.5
2,361,460	-		BBR_RS20275	0.88	+1.1
2,361,460	-		BBR_RS20275	0.88	-0.9
2,361,460	-		BBR_RS20275	0.88	+0.6
2,361,469	+		BBR_RS20275	0.89	-0.7
2,361,477	-		BBR_RS20275	0.90	+0.2
2,361,485	+				+1.6
2,361,501	-				-3.1
2,361,526	-				-0.5
2,361,541	-				-0.6
2,361,569	-				-0.7
2,361,608	+				-1.0
2,361,608	+				-0.3
2,361,608	+				+1.4
2,361,608	+				+0.4
2,361,608	-				-0.8
2,361,613	+				+0.3
2,361,613	+				+0.8
2,361,615	+				+0.8
2,361,616	-				-1.5
2,361,616	-				+0.6
2,361,616	-				-1.4
2,361,616	-				-1.0
2,361,616	-				+0.3
2,361,616	-				-1.7
2,361,618	+				-1.0
2,361,623	+				+1.2
2,361,623	-				+0.4
2,361,630	-				-1.6
2,361,630	-				-0.2
2,361,636	-				-0.2
2,361,659	+				+0.7
2,361,664	+				+0.4
2,361,665	-				+1.5
2,361,672	+				-1.5
2,361,672	+				-1.1
2,361,672	+				+1.0
2,361,672	+				-1.7
2,361,680	-				-1.3
2,361,687	+				+0.0
2,361,692	+				-1.7
2,361,692	+				+0.7
2,361,697	+				-0.7
2,361,716	+				-0.6
2,361,722	+				-2.6
2,361,767	-				-0.9
2,361,772	+		BBR_RS20280	0.10	-2.4
2,361,772	+		BBR_RS20280	0.10	+1.6
2,361,772	-		BBR_RS20280	0.10	-1.9
2,361,774	+		BBR_RS20280	0.10	-2.9
2,361,789	+		BBR_RS20280	0.11	+0.3
2,361,792	-		BBR_RS20280	0.11	-0.6
2,361,806	+		BBR_RS20280	0.12	-1.1
2,361,822	+		BBR_RS20280	0.13	+0.1
2,361,827	+		BBR_RS20280	0.14	+0.8
2,361,827	+		BBR_RS20280	0.14	+1.1
2,361,827	+		BBR_RS20280	0.14	-1.3
2,361,829	-		BBR_RS20280	0.14	-1.8
2,361,830	-		BBR_RS20280	0.14	-1.1
2,361,835	-		BBR_RS20280	0.14	+0.4
2,361,846	-		BBR_RS20280	0.15	-1.7
2,361,846	-		BBR_RS20280	0.15	+1.6
2,361,849	+		BBR_RS20280	0.15	-0.8
2,361,857	-		BBR_RS20280	0.16	-1.4
2,361,858	-		BBR_RS20280	0.16	+0.5
2,361,859	+		BBR_RS20280	0.16	-1.6
2,361,879	+		BBR_RS20280	0.17	+0.4
2,361,887	-		BBR_RS20280	0.18	-2.4
2,361,893	+		BBR_RS20280	0.18	+0.9
2,361,901	-		BBR_RS20280	0.19	-0.4
2,361,901	-		BBR_RS20280	0.19	+0.2
2,361,901	-		BBR_RS20280	0.19	-1.6
2,361,914	-		BBR_RS20280	0.19	-0.6
2,361,916	+		BBR_RS20280	0.20	+0.1
2,361,916	+		BBR_RS20280	0.20	+0.2
2,361,916	+		BBR_RS20280	0.20	-1.1
2,361,916	+		BBR_RS20280	0.20	-0.3
2,361,919	+		BBR_RS20280	0.20	+0.3
2,361,924	-		BBR_RS20280	0.20	-0.2
2,361,924	-		BBR_RS20280	0.20	-0.7
2,361,944	+		BBR_RS20280	0.21	+0.1
2,361,947	+		BBR_RS20280	0.22	-3.2
2,361,965	-		BBR_RS20280	0.23	-1.1
2,361,967	-		BBR_RS20280	0.23	-1.6
2,361,967	-		BBR_RS20280	0.23	+1.3
2,361,969	+		BBR_RS20280	0.23	+0.6
2,361,969	+		BBR_RS20280	0.23	-0.8
2,361,970	-		BBR_RS20280	0.23	+0.2
2,361,970	-		BBR_RS20280	0.23	+0.2
2,361,977	-		BBR_RS20280	0.24	-0.4
2,361,977	-		BBR_RS20280	0.24	-1.4
2,361,977	-		BBR_RS20280	0.24	-0.8
2,361,977	-		BBR_RS20280	0.24	+0.2
2,361,977	-		BBR_RS20280	0.24	+0.5
2,361,977	-		BBR_RS20280	0.24	-2.2
2,361,977	-		BBR_RS20280	0.24	-2.0
2,361,994	-		BBR_RS20280	0.25	+0.4
2,361,999	-		BBR_RS20280	0.25	+0.7
2,362,023	+		BBR_RS20280	0.27	+1.1
2,362,069	-		BBR_RS20280	0.30	-1.1
2,362,081	+		BBR_RS20280	0.30	+0.2
2,362,099	+		BBR_RS20280	0.32	-1.6
2,362,102	+		BBR_RS20280	0.32	+1.9
2,362,104	+		BBR_RS20280	0.32	+0.6
2,362,112	-		BBR_RS20280	0.33	-0.5
2,362,119	-		BBR_RS20280	0.33	-2.6
2,362,126	-		BBR_RS20280	0.33	+0.9
2,362,140	-		BBR_RS20280	0.34	+1.6
2,362,160	+		BBR_RS20280	0.36	-1.6
2,362,160	+		BBR_RS20280	0.36	-0.7
2,362,180	+		BBR_RS20280	0.37	+0.2
2,362,180	+		BBR_RS20280	0.37	+1.1
2,362,183	+		BBR_RS20280	0.37	+2.3
2,362,219	-		BBR_RS20280	0.40	+0.3
2,362,219	-		BBR_RS20280	0.40	-1.0
2,362,219	-		BBR_RS20280	0.40	+0.6
2,362,230	+		BBR_RS20280	0.40	-1.9
2,362,233	-		BBR_RS20280	0.41	-2.0
2,362,233	-		BBR_RS20280	0.41	-0.9
2,362,238	-		BBR_RS20280	0.41	-1.8
2,362,271	+		BBR_RS20280	0.43	-0.2
2,362,271	+		BBR_RS20280	0.43	+0.1
2,362,277	+		BBR_RS20280	0.43	+0.2
2,362,279	-		BBR_RS20280	0.44	-1.9
2,362,285	-		BBR_RS20280	0.44	-1.8
2,362,285	-		BBR_RS20280	0.44	-1.3
2,362,286	-		BBR_RS20280	0.44	-3.1
2,362,298	-		BBR_RS20280	0.45	-1.9
2,362,298	-		BBR_RS20280	0.45	+2.3
2,362,298	-		BBR_RS20280	0.45	-0.2
2,362,304	+		BBR_RS20280	0.45	-0.5
2,362,316	-		BBR_RS20280	0.46	-0.8
2,362,355	+		BBR_RS20280	0.49	-0.4
2,362,355	-		BBR_RS20280	0.49	-0.4
2,362,357	+		BBR_RS20280	0.49	-1.6
2,362,363	-		BBR_RS20280	0.49	-1.7
2,362,364	-		BBR_RS20280	0.49	-3.0
2,362,388	+		BBR_RS20280	0.51	+1.1
2,362,400	+		BBR_RS20280	0.52	-1.1
2,362,408	-		BBR_RS20280	0.52	-2.1
2,362,408	-		BBR_RS20280	0.52	+1.0
2,362,415	-		BBR_RS20280	0.53	-0.2
2,362,421	+		BBR_RS20280	0.53	+1.0
2,362,421	+		BBR_RS20280	0.53	-0.5
2,362,423	+		BBR_RS20280	0.53	-1.2
2,362,423	+		BBR_RS20280	0.53	-3.0
2,362,423	-		BBR_RS20280	0.53	-1.2
2,362,428	+		BBR_RS20280	0.53	+1.3
2,362,428	+		BBR_RS20280	0.53	-2.0
2,362,428	+		BBR_RS20280	0.53	+0.8
2,362,428	+		BBR_RS20280	0.53	-0.7
2,362,429	-		BBR_RS20280	0.54	+0.5
2,362,429	-		BBR_RS20280	0.54	+0.3
2,362,429	-		BBR_RS20280	0.54	+0.7
2,362,431	-		BBR_RS20280	0.54	-0.8
2,362,431	-		BBR_RS20280	0.54	-0.1
2,362,431	-		BBR_RS20280	0.54	-1.3
2,362,436	-		BBR_RS20280	0.54	+0.7
2,362,436	-		BBR_RS20280	0.54	+1.4
2,362,440	+		BBR_RS20280	0.54	-2.4
2,362,448	-		BBR_RS20280	0.55	-1.0
2,362,453	+		BBR_RS20280	0.55	+1.7
2,362,461	-		BBR_RS20280	0.56	+0.2
2,362,462	+		BBR_RS20280	0.56	-0.9
2,362,470	-		BBR_RS20280	0.56	-1.1
2,362,470	-		BBR_RS20280	0.56	-0.2
2,362,472	+		BBR_RS20280	0.56	-1.0
2,362,472	+		BBR_RS20280	0.56	-0.4
2,362,479	+		BBR_RS20280	0.57	-0.9
2,362,480	-		BBR_RS20280	0.57	-0.0
2,362,493	+		BBR_RS20280	0.58	-1.9
2,362,497	-		BBR_RS20280	0.58	+0.4
2,362,517	+		BBR_RS20280	0.59	+0.7
2,362,517	+		BBR_RS20280	0.59	-0.3
2,362,517	+		BBR_RS20280	0.59	+0.3
2,362,517	+		BBR_RS20280	0.59	+0.7
2,362,524	+		BBR_RS20280	0.60	-0.3
2,362,525	-		BBR_RS20280	0.60	+0.1
2,362,525	-		BBR_RS20280	0.60	+0.1
2,362,525	-		BBR_RS20280	0.60	-1.6
2,362,525	-		BBR_RS20280	0.60	-2.2
2,362,532	-		BBR_RS20280	0.60	-1.9
2,362,532	-		BBR_RS20280	0.60	-0.8
2,362,532	-		BBR_RS20280	0.60	-2.2
2,362,534	+		BBR_RS20280	0.60	-0.8
2,362,534	+		BBR_RS20280	0.60	+1.5
2,362,534	+		BBR_RS20280	0.60	-0.4
2,362,542	-		BBR_RS20280	0.61	-0.1
2,362,542	-		BBR_RS20280	0.61	-0.9
2,362,542	-		BBR_RS20280	0.61	-0.6
2,362,542	-		BBR_RS20280	0.61	+1.2
2,362,552	+		BBR_RS20280	0.62	-1.5