Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19440

Experiment: cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
2,142,746	+		BBR_RS19435	0.35	-2.5
2,142,746	+		BBR_RS19435	0.35	-2.1
2,142,829	-		BBR_RS19435	0.42	-1.0
2,142,887	+		BBR_RS19435	0.47	-3.5
2,142,895	-		BBR_RS19435	0.47	-1.3
2,143,004	+		BBR_RS19435	0.56	-1.1
2,143,038	-		BBR_RS19435	0.59	-0.9
2,143,142	+		BBR_RS19435	0.68	-2.7
2,143,431	-				-0.5
2,143,455	+				-3.2
2,143,499	-				-1.5
2,143,499	-				-0.7
2,143,499	-				-0.6
2,143,529	+				-3.1
2,143,537	-				-0.5
2,143,549	+				-0.5
2,143,549	+				+0.1
2,143,557	-				+0.7
2,143,557	-				+0.2
2,143,557	-				-0.6
2,143,563	+				+1.4
2,143,563	+				-0.9
2,143,571	-				-2.7
2,143,571	-				-0.1
2,143,571	-				+0.3
2,143,571	-				+2.6
2,143,575	+				+0.1
2,143,586	-				+0.4
2,143,610	+				+0.4
2,143,618	+				-1.3
2,143,620	+				-0.3
2,143,626	-				+0.2
2,143,626	-				+0.6
2,143,626	-				-1.2
2,143,626	-				+0.6
2,143,631	+				+0.3
2,143,641	+				+2.8
2,143,649	-				+0.2
2,143,649	-				+0.5
2,143,649	-				-0.4
2,143,649	-				+0.2
2,143,656	+				-0.3
2,143,666	+				-0.9
2,143,688	+				-1.8
2,143,696	-				+1.5
2,143,719	-				-0.7
2,143,719	-				+0.5
2,143,719	-				-0.7
2,143,722	-				+0.2
2,143,725	+				+0.6
2,143,727	-				-0.9
2,143,729	-				-1.4
2,143,733	-				+2.4
2,143,738	-				+0.1
2,143,751	-				+0.2
2,143,777	-				+1.3
2,143,777	-				+0.7
2,143,786	-				+0.1
2,143,798	-		BBR_RS19440	0.10	+0.1
2,143,853	+		BBR_RS19440	0.14	+0.6
2,143,866	-		BBR_RS19440	0.16	-0.3
2,143,866	-		BBR_RS19440	0.16	-0.1
2,143,871	-		BBR_RS19440	0.16	+1.0
2,143,877	+		BBR_RS19440	0.16	-0.3
2,143,878	-		BBR_RS19440	0.16	+3.1
2,143,905	+		BBR_RS19440	0.19	-1.3
2,143,915	+		BBR_RS19440	0.19	-0.1
2,143,918	-		BBR_RS19440	0.20	-0.6
2,143,966	-		BBR_RS19440	0.23	+0.7
2,144,031	+		BBR_RS19440	0.29	-1.1
2,144,041	-		BBR_RS19440	0.29	-1.5
2,144,041	-		BBR_RS19440	0.29	-0.4
2,144,059	+		BBR_RS19440	0.31	+0.3
2,144,059	+		BBR_RS19440	0.31	+0.8
2,144,059	+		BBR_RS19440	0.31	+1.8
2,144,059	+		BBR_RS19440	0.31	+0.6
2,144,059	+		BBR_RS19440	0.31	+3.2
2,144,059	+		BBR_RS19440	0.31	-0.1
2,144,059	+		BBR_RS19440	0.31	-0.3
2,144,064	+		BBR_RS19440	0.31	-0.6
2,144,066	+		BBR_RS19440	0.31	-2.4
2,144,067	-		BBR_RS19440	0.31	+0.6
2,144,067	-		BBR_RS19440	0.31	-1.4
2,144,067	-		BBR_RS19440	0.31	+1.0
2,144,067	-		BBR_RS19440	0.31	+1.0
2,144,067	-		BBR_RS19440	0.31	+0.0
2,144,067	-		BBR_RS19440	0.31	+0.7
2,144,067	-		BBR_RS19440	0.31	+0.7
2,144,067	-		BBR_RS19440	0.31	-0.5
2,144,067	-		BBR_RS19440	0.31	+0.3
2,144,067	-		BBR_RS19440	0.31	-1.3
2,144,074	-		BBR_RS19440	0.32	+1.6
2,144,096	-		BBR_RS19440	0.34	+0.5
2,144,111	-		BBR_RS19440	0.35	-0.7
2,144,122	-		BBR_RS19440	0.36	-0.3
2,144,125	-		BBR_RS19440	0.36	-0.6
2,144,125	-		BBR_RS19440	0.36	+0.3
2,144,155	+		BBR_RS19440	0.38	-2.1
2,144,156	-		BBR_RS19440	0.38	-0.5
2,144,163	-		BBR_RS19440	0.39	+2.2
2,144,171	-		BBR_RS19440	0.40	+0.7
2,144,178	-		BBR_RS19440	0.40	+1.4
2,144,180	+		BBR_RS19440	0.40	-0.0
2,144,180	+		BBR_RS19440	0.40	-0.3
2,144,180	+		BBR_RS19440	0.40	+0.4
2,144,180	+		BBR_RS19440	0.40	-1.4
2,144,180	+		BBR_RS19440	0.40	+0.6
2,144,182	+		BBR_RS19440	0.41	-0.1
2,144,182	+		BBR_RS19440	0.41	-0.3
2,144,182	+		BBR_RS19440	0.41	+0.4
2,144,188	-		BBR_RS19440	0.41	+0.2
2,144,188	-		BBR_RS19440	0.41	+0.2
2,144,188	-		BBR_RS19440	0.41	-0.4
2,144,188	-		BBR_RS19440	0.41	-0.4
2,144,188	-		BBR_RS19440	0.41	+1.3
2,144,190	-		BBR_RS19440	0.41	+0.0
2,144,192	+		BBR_RS19440	0.41	-0.3
2,144,192	+		BBR_RS19440	0.41	+1.2
2,144,200	-		BBR_RS19440	0.42	+0.0
2,144,200	-		BBR_RS19440	0.42	+1.5
2,144,200	-		BBR_RS19440	0.42	+3.1
2,144,200	-		BBR_RS19440	0.42	+1.1
2,144,216	-		BBR_RS19440	0.43	+0.4
2,144,216	-		BBR_RS19440	0.43	-0.3
2,144,238	+		BBR_RS19440	0.45	+0.2
2,144,238	+		BBR_RS19440	0.45	-0.2
2,144,241	-		BBR_RS19440	0.45	-0.3
2,144,293	-		BBR_RS19440	0.49	-0.5
2,144,293	-		BBR_RS19440	0.49	+0.4
2,144,342	+		BBR_RS19440	0.53	-0.4
2,144,342	+		BBR_RS19440	0.53	+2.9
2,144,349	-		BBR_RS19440	0.54	-0.7
2,144,349	-		BBR_RS19440	0.54	+0.0
2,144,384	-		BBR_RS19440	0.57	-0.2
2,144,403	-		BBR_RS19440	0.58	-0.8
2,144,409	+		BBR_RS19440	0.59	+0.1
2,144,409	+		BBR_RS19440	0.59	-2.9
2,144,409	+		BBR_RS19440	0.59	-1.3
2,144,409	+		BBR_RS19440	0.59	-3.1
2,144,417	-		BBR_RS19440	0.59	+0.3
2,144,417	-		BBR_RS19440	0.59	-0.5
2,144,417	-		BBR_RS19440	0.59	+0.2
2,144,417	-		BBR_RS19440	0.59	-0.3
2,144,419	-		BBR_RS19440	0.59	+0.9
2,144,432	-		BBR_RS19440	0.60	+1.0
2,144,443	-		BBR_RS19440	0.61	+0.5
2,144,443	-		BBR_RS19440	0.61	+2.7
2,144,443	-		BBR_RS19440	0.61	+3.3
2,144,450	+		BBR_RS19440	0.62	-0.4
2,144,472	+		BBR_RS19440	0.63	-0.0
2,144,496	+		BBR_RS19440	0.65	-0.1
2,144,503	+		BBR_RS19440	0.66	-0.0
2,144,511	+		BBR_RS19440	0.67	+1.3
2,144,511	-		BBR_RS19440	0.67	+0.4
2,144,511	-		BBR_RS19440	0.67	+0.4
2,144,516	+		BBR_RS19440	0.67	+0.4
2,144,527	+		BBR_RS19440	0.68	+3.5
2,144,530	-		BBR_RS19440	0.68	-0.1
2,144,536	+		BBR_RS19440	0.69	-0.3
2,144,542	-		BBR_RS19440	0.69	+0.7
2,144,552	-		BBR_RS19440	0.70	+0.8
2,144,554	+		BBR_RS19440	0.70	-1.4
2,144,584	+		BBR_RS19440	0.72	-0.8
2,144,584	-		BBR_RS19440	0.72	+1.1
2,144,598	-		BBR_RS19440	0.73	+0.1
2,144,607	+		BBR_RS19440	0.74	+0.7
2,144,607	+		BBR_RS19440	0.74	+0.1
2,144,641	-		BBR_RS19440	0.77	+2.9
2,144,669	+		BBR_RS19440	0.79	+1.0
2,144,674	+		BBR_RS19440	0.79	-0.1
2,144,674	+		BBR_RS19440	0.79	-0.2
2,144,674	+		BBR_RS19440	0.79	+0.6
2,144,688	+		BBR_RS19440	0.81	-0.1
2,144,698	-		BBR_RS19440	0.81	-1.1
2,144,700	+		BBR_RS19440	0.82	+0.4
2,144,717	-		BBR_RS19440	0.83	+0.4
2,144,719	+		BBR_RS19440	0.83	-0.2
2,144,723	+		BBR_RS19440	0.83	+1.8
2,144,737	-		BBR_RS19440	0.84	-0.3
2,144,760	+		BBR_RS19440	0.86	-0.8
2,144,764	+		BBR_RS19440	0.87	+0.8
2,144,772	-		BBR_RS19440	0.87	-0.1
2,144,775	+		BBR_RS19440	0.87	-0.4
2,144,775	+		BBR_RS19440	0.87	-1.5
2,144,784	+		BBR_RS19440	0.88	+0.9
2,144,784	+		BBR_RS19440	0.88	+3.2
2,144,793	+		BBR_RS19440	0.89	+3.4
2,144,795	+		BBR_RS19440	0.89	-0.1
2,144,795	+		BBR_RS19440	0.89	+0.2
2,144,801	-		BBR_RS19440	0.90	+0.3
2,144,803	-		BBR_RS19440	0.90	+0.4
2,144,821	+				+0.5
2,144,828	+				-0.7
2,144,831	+				-0.0
2,144,831	+				-0.1
2,144,831	+				-0.7
2,144,831	+				-1.8
2,144,831	+				-0.8
2,144,831	+				+0.5
2,144,831	+				+0.5
2,144,839	-				-0.5
2,144,839	-				-0.8
2,144,839	-				-1.3
2,144,839	-				+0.1
2,144,844	-				-0.1
2,144,885	+				+0.4
2,144,900	-				+3.6
2,144,928	+				-0.2
2,144,944	-				-1.6
2,144,945	+				+0.1
2,144,950	+				+0.1
2,144,950	+				+0.5
2,144,953	-				+1.1
2,144,953	-				-1.3
2,144,953	-				+1.0
2,144,953	-				-0.0
2,144,956	+				-0.0
2,144,956	+				-0.6
2,144,964	+				-0.0
2,144,964	-				+0.3
2,144,964	-				-0.0
2,144,964	-				+0.3
2,144,979	+				-0.5
2,144,982	-				+0.4
2,144,986	+				-0.5
2,144,987	-				-0.1
2,145,000	+				-2.2
2,145,002	+				-0.5
2,145,005	+				+0.7
2,145,008	-				+0.3
2,145,008	-				+0.3
2,145,008	-				+0.1
2,145,010	-				-0.2
2,145,010	-				+1.7
2,145,020	-				-2.3
2,145,026	+				-0.1
2,145,029	-				+0.6
2,145,031	+				+0.4
2,145,031	+				+0.1
2,145,034	-				+1.1
2,145,034	-				-3.0
2,145,034	-				-1.1
2,145,036	+				+2.4
2,145,036	+				+0.5
2,145,036	+				-0.5
2,145,036	+				+0.2
2,145,036	+				+2.3
2,145,044	-				+0.8
2,145,044	-				+0.0
2,145,060	-				+0.2
2,145,062	-				-0.9
2,145,062	-				-0.8
2,145,067	+				+2.5
2,145,107	-				+0.0
2,145,118	+				+0.6
2,145,120	+				-0.0
2,145,153	+		BBR_RS19445	0.11	-0.9
2,145,160	+		BBR_RS19445	0.12	-0.6
2,145,160	+		BBR_RS19445	0.12	+0.9
2,145,160	+		BBR_RS19445	0.12	-0.3
2,145,160	+		BBR_RS19445	0.12	+1.1
2,145,160	+		BBR_RS19445	0.12	-0.5
2,145,160	+		BBR_RS19445	0.12	+1.2
2,145,160	+		BBR_RS19445	0.12	+0.0
2,145,160	+		BBR_RS19445	0.12	+0.1
2,145,160	+		BBR_RS19445	0.12	-1.2
2,145,168	-		BBR_RS19445	0.12	-0.9
2,145,168	-		BBR_RS19445	0.12	-0.2
2,145,168	-		BBR_RS19445	0.12	+2.5
2,145,168	-		BBR_RS19445	0.12	-0.1
2,145,168	-		BBR_RS19445	0.12	+0.7
2,145,168	-		BBR_RS19445	0.12	+2.4
2,145,168	-		BBR_RS19445	0.12	-1.9
2,145,168	-		BBR_RS19445	0.12	-2.1
2,145,168	-		BBR_RS19445	0.12	-1.0
2,145,168	-		BBR_RS19445	0.12	+0.8
2,145,168	-		BBR_RS19445	0.12	+0.4
2,145,182	+		BBR_RS19445	0.14	+0.5
2,145,225	+		BBR_RS19445	0.17	+0.5
2,145,233	-		BBR_RS19445	0.18	+0.3
2,145,267	+		BBR_RS19445	0.21	+0.2
2,145,271	+		BBR_RS19445	0.21	-0.8
2,145,271	+		BBR_RS19445	0.21	+0.1
2,145,277	+		BBR_RS19445	0.22	+0.1
2,145,288	+		BBR_RS19445	0.23	-0.3
2,145,292	+		BBR_RS19445	0.23	-0.1
2,145,297	+		BBR_RS19445	0.24	-0.3
2,145,305	-		BBR_RS19445	0.24	-0.3
2,145,320	-		BBR_RS19445	0.26	+0.1
2,145,332	-		BBR_RS19445	0.27	+0.1
2,145,334	-		BBR_RS19445	0.27	+0.4
2,145,347	+		BBR_RS19445	0.28	+0.2
2,145,355	+		BBR_RS19445	0.29	+0.4
2,145,355	-		BBR_RS19445	0.29	-0.3
2,145,356	+		BBR_RS19445	0.29	+2.3
2,145,356	+		BBR_RS19445	0.29	-1.1
2,145,364	-		BBR_RS19445	0.30	-0.2
2,145,364	-		BBR_RS19445	0.30	-0.5
2,145,366	+		BBR_RS19445	0.30	+1.4
2,145,366	+		BBR_RS19445	0.30	+1.7
2,145,375	-		BBR_RS19445	0.31	+0.2
2,145,381	-		BBR_RS19445	0.31	+0.5
2,145,396	+		BBR_RS19445	0.32	+1.3
2,145,417	+		BBR_RS19445	0.34	+0.3
2,145,432	-		BBR_RS19445	0.36	+0.3
2,145,465	-		BBR_RS19445	0.39	-1.0
2,145,467	+		BBR_RS19445	0.39	-0.1
2,145,475	-		BBR_RS19445	0.39	-1.3
2,145,475	-		BBR_RS19445	0.39	+0.6
2,145,520	+		BBR_RS19445	0.43	+0.2
2,145,530	-		BBR_RS19445	0.44	+3.3
2,145,530	-		BBR_RS19445	0.44	+0.9
2,145,531	+		BBR_RS19445	0.44	-0.8
2,145,540	-		BBR_RS19445	0.45	-0.9
2,145,540	-		BBR_RS19445	0.45	+0.1
2,145,548	+		BBR_RS19445	0.46	+1.3
2,145,553	+		BBR_RS19445	0.46	+0.2
2,145,556	+		BBR_RS19445	0.47	+1.9
2,145,558	+		BBR_RS19445	0.47	+3.2
2,145,571	+		BBR_RS19445	0.48	+0.7
2,145,588	-		BBR_RS19445	0.49	-0.9
2,145,588	-		BBR_RS19445	0.49	-0.3
2,145,588	-		BBR_RS19445	0.49	-0.3
2,145,594	+		BBR_RS19445	0.50	-0.3
2,145,594	+		BBR_RS19445	0.50	+0.1
2,145,596	+		BBR_RS19445	0.50	-2.1
2,145,596	+		BBR_RS19445	0.50	-0.6
2,145,596	+		BBR_RS19445	0.50	-1.2
2,145,596	+		BBR_RS19445	0.50	-0.4
2,145,596	+		BBR_RS19445	0.50	-0.1
2,145,598	+		BBR_RS19445	0.50	+0.8
2,145,598	+		BBR_RS19445	0.50	+1.9
2,145,599	+		BBR_RS19445	0.50	+0.1
2,145,601	+		BBR_RS19445	0.51	-0.2
2,145,602	-		BBR_RS19445	0.51	+0.3
2,145,607	-		BBR_RS19445	0.51	-0.3
2,145,607	-		BBR_RS19445	0.51	+1.3
2,145,607	-		BBR_RS19445	0.51	+1.4
2,145,609	-		BBR_RS19445	0.51	+0.1
2,145,609	-		BBR_RS19445	0.51	+1.6
2,145,609	-		BBR_RS19445	0.51	-0.5
2,145,609	-		BBR_RS19445	0.51	-0.3
2,145,628	+		BBR_RS19445	0.53	-0.1
2,145,636	+		BBR_RS19445	0.54	-0.1
2,145,654	-		BBR_RS19445	0.55	-1.2
2,145,660	+		BBR_RS19445	0.56	-0.2
2,145,662	+		BBR_RS19445	0.56	-0.9
2,145,741	+		BBR_RS19445	0.63	-1.6
2,145,743	-		BBR_RS19445	0.63	-1.7
2,145,749	-		BBR_RS19445	0.64	-0.2
2,145,772	-		BBR_RS19445	0.66	+0.3
2,145,772	-		BBR_RS19445	0.66	+0.5
2,145,784	+		BBR_RS19445	0.67	+1.1
2,145,784	+		BBR_RS19445	0.67	+1.2
2,145,784	+		BBR_RS19445	0.67	-1.3
2,145,784	+		BBR_RS19445	0.67	-0.5
2,145,789	+		BBR_RS19445	0.67	-0.8
2,145,792	-		BBR_RS19445	0.67	-3.1
2,145,792	-		BBR_RS19445	0.67	+0.2
2,145,817	+		BBR_RS19445	0.70	+2.4
2,145,817	+		BBR_RS19445	0.70	+0.4
2,145,825	-		BBR_RS19445	0.70	-0.9
2,145,826	-		BBR_RS19445	0.70	-1.8
2,145,834	+		BBR_RS19445	0.71	-0.8
2,145,834	+		BBR_RS19445	0.71	+0.7
2,145,850	+		BBR_RS19445	0.72	-0.1
2,145,850	+		BBR_RS19445	0.72	+0.2
2,145,850	+		BBR_RS19445	0.72	+3.0
2,145,861	+		BBR_RS19445	0.73	+0.7
2,145,868	-		BBR_RS19445	0.74	-0.1
2,145,868	-		BBR_RS19445	0.74	+0.7
2,145,883	+		BBR_RS19445	0.75	-0.6
2,145,883	+		BBR_RS19445	0.75	-0.6
2,145,891	-		BBR_RS19445	0.76	+1.4
2,145,907	-		BBR_RS19445	0.78	-2.8
2,145,912	-		BBR_RS19445	0.78	+0.7
2,145,915	-		BBR_RS19445	0.78	-0.8