Experiment: cage3; mouse1; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS14365 and BBR_RS14370 are separated by 27 nucleotides BBR_RS14370 and BBR_RS14375 are separated by 227 nucleotides
BBR_RS14365: BBR_RS14365 - hypothetical protein, at 996,344 to 997,516
_RS14365
BBR_RS14370: BBR_RS14370 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 997,544 to 998,878
_RS14370
BBR_RS14375: BBR_RS14375 - acetate kinase, at 999,106 to 1,000,335
_RS14375
Position (kb) 997
998
999 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 996.565 kb on + strand, within BBR_RS14365 at 996.578 kb on - strand, within BBR_RS14365 at 996.616 kb on + strand, within BBR_RS14365 at 996.616 kb on + strand, within BBR_RS14365 at 996.730 kb on - strand, within BBR_RS14365 at 996.742 kb on + strand, within BBR_RS14365 at 996.833 kb on + strand, within BBR_RS14365 at 996.848 kb on + strand, within BBR_RS14365 at 996.928 kb on + strand, within BBR_RS14365 at 996.932 kb on - strand, within BBR_RS14365 at 997.011 kb on + strand, within BBR_RS14365 at 997.021 kb on + strand, within BBR_RS14365 at 997.021 kb on + strand, within BBR_RS14365 at 997.029 kb on - strand, within BBR_RS14365 at 997.143 kb on - strand, within BBR_RS14365 at 997.150 kb on - strand, within BBR_RS14365 at 997.150 kb on - strand, within BBR_RS14365 at 997.293 kb on + strand, within BBR_RS14365 at 997.344 kb on - strand, within BBR_RS14365 at 997.346 kb on + strand, within BBR_RS14365 at 997.423 kb on + strand at 997.423 kb on + strand at 997.510 kb on + strand at 997.510 kb on + strand at 997.548 kb on - strand at 997.564 kb on + strand at 997.750 kb on + strand, within BBR_RS14370 at 997.777 kb on - strand, within BBR_RS14370 at 997.779 kb on + strand, within BBR_RS14370 at 997.793 kb on - strand, within BBR_RS14370 at 997.853 kb on + strand, within BBR_RS14370 at 997.861 kb on - strand, within BBR_RS14370 at 997.872 kb on + strand, within BBR_RS14370 at 997.911 kb on + strand, within BBR_RS14370 at 997.954 kb on - strand, within BBR_RS14370 at 997.964 kb on - strand, within BBR_RS14370 at 998.056 kb on + strand, within BBR_RS14370 at 998.150 kb on + strand, within BBR_RS14370 at 998.150 kb on + strand, within BBR_RS14370 at 998.186 kb on + strand, within BBR_RS14370 at 998.187 kb on - strand, within BBR_RS14370 at 998.348 kb on + strand, within BBR_RS14370 at 998.358 kb on + strand, within BBR_RS14370 at 998.363 kb on - strand, within BBR_RS14370 at 998.555 kb on + strand, within BBR_RS14370 at 998.712 kb on + strand, within BBR_RS14370 at 998.718 kb on - strand, within BBR_RS14370 at 998.873 kb on + strand at 998.878 kb on + strand at 998.907 kb on + strand at 998.931 kb on + strand at 998.960 kb on - strand at 998.969 kb on + strand at 998.979 kb on + strand at 998.979 kb on + strand at 999.026 kb on + strand at 999.071 kb on - strand at 999.119 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction cage3; mouse1; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs remove 996,565 + BBR_RS14365 0.19 +0.2 996,578 - BBR_RS14365 0.20 -1.8 996,616 + BBR_RS14365 0.23 -2.7 996,616 + BBR_RS14365 0.23 +0.8 996,730 - BBR_RS14365 0.33 +0.6 996,742 + BBR_RS14365 0.34 -1.6 996,833 + BBR_RS14365 0.42 +0.4 996,848 + BBR_RS14365 0.43 -0.0 996,928 + BBR_RS14365 0.50 -1.3 996,932 - BBR_RS14365 0.50 +0.2 997,011 + BBR_RS14365 0.57 -2.6 997,021 + BBR_RS14365 0.58 +1.3 997,021 + BBR_RS14365 0.58 +0.7 997,029 - BBR_RS14365 0.58 -2.0 997,143 - BBR_RS14365 0.68 +0.6 997,150 - BBR_RS14365 0.69 +0.6 997,150 - BBR_RS14365 0.69 +2.3 997,293 + BBR_RS14365 0.81 +1.8 997,344 - BBR_RS14365 0.85 +0.7 997,346 + BBR_RS14365 0.85 +0.1 997,423 + -0.2 997,423 + +0.8 997,510 + -1.9 997,510 + +1.2 997,548 - -1.3 997,564 + +0.7 997,750 + BBR_RS14370 0.15 +1.2 997,777 - BBR_RS14370 0.17 -2.3 997,779 + BBR_RS14370 0.18 -0.8 997,793 - BBR_RS14370 0.19 +0.3 997,853 + BBR_RS14370 0.23 -0.1 997,861 - BBR_RS14370 0.24 -0.9 997,872 + BBR_RS14370 0.25 -1.2 997,911 + BBR_RS14370 0.27 -1.2 997,954 - BBR_RS14370 0.31 -2.0 997,964 - BBR_RS14370 0.31 -0.3 998,056 + BBR_RS14370 0.38 -2.1 998,150 + BBR_RS14370 0.45 -1.2 998,150 + BBR_RS14370 0.45 -0.9 998,186 + BBR_RS14370 0.48 +0.1 998,187 - BBR_RS14370 0.48 -0.2 998,348 + BBR_RS14370 0.60 -2.2 998,358 + BBR_RS14370 0.61 -2.0 998,363 - BBR_RS14370 0.61 -0.4 998,555 + BBR_RS14370 0.76 -2.9 998,712 + BBR_RS14370 0.87 -2.0 998,718 - BBR_RS14370 0.88 -1.9 998,873 + -1.8 998,878 + -0.9 998,907 + -0.6 998,931 + +0.8 998,960 - -0.8 998,969 + +1.3 998,979 + -1.2 998,979 + -1.1 999,026 + +1.2 999,071 - -1.2 999,119 + +2.0
Or see this region's nucleotide sequence