Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19580

Experiment: cage3; mouse2; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage3; mouse2; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
2,177,209	+				-0.7
2,177,249	+				+0.3
2,177,256	+				-0.2
2,177,257	-				+0.9
2,177,264	-				+1.1
2,177,310	-				-1.4
2,177,316	-				+1.2
2,177,328	+				-1.2
2,177,336	-				+1.2
2,177,336	-				+0.6
2,177,336	-				-2.7
2,177,336	-				+1.0
2,177,338	-				+0.9
2,177,338	-				-0.7
2,177,338	-				-0.5
2,177,346	-				+1.4
2,177,346	-				-0.0
2,177,347	-				-0.6
2,177,351	-				+0.8
2,177,360	-				-1.2
2,177,360	-				+0.4
2,177,360	-				+0.3
2,177,416	-				-0.2
2,177,416	-				-0.1
2,177,416	-				+0.9
2,177,420	+				+0.2
2,177,421	-				-0.9
2,177,421	-				+1.7
2,177,424	+				-1.0
2,177,425	+				+0.6
2,177,432	+				-0.8
2,177,432	+				-0.3
2,177,438	-				+0.5
2,177,440	+				+2.1
2,177,445	+				+0.6
2,177,445	+				-2.5
2,177,448	-				-0.4
2,177,450	+				-0.4
2,177,453	-				+1.8
2,177,453	-				-0.3
2,177,480	-				-1.9
2,177,491	-				+0.3
2,177,499	-				+0.8
2,177,499	-				+1.5
2,177,499	-				-1.4
2,177,509	-				+1.3
2,177,515	-				+0.4
2,177,517	-				+0.6
2,177,526	+				+0.2
2,177,564	+				-0.1
2,177,568	+				+1.7
2,177,599	+				-0.7
2,177,603	-				+0.9
2,177,615	-				+0.2
2,177,617	-				-1.4
2,177,624	+				-1.5
2,177,630	+		BBR_RS19580	0.10	-0.0
2,177,630	+		BBR_RS19580	0.10	+1.0
2,177,630	+		BBR_RS19580	0.10	-0.9
2,177,634	+		BBR_RS19580	0.10	-1.8
2,177,659	-		BBR_RS19580	0.12	-0.8
2,177,661	+		BBR_RS19580	0.12	-1.7
2,177,662	+		BBR_RS19580	0.12	-0.2
2,177,689	+		BBR_RS19580	0.14	-1.5
2,177,689	+		BBR_RS19580	0.14	-0.0
2,177,689	+		BBR_RS19580	0.14	+1.2
2,177,689	+		BBR_RS19580	0.14	-1.9
2,177,689	+		BBR_RS19580	0.14	+0.0
2,177,695	+		BBR_RS19580	0.15	-1.7
2,177,697	-		BBR_RS19580	0.15	+0.2
2,177,703	-		BBR_RS19580	0.16	-1.4
2,177,704	+		BBR_RS19580	0.16	+1.0
2,177,704	+		BBR_RS19580	0.16	-1.3
2,177,713	+		BBR_RS19580	0.16	-1.2
2,177,718	+		BBR_RS19580	0.17	+0.7
2,177,718	+		BBR_RS19580	0.17	+0.4
2,177,721	-		BBR_RS19580	0.17	+0.7
2,177,721	-		BBR_RS19580	0.17	+1.3
2,177,728	+		BBR_RS19580	0.17	-0.6
2,177,728	+		BBR_RS19580	0.17	+0.6
2,177,736	-		BBR_RS19580	0.18	-0.1
2,177,736	-		BBR_RS19580	0.18	-0.1
2,177,738	+		BBR_RS19580	0.18	-1.3
2,177,738	+		BBR_RS19580	0.18	-0.4
2,177,740	-		BBR_RS19580	0.18	+0.6
2,177,746	-		BBR_RS19580	0.19	-0.6
2,177,751	+		BBR_RS19580	0.19	-0.9
2,177,751	+		BBR_RS19580	0.19	+0.1
2,177,758	+		BBR_RS19580	0.20	+1.5
2,177,758	+		BBR_RS19580	0.20	+1.0
2,177,759	-		BBR_RS19580	0.20	+2.3
2,177,759	-		BBR_RS19580	0.20	+2.1
2,177,761	+		BBR_RS19580	0.20	-0.3
2,177,765	+		BBR_RS19580	0.20	-0.3
2,177,765	+		BBR_RS19580	0.20	-0.5
2,177,766	-		BBR_RS19580	0.20	+0.4
2,177,782	-		BBR_RS19580	0.21	+0.1
2,177,798	-		BBR_RS19580	0.23	+1.3
2,177,808	-		BBR_RS19580	0.23	-2.0
2,177,808	-		BBR_RS19580	0.23	+1.2
2,177,808	-		BBR_RS19580	0.23	-1.0
2,177,809	-		BBR_RS19580	0.23	-0.7
2,177,809	-		BBR_RS19580	0.23	-1.2
2,177,809	-		BBR_RS19580	0.23	-0.8
2,177,830	-		BBR_RS19580	0.25	+1.5
2,177,835	-		BBR_RS19580	0.25	+0.6
2,177,835	-		BBR_RS19580	0.25	-0.9
2,177,835	-		BBR_RS19580	0.25	+0.5
2,177,849	+		BBR_RS19580	0.26	+1.1
2,177,874	+		BBR_RS19580	0.28	-0.6
2,177,882	+		BBR_RS19580	0.29	+0.8
2,177,884	+		BBR_RS19580	0.29	-1.3
2,177,887	+		BBR_RS19580	0.29	+0.9
2,177,887	+		BBR_RS19580	0.29	-1.8
2,177,890	-		BBR_RS19580	0.29	+1.0
2,177,890	-		BBR_RS19580	0.29	+0.3
2,177,901	+		BBR_RS19580	0.30	-0.3
2,177,908	+		BBR_RS19580	0.31	-0.8
2,177,916	-		BBR_RS19580	0.31	-1.4
2,177,936	-		BBR_RS19580	0.33	-1.3
2,177,942	-		BBR_RS19580	0.33	-1.2
2,177,942	-		BBR_RS19580	0.33	+0.2
2,177,951	-		BBR_RS19580	0.34	-0.2
2,177,958	+		BBR_RS19580	0.34	+0.1
2,177,966	+		BBR_RS19580	0.35	-1.2
2,177,966	+		BBR_RS19580	0.35	+0.1
2,177,966	+		BBR_RS19580	0.35	-1.6
2,177,966	-		BBR_RS19580	0.35	+0.4
2,177,971	+		BBR_RS19580	0.35	-1.8
2,177,971	+		BBR_RS19580	0.35	+1.5
2,177,971	+		BBR_RS19580	0.35	-1.9
2,177,976	+		BBR_RS19580	0.36	+2.4
2,177,979	-		BBR_RS19580	0.36	-1.1
2,177,979	-		BBR_RS19580	0.36	+0.7
2,177,983	-		BBR_RS19580	0.36	-1.4
2,177,989	-		BBR_RS19580	0.37	-0.3
2,177,990	+		BBR_RS19580	0.37	+0.1
2,177,995	+		BBR_RS19580	0.37	-0.8
2,177,998	-		BBR_RS19580	0.37	+0.1
2,177,998	-		BBR_RS19580	0.37	+1.6
2,177,998	-		BBR_RS19580	0.37	-0.6
2,178,000	+		BBR_RS19580	0.38	-0.3
2,178,003	-		BBR_RS19580	0.38	-2.0
2,178,006	-		BBR_RS19580	0.38	-2.3
2,178,006	-		BBR_RS19580	0.38	-1.7
2,178,008	-		BBR_RS19580	0.38	-0.4
2,178,008	-		BBR_RS19580	0.38	-1.0
2,178,011	-		BBR_RS19580	0.38	-1.9
2,178,015	+		BBR_RS19580	0.39	-0.4
2,178,023	-		BBR_RS19580	0.39	-0.8
2,178,038	+		BBR_RS19580	0.40	-0.1
2,178,045	-		BBR_RS19580	0.41	-1.0
2,178,072	+		BBR_RS19580	0.43	-2.4
2,178,072	+		BBR_RS19580	0.43	+1.5
2,178,080	-		BBR_RS19580	0.44	-0.1
2,178,080	-		BBR_RS19580	0.44	+1.2
2,178,095	-		BBR_RS19580	0.45	+0.3
2,178,095	-		BBR_RS19580	0.45	-1.1
2,178,106	-		BBR_RS19580	0.45	-2.2
2,178,108	+		BBR_RS19580	0.46	-0.9
2,178,113	+		BBR_RS19580	0.46	-0.6
2,178,113	+		BBR_RS19580	0.46	-0.2
2,178,192	+		BBR_RS19580	0.52	+1.3
2,178,201	-		BBR_RS19580	0.52	-2.1
2,178,201	-		BBR_RS19580	0.52	+0.2
2,178,205	+		BBR_RS19580	0.53	+0.6
2,178,205	+		BBR_RS19580	0.53	+0.4
2,178,211	-		BBR_RS19580	0.53	+1.9
2,178,218	+		BBR_RS19580	0.54	-2.2
2,178,226	+		BBR_RS19580	0.54	-0.3
2,178,242	+		BBR_RS19580	0.56	-0.5
2,178,245	-		BBR_RS19580	0.56	-0.5
2,178,250	-		BBR_RS19580	0.56	-1.8
2,178,250	-		BBR_RS19580	0.56	+0.0
2,178,252	+		BBR_RS19580	0.56	-1.5
2,178,252	+		BBR_RS19580	0.56	-1.2
2,178,252	+		BBR_RS19580	0.56	-0.7
2,178,252	+		BBR_RS19580	0.56	-1.1
2,178,252	+		BBR_RS19580	0.56	+0.2
2,178,252	+		BBR_RS19580	0.56	-1.4
2,178,252	+		BBR_RS19580	0.56	-2.6
2,178,252	+		BBR_RS19580	0.56	+0.4
2,178,252	+		BBR_RS19580	0.56	-0.4
2,178,258	+		BBR_RS19580	0.57	+0.8
2,178,260	-		BBR_RS19580	0.57	+1.2
2,178,260	-		BBR_RS19580	0.57	-0.1
2,178,260	-		BBR_RS19580	0.57	+1.0
2,178,264	+		BBR_RS19580	0.57	-0.7
2,178,272	-		BBR_RS19580	0.58	-0.9
2,178,272	-		BBR_RS19580	0.58	-0.3
2,178,274	+		BBR_RS19580	0.58	-1.1
2,178,282	-		BBR_RS19580	0.59	-1.8
2,178,292	-		BBR_RS19580	0.59	+2.8
2,178,316	+		BBR_RS19580	0.61	-0.2
2,178,327	+		BBR_RS19580	0.62	-0.5
2,178,343	+		BBR_RS19580	0.63	+0.2
2,178,345	+		BBR_RS19580	0.63	-1.8
2,178,353	-		BBR_RS19580	0.64	-1.2
2,178,355	+		BBR_RS19580	0.64	-0.8
2,178,360	-		BBR_RS19580	0.64	-1.7
2,178,363	-		BBR_RS19580	0.65	-0.4
2,178,389	-		BBR_RS19580	0.66	+0.7
2,178,401	+		BBR_RS19580	0.67	+0.3
2,178,401	+		BBR_RS19580	0.67	+1.3
2,178,411	+		BBR_RS19580	0.68	-1.6
2,178,419	+		BBR_RS19580	0.69	-0.9
2,178,437	+		BBR_RS19580	0.70	-0.8
2,178,440	-		BBR_RS19580	0.70	-1.2
2,178,454	+		BBR_RS19580	0.71	+0.8
2,178,469	+		BBR_RS19580	0.72	-0.2
2,178,474	+		BBR_RS19580	0.73	-1.8
2,178,474	-		BBR_RS19580	0.73	+0.6
2,178,482	-		BBR_RS19580	0.73	+0.1
2,178,484	+		BBR_RS19580	0.73	-0.4
2,178,515	+		BBR_RS19580	0.76	+0.4
2,178,520	+		BBR_RS19580	0.76	+1.0
2,178,520	+		BBR_RS19580	0.76	+0.9
2,178,520	+		BBR_RS19580	0.76	+1.2
2,178,520	+		BBR_RS19580	0.76	-0.0
2,178,520	+		BBR_RS19580	0.76	-1.0
2,178,520	+		BBR_RS19580	0.76	+0.8
2,178,520	+		BBR_RS19580	0.76	-1.2
2,178,520	+		BBR_RS19580	0.76	-0.8
2,178,523	-		BBR_RS19580	0.76	-0.5
2,178,523	-		BBR_RS19580	0.76	+0.6
2,178,523	-		BBR_RS19580	0.76	-0.5
2,178,523	-		BBR_RS19580	0.76	+0.3
2,178,525	+		BBR_RS19580	0.77	-0.0
2,178,528	-		BBR_RS19580	0.77	-1.1
2,178,528	-		BBR_RS19580	0.77	-0.1
2,178,528	-		BBR_RS19580	0.77	-0.1
2,178,528	-		BBR_RS19580	0.77	+0.2
2,178,528	-		BBR_RS19580	0.77	+0.6
2,178,528	-		BBR_RS19580	0.77	-0.1
2,178,528	-		BBR_RS19580	0.77	-1.4
2,178,528	-		BBR_RS19580	0.77	-0.5
2,178,528	-		BBR_RS19580	0.77	+1.9
2,178,528	-		BBR_RS19580	0.77	+0.1
2,178,528	-		BBR_RS19580	0.77	+1.1
2,178,533	-		BBR_RS19580	0.77	-0.2
2,178,538	+		BBR_RS19580	0.78	-1.8
2,178,582	+		BBR_RS19580	0.81	+0.6
2,178,590	-		BBR_RS19580	0.81	+0.4
2,178,595	+		BBR_RS19580	0.82	-1.6
2,178,597	+		BBR_RS19580	0.82	+0.8
2,178,597	+		BBR_RS19580	0.82	-1.5
2,178,597	+		BBR_RS19580	0.82	-1.1
2,178,608	+		BBR_RS19580	0.83	-2.1
2,178,608	+		BBR_RS19580	0.83	-1.8
2,178,608	+		BBR_RS19580	0.83	-0.2
2,178,608	+		BBR_RS19580	0.83	+0.5
2,178,611	+		BBR_RS19580	0.83	+1.0
2,178,612	-		BBR_RS19580	0.83	+0.9
2,178,614	-		BBR_RS19580	0.83	-1.8
2,178,614	-		BBR_RS19580	0.83	-0.9
2,178,614	-		BBR_RS19580	0.83	-0.7
2,178,616	-		BBR_RS19580	0.83	+0.2
2,178,616	-		BBR_RS19580	0.83	-0.8
2,178,617	-		BBR_RS19580	0.83	+0.2
2,178,618	+		BBR_RS19580	0.83	+1.6
2,178,623	+		BBR_RS19580	0.84	-0.0
2,178,623	+		BBR_RS19580	0.84	+0.3
2,178,623	+		BBR_RS19580	0.84	+0.4
2,178,623	+		BBR_RS19580	0.84	+2.1
2,178,623	+		BBR_RS19580	0.84	-0.7
2,178,626	-		BBR_RS19580	0.84	+0.4
2,178,628	+		BBR_RS19580	0.84	-0.4
2,178,628	+		BBR_RS19580	0.84	-2.1
2,178,631	-		BBR_RS19580	0.84	-1.3
2,178,631	-		BBR_RS19580	0.84	-1.7
2,178,636	-		BBR_RS19580	0.85	-0.9
2,178,636	-		BBR_RS19580	0.85	+1.8
2,178,636	-		BBR_RS19580	0.85	+0.1
2,178,636	-		BBR_RS19580	0.85	+1.0
2,178,643	+		BBR_RS19580	0.85	+2.2
2,178,643	+		BBR_RS19580	0.85	-0.3
2,178,643	+		BBR_RS19580	0.85	-1.4
2,178,650	+		BBR_RS19580	0.86	-1.1
2,178,650	+		BBR_RS19580	0.86	-0.4
2,178,651	-		BBR_RS19580	0.86	-0.1
2,178,657	+		BBR_RS19580	0.86	-2.3
2,178,657	+		BBR_RS19580	0.86	-1.2
2,178,657	+		BBR_RS19580	0.86	-1.7
2,178,657	+		BBR_RS19580	0.86	-2.1
2,178,657	+		BBR_RS19580	0.86	+0.2
2,178,662	+		BBR_RS19580	0.87	-1.3
2,178,665	-		BBR_RS19580	0.87	-3.1
2,178,665	-		BBR_RS19580	0.87	-0.8
2,178,665	-		BBR_RS19580	0.87	-1.6
2,178,665	-		BBR_RS19580	0.87	-0.9
2,178,665	-		BBR_RS19580	0.87	+0.0
2,178,665	-		BBR_RS19580	0.87	-1.1
2,178,667	+		BBR_RS19580	0.87	+0.1
2,178,667	+		BBR_RS19580	0.87	-1.4
2,178,667	+		BBR_RS19580	0.87	-1.6
2,178,667	+		BBR_RS19580	0.87	+1.8
2,178,672	+		BBR_RS19580	0.87	+0.5
2,178,672	+		BBR_RS19580	0.87	-1.7
2,178,672	+		BBR_RS19580	0.87	-1.1
2,178,675	-		BBR_RS19580	0.88	-1.0
2,178,680	-		BBR_RS19580	0.88	-2.2
2,178,680	-		BBR_RS19580	0.88	+0.4
2,178,680	-		BBR_RS19580	0.88	+0.2
2,178,680	-		BBR_RS19580	0.88	-0.3
2,178,721	+				-0.3
2,178,721	+				-0.1
2,178,733	+				+0.3
2,178,767	+				+2.3
2,178,767	+				-0.9
2,178,767	+				-1.8
2,178,775	-				-1.9
2,178,775	-				+0.4
2,178,795	+				-1.4
2,178,812	-				+0.7
2,178,825	+				+0.6
2,178,825	-				+0.8
2,178,833	-				-0.2
2,178,844	+				+0.1
2,178,868	+				-1.3
2,178,870	+				-1.0
2,178,896	+				+1.1
2,178,924	+				-1.6
2,178,930	+				-0.1
2,178,932	+				-1.1
2,178,941	-				+0.9
2,178,950	-				+0.6
2,178,967	-				+0.9
2,178,967	-				-0.3
2,179,041	-				-0.4
2,179,099	+				-1.0
2,179,101	-				-0.1
2,179,147	-				-1.7
2,179,172	+				+0.6
2,179,172	+				-0.6
2,179,172	-				-2.3
2,179,172	-				-0.3
2,179,172	-				-2.1
2,179,172	-				+0.8
2,179,175	-				-0.2
2,179,195	-				+1.0
2,179,214	+				+0.3
2,179,214	+				+0.6
2,179,221	+				+1.3
2,179,221	+				+0.8
2,179,221	+				+0.4
2,179,221	+				-0.6
2,179,221	+				-0.2
2,179,222	-				+1.2
2,179,229	-				-2.0
2,179,229	-				-1.7
2,179,229	-				-2.2
2,179,229	-				+0.9
2,179,242	-				+0.5
2,179,245	-				+0.7
2,179,254	+				+1.4
2,179,260	-				+1.6
2,179,283	+				+0.2
2,179,337	-				-0.8
2,179,347	-				-0.0
2,179,351	-				-0.3
2,179,360	-				+0.2
2,179,417	+		BBR_RS19585	0.16	-2.6
2,179,417	+		BBR_RS19585	0.16	-0.6
2,179,420	-		BBR_RS19585	0.16	+1.9
2,179,421	+		BBR_RS19585	0.17	-1.1
2,179,515	-		BBR_RS19585	0.28	-0.2
2,179,515	-		BBR_RS19585	0.28	+0.4
2,179,516	+		BBR_RS19585	0.28	-0.2
2,179,516	+		BBR_RS19585	0.28	-0.7
2,179,516	+		BBR_RS19585	0.28	+1.2
2,179,516	+		BBR_RS19585	0.28	+0.0
2,179,523	+		BBR_RS19585	0.29	-0.2
2,179,524	-		BBR_RS19585	0.29	+0.9
2,179,524	-		BBR_RS19585	0.29	-1.3
2,179,553	+		BBR_RS19585	0.32	-0.7
2,179,554	+		BBR_RS19585	0.32	+0.4
2,179,596	-		BBR_RS19585	0.37	+0.1
2,179,627	+		BBR_RS19585	0.41	-1.4
2,179,627	+		BBR_RS19585	0.41	-1.2
2,179,627	+		BBR_RS19585	0.41	+0.8
2,179,635	-		BBR_RS19585	0.42	+0.2
2,179,635	-		BBR_RS19585	0.42	-0.0
2,179,653	-		BBR_RS19585	0.44	-0.8
2,179,668	+		BBR_RS19585	0.46	-1.5
2,179,682	-		BBR_RS19585	0.47	+1.3
2,179,695	-		BBR_RS19585	0.49	+1.0
2,179,704	+		BBR_RS19585	0.50	-0.6
2,179,711	+		BBR_RS19585	0.51	-1.1
2,179,711	+		BBR_RS19585	0.51	+1.2
2,179,717	+		BBR_RS19585	0.51	+1.7
2,179,717	-		BBR_RS19585	0.51	-0.8
2,179,719	-		BBR_RS19585	0.52	+0.3
2,179,748	-		BBR_RS19585	0.55	+0.8
2,179,758	+		BBR_RS19585	0.56	-0.3
2,179,761	-		BBR_RS19585	0.56	+1.2
2,179,761	-		BBR_RS19585	0.56	+0.0
2,179,795	+		BBR_RS19585	0.60	-0.0
2,179,795	+		BBR_RS19585	0.60	+1.0
2,179,829	-		BBR_RS19585	0.64	+0.6
2,179,831	+		BBR_RS19585	0.65	+0.1