Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18060

Experiment: cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
1,840,634	-		BBR_RS18050	0.85	-1.1
1,840,707	+				-2.7
1,840,717	+				+0.5
1,840,725	-				-2.2
1,840,771	-				+0.4
1,840,795	-				+0.2
1,840,801	+				-0.8
1,840,801	+				+1.7
1,840,801	+				-0.3
1,840,809	-				-1.8
1,840,809	-				-2.3
1,840,851	-				+3.0
1,840,853	+				-0.1
1,840,861	-				+2.8
1,840,861	-				-0.0
1,840,877	+				-0.9
1,840,879	+				-0.4
1,840,927	+				-0.2
1,840,964	-		BBR_RS18055	0.14	-0.3
1,840,979	-		BBR_RS18055	0.16	+0.5
1,840,984	-		BBR_RS18055	0.16	+1.1
1,840,984	-		BBR_RS18055	0.16	+0.1
1,841,005	-		BBR_RS18055	0.19	-0.1
1,841,082	+		BBR_RS18055	0.30	-0.8
1,841,085	+		BBR_RS18055	0.31	+0.5
1,841,085	+		BBR_RS18055	0.31	+0.8
1,841,120	+		BBR_RS18055	0.36	-0.2
1,841,128	-		BBR_RS18055	0.37	-1.3
1,841,150	+		BBR_RS18055	0.40	-0.5
1,841,163	-		BBR_RS18055	0.42	+1.5
1,841,168	-		BBR_RS18055	0.43	+0.5
1,841,216	+		BBR_RS18055	0.49	-1.5
1,841,216	+		BBR_RS18055	0.49	-0.5
1,841,217	-		BBR_RS18055	0.50	+2.3
1,841,269	+		BBR_RS18055	0.57	-0.6
1,841,277	+		BBR_RS18055	0.58	-1.0
1,841,286	-		BBR_RS18055	0.59	-0.3
1,841,286	-		BBR_RS18055	0.59	+0.3
1,841,290	+		BBR_RS18055	0.60	-0.4
1,841,296	-		BBR_RS18055	0.61	+1.0
1,841,306	+		BBR_RS18055	0.62	-0.4
1,841,322	-		BBR_RS18055	0.64	-0.9
1,841,324	+		BBR_RS18055	0.65	+0.5
1,841,337	+		BBR_RS18055	0.67	-2.2
1,841,337	+		BBR_RS18055	0.67	+0.0
1,841,349	-		BBR_RS18055	0.68	+0.6
1,841,355	-		BBR_RS18055	0.69	+0.7
1,841,370	+		BBR_RS18055	0.71	+0.9
1,841,370	+		BBR_RS18055	0.71	+0.3
1,841,370	+		BBR_RS18055	0.71	+0.1
1,841,378	-		BBR_RS18055	0.72	+3.0
1,841,378	-		BBR_RS18055	0.72	+0.1
1,841,378	-		BBR_RS18055	0.72	+0.5
1,841,380	+		BBR_RS18055	0.73	+2.9
1,841,388	-		BBR_RS18055	0.74	-0.6
1,841,389	+		BBR_RS18055	0.74	+0.3
1,841,389	+		BBR_RS18055	0.74	+0.4
1,841,438	+		BBR_RS18055	0.81	-0.8
1,841,446	-		BBR_RS18055	0.82	+0.4
1,841,451	+		BBR_RS18055	0.83	-0.6
1,841,451	+		BBR_RS18055	0.83	+0.5
1,841,488	+		BBR_RS18055	0.88	+0.3
1,841,503	+				-1.2
1,841,504	-				+0.3
1,841,511	-				+1.3
1,841,511	-				+0.4
1,841,511	-				-0.9
1,841,511	-				-0.0
1,841,511	-				-0.8
1,841,511	-				+1.9
1,841,511	-				+0.7
1,841,624	+				-0.2
1,841,626	-				+0.1
1,841,666	+		BBR_RS18060	0.11	+1.3
1,841,681	+		BBR_RS18060	0.13	-0.0
1,841,689	-		BBR_RS18060	0.14	-0.7
1,841,750	+		BBR_RS18060	0.21	+0.3
1,841,759	-		BBR_RS18060	0.22	-0.7
1,841,763	+		BBR_RS18060	0.22	+0.6
1,841,763	+		BBR_RS18060	0.22	+1.0
1,841,771	-		BBR_RS18060	0.23	+0.0
1,841,771	-		BBR_RS18060	0.23	+0.9
1,841,796	-		BBR_RS18060	0.26	-0.0
1,841,835	+		BBR_RS18060	0.30	+0.1
1,841,845	+		BBR_RS18060	0.32	-1.1
1,841,872	+		BBR_RS18060	0.35	-0.9
1,841,878	-		BBR_RS18060	0.35	-1.4
1,841,878	-		BBR_RS18060	0.35	+0.1
1,841,880	-		BBR_RS18060	0.36	+0.3
1,841,915	-		BBR_RS18060	0.40	-0.9
1,841,946	-		BBR_RS18060	0.43	-0.8
1,842,019	+		BBR_RS18060	0.52	+2.0
1,842,046	-		BBR_RS18060	0.55	+0.3
1,842,122	+		BBR_RS18060	0.64	+0.4
1,842,130	+		BBR_RS18060	0.65	+0.1
1,842,130	+		BBR_RS18060	0.65	-0.8
1,842,137	+		BBR_RS18060	0.65	+3.5
1,842,156	+		BBR_RS18060	0.68	+3.4
1,842,163	+		BBR_RS18060	0.68	-0.4
1,842,195	+		BBR_RS18060	0.72	+2.8
1,842,198	+		BBR_RS18060	0.72	-0.6
1,842,257	+		BBR_RS18060	0.79	+2.1
1,842,257	+		BBR_RS18060	0.79	-1.1
1,842,257	+		BBR_RS18060	0.79	+0.8
1,842,280	+		BBR_RS18060	0.82	+0.6
1,842,305	+		BBR_RS18060	0.85	-0.4
1,842,310	-		BBR_RS18060	0.85	+0.4
1,842,316	+		BBR_RS18060	0.86	-0.1
1,842,316	+		BBR_RS18060	0.86	-1.4
1,842,320	+		BBR_RS18060	0.87	-0.3
1,842,324	-		BBR_RS18060	0.87	+0.3
1,842,346	-		BBR_RS18060	0.90	-0.1
1,842,362	+				+0.6
1,842,368	+				-0.1
1,842,378	-				-0.3
1,842,383	-				+1.4
1,842,385	-				+0.5
1,842,387	-				-1.8
1,842,412	-				+0.3
1,842,452	+				+0.9
1,842,499	+				+0.5
1,842,527	+				+0.3
1,842,552	-		BBR_RS18065	0.11	+0.3
1,842,552	-		BBR_RS18065	0.11	-0.2
1,842,552	-		BBR_RS18065	0.11	-0.7
1,842,554	-		BBR_RS18065	0.11	+0.7
1,842,563	+		BBR_RS18065	0.12	-0.8
1,842,569	-		BBR_RS18065	0.13	-0.4
1,842,589	-		BBR_RS18065	0.14	+0.3
1,842,636	+		BBR_RS18065	0.19	+0.1
1,842,657	-		BBR_RS18065	0.21	+1.1
1,842,666	-		BBR_RS18065	0.21	-0.5
1,842,705	+		BBR_RS18065	0.25	-0.8
1,842,718	-		BBR_RS18065	0.26	+0.0
1,842,777	-		BBR_RS18065	0.32	-0.4
1,842,778	-		BBR_RS18065	0.32	-0.4
1,842,778	-		BBR_RS18065	0.32	-0.3
1,842,846	+		BBR_RS18065	0.38	+2.8
1,842,854	+		BBR_RS18065	0.39	+1.9
1,842,854	-		BBR_RS18065	0.39	+0.4
1,842,861	-		BBR_RS18065	0.39	-1.4
1,842,871	-		BBR_RS18065	0.40	+0.4
1,842,875	+		BBR_RS18065	0.41	+0.1
1,842,935	-		BBR_RS18065	0.46	-0.2
1,842,948	+		BBR_RS18065	0.47	-0.1
1,842,956	-		BBR_RS18065	0.48	+0.6
1,842,966	+		BBR_RS18065	0.49	+0.6
1,842,984	+		BBR_RS18065	0.51	+1.1
1,842,998	+		BBR_RS18065	0.52	-0.7
1,842,998	+		BBR_RS18065	0.52	-0.7
1,842,999	-		BBR_RS18065	0.52	+0.7
1,842,999	-		BBR_RS18065	0.52	-0.0
1,842,999	-		BBR_RS18065	0.52	-1.7
1,843,010	+		BBR_RS18065	0.53	-0.6
1,843,018	-		BBR_RS18065	0.54	-0.3
1,843,025	+		BBR_RS18065	0.54	+2.2
1,843,028	-		BBR_RS18065	0.55	+0.5
1,843,028	-		BBR_RS18065	0.55	+0.5
1,843,042	+		BBR_RS18065	0.56	+1.6
1,843,042	+		BBR_RS18065	0.56	+0.3
1,843,055	-		BBR_RS18065	0.57	+0.6
1,843,084	-		BBR_RS18065	0.60	-0.4
1,843,118	-		BBR_RS18065	0.63	-0.0
1,843,167	-		BBR_RS18065	0.67	+2.0
1,843,170	-		BBR_RS18065	0.68	+1.1
1,843,185	+		BBR_RS18065	0.69	-1.4
1,843,193	-		BBR_RS18065	0.70	+0.1
1,843,195	+		BBR_RS18065	0.70	-2.5
1,843,221	-		BBR_RS18065	0.72	-1.6
1,843,232	+		BBR_RS18065	0.73	-0.5
1,843,240	-		BBR_RS18065	0.74	+1.5
1,843,240	-		BBR_RS18065	0.74	-2.2
1,843,240	-		BBR_RS18065	0.74	-0.2
1,843,240	-		BBR_RS18065	0.74	+1.0
1,843,306	-		BBR_RS18065	0.80	+0.2
1,843,309	+		BBR_RS18065	0.81	-0.1
1,843,314	+		BBR_RS18065	0.81	-1.1
1,843,345	-		BBR_RS18065	0.84	+0.1
1,843,357	-		BBR_RS18065	0.85	-0.2
1,843,371	-		BBR_RS18065	0.86	+0.4
1,843,387	+		BBR_RS18065	0.88	+0.8
1,843,408	-		BBR_RS18065	0.90	-0.5
1,843,411	-		BBR_RS18065	0.90	+1.1
1,843,426	+				-0.7
1,843,429	-				-0.7
1,843,434	-				-0.3