Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS11990

Experiment: cage3; mouse1; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS11980 and BBR_RS11985 are separated by 104 nucleotidesBBR_RS11985 and BBR_RS11990 are separated by 221 nucleotidesBBR_RS11990 and BBR_RS11995 are separated by 344 nucleotides BBR_RS11980: BBR_RS11980 - phage integrase, at 440,392 to 441,216 _RS11980 BBR_RS11985: BBR_RS11985 - tRNA-Met, at 441,321 to 441,397 _RS11985 BBR_RS11990: BBR_RS11990 - homoserine O-succinyltransferase, at 441,619 to 442,653 _RS11990 BBR_RS11995: BBR_RS11995 - ATP synthase F0 subunit A, at 442,998 to 443,807 _RS11995 Position (kb) 441 442 443Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 440.636 kb on - strand, within BBR_RS11980at 440.638 kb on + strand, within BBR_RS11980at 440.638 kb on - strand, within BBR_RS11980at 440.651 kb on - strand, within BBR_RS11980at 440.651 kb on - strand, within BBR_RS11980at 440.686 kb on + strand, within BBR_RS11980at 440.686 kb on + strand, within BBR_RS11980at 440.693 kb on + strand, within BBR_RS11980at 440.694 kb on - strand, within BBR_RS11980at 440.700 kb on + strand, within BBR_RS11980at 440.706 kb on - strand, within BBR_RS11980at 440.724 kb on + strand, within BBR_RS11980at 440.730 kb on + strand, within BBR_RS11980at 440.730 kb on - strand, within BBR_RS11980at 440.732 kb on - strand, within BBR_RS11980at 440.732 kb on - strand, within BBR_RS11980at 440.732 kb on - strand, within BBR_RS11980at 440.738 kb on + strand, within BBR_RS11980at 440.745 kb on - strand, within BBR_RS11980at 440.748 kb on - strand, within BBR_RS11980at 440.781 kb on + strand, within BBR_RS11980at 440.790 kb on + strand, within BBR_RS11980at 440.799 kb on - strand, within BBR_RS11980at 440.799 kb on - strand, within BBR_RS11980at 440.799 kb on - strand, within BBR_RS11980at 440.808 kb on - strand, within BBR_RS11980at 440.818 kb on + strand, within BBR_RS11980at 440.836 kb on + strand, within BBR_RS11980at 440.855 kb on + strand, within BBR_RS11980at 440.857 kb on - strand, within BBR_RS11980at 440.857 kb on - strand, within BBR_RS11980at 440.870 kb on + strand, within BBR_RS11980at 440.877 kb on + strand, within BBR_RS11980at 440.883 kb on + strand, within BBR_RS11980at 440.890 kb on - strand, within BBR_RS11980at 440.892 kb on - strand, within BBR_RS11980at 440.896 kb on - strand, within BBR_RS11980at 440.898 kb on - strand, within BBR_RS11980at 440.903 kb on - strand, within BBR_RS11980at 440.912 kb on - strand, within BBR_RS11980at 440.926 kb on + strand, within BBR_RS11980at 440.926 kb on + strand, within BBR_RS11980at 440.934 kb on - strand, within BBR_RS11980at 440.934 kb on - strand, within BBR_RS11980at 440.934 kb on - strand, within BBR_RS11980at 440.936 kb on + strand, within BBR_RS11980at 440.936 kb on + strand, within BBR_RS11980at 440.936 kb on + strand, within BBR_RS11980at 440.944 kb on - strand, within BBR_RS11980at 440.944 kb on - strand, within BBR_RS11980at 440.973 kb on + strand, within BBR_RS11980at 440.973 kb on + strand, within BBR_RS11980at 441.072 kb on - strand, within BBR_RS11980at 441.077 kb on - strand, within BBR_RS11980at 441.084 kb on - strand, within BBR_RS11980at 441.085 kb on - strand, within BBR_RS11980at 441.105 kb on + strand, within BBR_RS11980at 441.154 kb on - strandat 441.154 kb on - strandat 441.178 kb on - strandat 441.197 kb on + strandat 441.212 kb on - strandat 441.223 kb on + strandat 441.224 kb on + strandat 441.320 kb on - strandat 441.479 kb on + strandat 441.515 kb on - strandat 441.527 kb on - strandat 441.558 kb on + strandat 441.558 kb on + strandat 441.579 kb on + strandat 441.605 kb on + strandat 441.605 kb on + strandat 441.615 kb on + strandat 441.623 kb on - strandat 441.678 kb on - strandat 441.693 kb on + strandat 441.693 kb on + strandat 441.701 kb on - strandat 441.705 kb on + strandat 441.713 kb on - strandat 441.722 kb on + strandat 441.802 kb on + strand, within BBR_RS11990at 441.802 kb on + strand, within BBR_RS11990at 441.810 kb on + strand, within BBR_RS11990at 441.818 kb on - strand, within BBR_RS11990at 441.841 kb on + strand, within BBR_RS11990at 441.846 kb on + strand, within BBR_RS11990at 441.846 kb on + strand, within BBR_RS11990at 441.846 kb on + strand, within BBR_RS11990at 441.846 kb on + strand, within BBR_RS11990at 441.850 kb on + strand, within BBR_RS11990at 441.863 kb on - strand, within BBR_RS11990at 441.871 kb on - strand, within BBR_RS11990at 441.876 kb on - strand, within BBR_RS11990at 441.923 kb on + strand, within BBR_RS11990at 441.923 kb on + strand, within BBR_RS11990at 441.933 kb on + strand, within BBR_RS11990at 441.943 kb on + strand, within BBR_RS11990at 441.943 kb on + strand, within BBR_RS11990at 441.943 kb on + strand, within BBR_RS11990at 441.951 kb on + strand, within BBR_RS11990at 441.951 kb on + strand, within BBR_RS11990at 441.958 kb on - strand, within BBR_RS11990at 441.977 kb on + strand, within BBR_RS11990at 441.977 kb on + strand, within BBR_RS11990at 441.983 kb on - strand, within BBR_RS11990at 441.997 kb on + strand, within BBR_RS11990at 441.997 kb on + strand, within BBR_RS11990at 442.005 kb on - strand, within BBR_RS11990at 442.005 kb on - strand, within BBR_RS11990at 442.013 kb on + strand, within BBR_RS11990at 442.015 kb on + strand, within BBR_RS11990at 442.018 kb on + strand, within BBR_RS11990at 442.023 kb on + strand, within BBR_RS11990at 442.026 kb on - strand, within BBR_RS11990at 442.031 kb on + strand, within BBR_RS11990at 442.039 kb on - strand, within BBR_RS11990at 442.039 kb on - strand, within BBR_RS11990at 442.041 kb on + strand, within BBR_RS11990at 442.041 kb on - strand, within BBR_RS11990at 442.046 kb on + strand, within BBR_RS11990at 442.048 kb on + strand, within BBR_RS11990at 442.063 kb on + strand, within BBR_RS11990at 442.063 kb on + strand, within BBR_RS11990at 442.079 kb on - strand, within BBR_RS11990at 442.079 kb on - strand, within BBR_RS11990at 442.079 kb on - strand, within BBR_RS11990at 442.083 kb on + strand, within BBR_RS11990at 442.092 kb on + strand, within BBR_RS11990at 442.115 kb on - strand, within BBR_RS11990at 442.138 kb on + strand, within BBR_RS11990at 442.143 kb on + strand, within BBR_RS11990at 442.146 kb on - strand, within BBR_RS11990at 442.146 kb on - strand, within BBR_RS11990at 442.148 kb on + strand, within BBR_RS11990at 442.180 kb on + strand, within BBR_RS11990at 442.195 kb on + strand, within BBR_RS11990at 442.195 kb on + strand, within BBR_RS11990at 442.195 kb on + strand, within BBR_RS11990at 442.213 kb on - strand, within BBR_RS11990at 442.214 kb on + strand, within BBR_RS11990at 442.214 kb on + strand, within BBR_RS11990at 442.231 kb on - strand, within BBR_RS11990at 442.245 kb on + strand, within BBR_RS11990at 442.253 kb on - strand, within BBR_RS11990at 442.258 kb on + strand, within BBR_RS11990at 442.259 kb on - strand, within BBR_RS11990at 442.259 kb on - strand, within BBR_RS11990at 442.259 kb on - strand, within BBR_RS11990at 442.269 kb on - strand, within BBR_RS11990at 442.270 kb on + strand, within BBR_RS11990at 442.271 kb on + strand, within BBR_RS11990at 442.276 kb on + strand, within BBR_RS11990at 442.278 kb on + strand, within BBR_RS11990at 442.279 kb on - strand, within BBR_RS11990at 442.279 kb on - strand, within BBR_RS11990at 442.298 kb on + strand, within BBR_RS11990at 442.298 kb on + strand, within BBR_RS11990at 442.327 kb on + strand, within BBR_RS11990at 442.335 kb on - strand, within BBR_RS11990at 442.354 kb on + strand, within BBR_RS11990at 442.371 kb on + strand, within BBR_RS11990at 442.371 kb on + strand, within BBR_RS11990at 442.383 kb on + strand, within BBR_RS11990at 442.383 kb on + strand, within BBR_RS11990at 442.385 kb on + strand, within BBR_RS11990at 442.385 kb on + strand, within BBR_RS11990at 442.385 kb on + strand, within BBR_RS11990at 442.386 kb on - strand, within BBR_RS11990at 442.387 kb on + strand, within BBR_RS11990at 442.388 kb on - strand, within BBR_RS11990at 442.404 kb on + strand, within BBR_RS11990at 442.456 kb on - strand, within BBR_RS11990at 442.490 kb on + strand, within BBR_RS11990at 442.493 kb on + strand, within BBR_RS11990at 442.497 kb on + strand, within BBR_RS11990at 442.497 kb on + strand, within BBR_RS11990at 442.498 kb on + strand, within BBR_RS11990at 442.501 kb on - strand, within BBR_RS11990at 442.501 kb on - strand, within BBR_RS11990at 442.505 kb on - strand, within BBR_RS11990at 442.519 kb on - strand, within BBR_RS11990at 442.519 kb on - strand, within BBR_RS11990at 442.554 kb on + strandat 442.562 kb on - strandat 442.562 kb on - strandat 442.592 kb on - strandat 442.637 kb on + strandat 442.637 kb on + strandat 442.642 kb on + strandat 442.645 kb on - strandat 442.655 kb on + strandat 442.660 kb on + strandat 442.660 kb on + strandat 442.759 kb on + strandat 442.759 kb on + strandat 442.778 kb on - strandat 442.809 kb on + strandat 442.816 kb on - strandat 442.816 kb on - strandat 442.816 kb on - strandat 442.816 kb on - strandat 442.817 kb on - strandat 442.819 kb on + strandat 442.820 kb on + strandat 442.827 kb on - strandat 442.843 kb on + strandat 442.853 kb on + strandat 442.853 kb on + strandat 442.867 kb on + strandat 442.883 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction cage3; mouse1; day4; diet=PolysaccharideDeficient; sample=FecalPellet; coculture=Btheta_VPI5482; stagger=24hrs
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440,636 - BBR_RS11980 0.30 -0.0
440,638 + BBR_RS11980 0.30 -0.7
440,638 - BBR_RS11980 0.30 -0.4
440,651 - BBR_RS11980 0.31 -1.2
440,651 - BBR_RS11980 0.31 -1.3
440,686 + BBR_RS11980 0.36 -0.1
440,686 + BBR_RS11980 0.36 +0.6
440,693 + BBR_RS11980 0.36 -2.2
440,694 - BBR_RS11980 0.37 -0.4
440,700 + BBR_RS11980 0.37 -0.7
440,706 - BBR_RS11980 0.38 +0.6
440,724 + BBR_RS11980 0.40 +1.4
440,730 + BBR_RS11980 0.41 -2.1
440,730 - BBR_RS11980 0.41 -3.4
440,732 - BBR_RS11980 0.41 -0.9
440,732 - BBR_RS11980 0.41 +0.2
440,732 - BBR_RS11980 0.41 -0.2
440,738 + BBR_RS11980 0.42 +1.0
440,745 - BBR_RS11980 0.43 -0.5
440,748 - BBR_RS11980 0.43 +1.2
440,781 + BBR_RS11980 0.47 +1.1
440,790 + BBR_RS11980 0.48 -0.2
440,799 - BBR_RS11980 0.49 +0.7
440,799 - BBR_RS11980 0.49 -0.8
440,799 - BBR_RS11980 0.49 +1.1
440,808 - BBR_RS11980 0.50 -2.6
440,818 + BBR_RS11980 0.52 -0.3
440,836 + BBR_RS11980 0.54 +0.7
440,855 + BBR_RS11980 0.56 +0.2
440,857 - BBR_RS11980 0.56 -0.1
440,857 - BBR_RS11980 0.56 -0.8
440,870 + BBR_RS11980 0.58 -0.3
440,877 + BBR_RS11980 0.59 +0.4
440,883 + BBR_RS11980 0.60 +0.1
440,890 - BBR_RS11980 0.60 -1.5
440,892 - BBR_RS11980 0.61 -0.8
440,896 - BBR_RS11980 0.61 +1.5
440,898 - BBR_RS11980 0.61 +0.4
440,903 - BBR_RS11980 0.62 -0.3
440,912 - BBR_RS11980 0.63 +0.0
440,926 + BBR_RS11980 0.65 +0.5
440,926 + BBR_RS11980 0.65 +0.3
440,934 - BBR_RS11980 0.66 +0.5
440,934 - BBR_RS11980 0.66 +0.3
440,934 - BBR_RS11980 0.66 +0.8
440,936 + BBR_RS11980 0.66 -0.0
440,936 + BBR_RS11980 0.66 -1.0
440,936 + BBR_RS11980 0.66 +0.2
440,944 - BBR_RS11980 0.67 +0.2
440,944 - BBR_RS11980 0.67 -0.8
440,973 + BBR_RS11980 0.70 -2.3
440,973 + BBR_RS11980 0.70 -0.1
441,072 - BBR_RS11980 0.82 +0.3
441,077 - BBR_RS11980 0.83 -0.8
441,084 - BBR_RS11980 0.84 +0.1
441,085 - BBR_RS11980 0.84 +1.0
441,105 + BBR_RS11980 0.86 +0.6
441,154 - +0.2
441,154 - +1.4
441,178 - +0.0
441,197 + +0.8
441,212 - +0.6
441,223 + -0.1
441,224 + +1.7
441,320 - +0.3
441,479 + +1.6
441,515 - +0.0
441,527 - -1.2
441,558 + +0.2
441,558 + +0.8
441,579 + +0.7
441,605 + +1.2
441,605 + -0.7
441,615 + -3.6
441,623 - -0.3
441,678 - -2.4
441,693 + -3.7
441,693 + -3.6
441,701 - -2.2
441,705 + -1.3
441,713 - -1.8
441,722 + +0.3
441,802 + BBR_RS11990 0.18 -3.3
441,802 + BBR_RS11990 0.18 -2.4
441,810 + BBR_RS11990 0.18 +1.8
441,818 - BBR_RS11990 0.19 -2.1
441,841 + BBR_RS11990 0.21 +0.3
441,846 + BBR_RS11990 0.22 -4.4
441,846 + BBR_RS11990 0.22 -1.0
441,846 + BBR_RS11990 0.22 -1.4
441,846 + BBR_RS11990 0.22 -1.0
441,850 + BBR_RS11990 0.22 -0.5
441,863 - BBR_RS11990 0.24 -2.5
441,871 - BBR_RS11990 0.24 -1.3
441,876 - BBR_RS11990 0.25 -1.6
441,923 + BBR_RS11990 0.29 -2.8
441,923 + BBR_RS11990 0.29 -2.7
441,933 + BBR_RS11990 0.30 -4.2
441,943 + BBR_RS11990 0.31 -2.7
441,943 + BBR_RS11990 0.31 -2.7
441,943 + BBR_RS11990 0.31 -1.3
441,951 + BBR_RS11990 0.32 -2.1
441,951 + BBR_RS11990 0.32 +1.5
441,958 - BBR_RS11990 0.33 -1.5
441,977 + BBR_RS11990 0.35 -0.9
441,977 + BBR_RS11990 0.35 -4.6
441,983 - BBR_RS11990 0.35 -1.7
441,997 + BBR_RS11990 0.37 -1.8
441,997 + BBR_RS11990 0.37 -1.7
442,005 - BBR_RS11990 0.37 -2.9
442,005 - BBR_RS11990 0.37 -2.8
442,013 + BBR_RS11990 0.38 -3.1
442,015 + BBR_RS11990 0.38 -1.7
442,018 + BBR_RS11990 0.39 -1.9
442,023 + BBR_RS11990 0.39 -2.3
442,026 - BBR_RS11990 0.39 -0.5
442,031 + BBR_RS11990 0.40 -2.5
442,039 - BBR_RS11990 0.41 -3.5
442,039 - BBR_RS11990 0.41 -2.6
442,041 + BBR_RS11990 0.41 -2.5
442,041 - BBR_RS11990 0.41 -1.8
442,046 + BBR_RS11990 0.41 -2.3
442,048 + BBR_RS11990 0.41 -1.3
442,063 + BBR_RS11990 0.43 -1.0
442,063 + BBR_RS11990 0.43 -3.8
442,079 - BBR_RS11990 0.44 -1.5
442,079 - BBR_RS11990 0.44 -3.6
442,079 - BBR_RS11990 0.44 -2.3
442,083 + BBR_RS11990 0.45 -2.6
442,092 + BBR_RS11990 0.46 -4.9
442,115 - BBR_RS11990 0.48 -2.4
442,138 + BBR_RS11990 0.50 -1.9
442,143 + BBR_RS11990 0.51 -0.6
442,146 - BBR_RS11990 0.51 -2.6
442,146 - BBR_RS11990 0.51 -2.5
442,148 + BBR_RS11990 0.51 -2.0
442,180 + BBR_RS11990 0.54 -1.6
442,195 + BBR_RS11990 0.56 -3.6
442,195 + BBR_RS11990 0.56 -3.0
442,195 + BBR_RS11990 0.56 -1.6
442,213 - BBR_RS11990 0.57 -1.1
442,214 + BBR_RS11990 0.57 -1.3
442,214 + BBR_RS11990 0.57 -1.4
442,231 - BBR_RS11990 0.59 -2.8
442,245 + BBR_RS11990 0.60 -2.1
442,253 - BBR_RS11990 0.61 -3.4
442,258 + BBR_RS11990 0.62 -3.3
442,259 - BBR_RS11990 0.62 -2.9
442,259 - BBR_RS11990 0.62 -2.3
442,259 - BBR_RS11990 0.62 -4.1
442,269 - BBR_RS11990 0.63 -2.2
442,270 + BBR_RS11990 0.63 -3.3
442,271 + BBR_RS11990 0.63 -2.8
442,276 + BBR_RS11990 0.63 -2.6
442,278 + BBR_RS11990 0.64 -2.2
442,279 - BBR_RS11990 0.64 -4.0
442,279 - BBR_RS11990 0.64 -1.6
442,298 + BBR_RS11990 0.66 -3.1
442,298 + BBR_RS11990 0.66 -3.2
442,327 + BBR_RS11990 0.68 -3.5
442,335 - BBR_RS11990 0.69 -0.9
442,354 + BBR_RS11990 0.71 -1.4
442,371 + BBR_RS11990 0.73 -0.8
442,371 + BBR_RS11990 0.73 -2.6
442,383 + BBR_RS11990 0.74 -3.5
442,383 + BBR_RS11990 0.74 -1.5
442,385 + BBR_RS11990 0.74 -2.2
442,385 + BBR_RS11990 0.74 -3.5
442,385 + BBR_RS11990 0.74 -3.1
442,386 - BBR_RS11990 0.74 -1.5
442,387 + BBR_RS11990 0.74 -2.4
442,388 - BBR_RS11990 0.74 -0.7
442,404 + BBR_RS11990 0.76 -3.3
442,456 - BBR_RS11990 0.81 -2.1
442,490 + BBR_RS11990 0.84 -2.1
442,493 + BBR_RS11990 0.84 -1.1
442,497 + BBR_RS11990 0.85 -2.7
442,497 + BBR_RS11990 0.85 -2.1
442,498 + BBR_RS11990 0.85 -3.5
442,501 - BBR_RS11990 0.85 -3.0
442,501 - BBR_RS11990 0.85 -1.7
442,505 - BBR_RS11990 0.86 -0.1
442,519 - BBR_RS11990 0.87 -2.0
442,519 - BBR_RS11990 0.87 -0.1
442,554 + -0.6
442,562 - +0.2
442,562 - -2.6
442,592 - -0.8
442,637 + +1.0
442,637 + +0.4
442,642 + +0.5
442,645 - -1.7
442,655 + -0.7
442,660 + -1.0
442,660 + +1.6
442,759 + -2.5
442,759 + -1.4
442,778 - -0.2
442,809 + -1.9
442,816 - +2.1
442,816 - -0.3
442,816 - +1.2
442,816 - +0.3
442,817 - -2.4
442,819 + +1.2
442,820 + +1.3
442,827 - -0.4
442,843 + +2.4
442,853 + -0.5
442,853 + +0.3
442,867 + -0.1
442,883 + +0.7

Or see this region's nucleotide sequence