Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17420

Experiment: cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
1,685,882	+		BBR_RS17410	0.42	-0.1
1,685,882	+		BBR_RS17410	0.42	-1.1
1,685,949	-		BBR_RS17410	0.47	+0.1
1,685,969	-		BBR_RS17410	0.48	-0.5
1,686,034	+		BBR_RS17410	0.53	+1.0
1,686,037	-		BBR_RS17410	0.53	-0.6
1,686,056	-		BBR_RS17410	0.54	+0.2
1,686,136	-		BBR_RS17410	0.60	+0.3
1,686,146	-		BBR_RS17410	0.61	+1.3
1,686,194	-		BBR_RS17410	0.64	+2.6
1,686,221	-		BBR_RS17410	0.66	-0.8
1,686,244	+		BBR_RS17410	0.68	+0.7
1,686,252	-		BBR_RS17410	0.69	+0.3
1,686,258	-		BBR_RS17410	0.69	-0.1
1,686,268	+		BBR_RS17410	0.70	+1.9
1,686,268	+		BBR_RS17410	0.70	+0.3
1,686,268	+		BBR_RS17410	0.70	-0.2
1,686,268	+		BBR_RS17410	0.70	+0.8
1,686,268	+		BBR_RS17410	0.70	-0.4
1,686,275	-		BBR_RS17410	0.70	-0.1
1,686,276	-		BBR_RS17410	0.70	+0.6
1,686,276	-		BBR_RS17410	0.70	+1.9
1,686,276	-		BBR_RS17410	0.70	+0.2
1,686,308	+		BBR_RS17410	0.73	-0.3
1,686,331	-		BBR_RS17410	0.74	-3.7
1,686,376	+		BBR_RS17410	0.78	+0.4
1,686,458	-		BBR_RS17410	0.84	+0.5
1,686,460	-		BBR_RS17410	0.84	-0.3
1,686,460	-		BBR_RS17410	0.84	-0.5
1,686,544	+		BBR_RS17410	0.90	-0.3
1,686,556	+				+2.6
1,686,570	-				+0.5
1,686,598	-				+2.6
1,686,606	-				+0.0
1,686,619	+				+2.6
1,686,619	+				-0.3
1,686,627	-				-0.6
1,686,632	-				+2.4
1,686,703	+				+1.4
1,686,777	+		BBR_RS17415	0.43	+0.2
1,686,784	-		BBR_RS17415	0.46	+3.2
1,686,820	+		BBR_RS17415	0.63	+3.1
1,686,933	-				-0.3
1,686,933	-				+1.0
1,686,938	-				-1.0
1,686,952	+				+0.7
1,686,952	+				-0.7
1,686,975	+				+2.8
1,686,989	+				-0.3
1,686,989	+				+1.5
1,686,997	+				+1.0
1,687,011	-				+0.8
1,687,013	+				-1.1
1,687,048	-		BBR_RS17420	0.12	-0.2
1,687,099	+		BBR_RS17420	0.15	-0.4
1,687,107	-		BBR_RS17420	0.16	+0.3
1,687,120	-		BBR_RS17420	0.17	-1.0
1,687,142	+		BBR_RS17420	0.18	+0.1
1,687,150	+		BBR_RS17420	0.18	-1.8
1,687,150	-		BBR_RS17420	0.18	+0.7
1,687,150	-		BBR_RS17420	0.18	-0.3
1,687,150	-		BBR_RS17420	0.18	+0.1
1,687,178	-		BBR_RS17420	0.20	-1.2
1,687,182	-		BBR_RS17420	0.21	-0.9
1,687,191	+		BBR_RS17420	0.21	+2.3
1,687,238	-		BBR_RS17420	0.24	+0.8
1,687,268	+		BBR_RS17420	0.26	-1.3
1,687,276	-		BBR_RS17420	0.27	-0.4
1,687,276	-		BBR_RS17420	0.27	-0.6
1,687,283	+		BBR_RS17420	0.27	-0.2
1,687,283	+		BBR_RS17420	0.27	-0.7
1,687,283	+		BBR_RS17420	0.27	-0.4
1,687,283	+		BBR_RS17420	0.27	+3.0
1,687,291	-		BBR_RS17420	0.28	+0.6
1,687,291	-		BBR_RS17420	0.28	+0.0
1,687,291	-		BBR_RS17420	0.28	+0.8
1,687,291	-		BBR_RS17420	0.28	+0.9
1,687,291	-		BBR_RS17420	0.28	+0.5
1,687,291	-		BBR_RS17420	0.28	-2.2
1,687,291	-		BBR_RS17420	0.28	+0.0
1,687,291	-		BBR_RS17420	0.28	-2.5
1,687,293	+		BBR_RS17420	0.28	+0.8
1,687,301	-		BBR_RS17420	0.29	-0.0
1,687,301	-		BBR_RS17420	0.29	-0.1
1,687,332	-		BBR_RS17420	0.31	-0.4
1,687,397	-		BBR_RS17420	0.35	-1.2
1,687,411	+		BBR_RS17420	0.36	+0.8
1,687,428	+		BBR_RS17420	0.37	+2.1
1,687,466	+		BBR_RS17420	0.40	+0.7
1,687,471	+		BBR_RS17420	0.40	-0.6
1,687,471	+		BBR_RS17420	0.40	+1.3
1,687,474	-		BBR_RS17420	0.40	+0.1
1,687,498	+		BBR_RS17420	0.42	+0.9
1,687,521	-		BBR_RS17420	0.43	+0.2
1,687,581	+		BBR_RS17420	0.47	+0.1
1,687,588	-		BBR_RS17420	0.48	-1.0
1,687,589	-		BBR_RS17420	0.48	-0.1
1,687,619	-		BBR_RS17420	0.50	+0.9
1,687,644	-		BBR_RS17420	0.51	+0.2
1,687,644	-		BBR_RS17420	0.51	-1.6
1,687,716	-		BBR_RS17420	0.56	+0.3
1,687,765	+		BBR_RS17420	0.59	+0.0
1,687,773	-		BBR_RS17420	0.60	-0.5
1,687,866	-		BBR_RS17420	0.66	+1.0
1,687,876	+		BBR_RS17420	0.67	+0.3
1,687,897	+		BBR_RS17420	0.68	-0.3
1,687,921	+		BBR_RS17420	0.70	-0.3
1,687,935	+		BBR_RS17420	0.71	-1.4
1,687,949	+		BBR_RS17420	0.72	-1.8
1,688,009	-		BBR_RS17420	0.76	+2.9
1,688,047	+		BBR_RS17420	0.78	-1.7
1,688,055	-		BBR_RS17420	0.79	-0.7
1,688,103	+		BBR_RS17420	0.82	+0.9
1,688,111	-		BBR_RS17420	0.82	+0.1
1,688,111	-		BBR_RS17420	0.82	+0.4
1,688,133	+		BBR_RS17420	0.84	+0.1
1,688,143	+		BBR_RS17420	0.85	+1.2
1,688,194	+		BBR_RS17420	0.88	-0.9
1,688,226	-				+0.9
1,688,294	+				+0.2
1,688,309	-				+0.0
1,688,336	-				+1.0
1,688,376	+				+0.3
1,688,376	-				+0.2
1,688,378	-				+1.2
1,688,378	-				+0.2
1,688,380	-				-1.4
1,688,439	-				-0.4
1,688,451	-				+1.0
1,688,482	-				+2.6
1,688,492	-				+0.0
1,688,521	+				+0.4
1,688,521	+				-0.1
1,688,521	+				-1.1
1,688,521	+				-0.9
1,688,521	+				+0.7
1,688,521	+				+0.3
1,688,529	-				+0.3
1,688,529	-				+0.3
1,688,529	-				+0.8
1,688,529	-				-1.3
1,688,531	+				+0.1
1,688,539	-				-2.1
1,688,581	+				-0.1
1,688,606	+				-1.8
1,688,660	+		BBR_RS17425	0.11	-1.2
1,688,683	+		BBR_RS17425	0.13	+0.4
1,688,683	+		BBR_RS17425	0.13	+0.6
1,688,727	-		BBR_RS17425	0.16	+0.8
1,688,747	-		BBR_RS17425	0.17	+0.8
1,688,767	-		BBR_RS17425	0.19	-0.6
1,688,784	+		BBR_RS17425	0.20	-2.0
1,688,812	-		BBR_RS17425	0.22	-1.1
1,688,857	+		BBR_RS17425	0.26	+0.2
1,688,941	+		BBR_RS17425	0.32	+1.9
1,688,957	+		BBR_RS17425	0.33	-0.7
1,688,975	-		BBR_RS17425	0.35	+0.4
1,688,976	-		BBR_RS17425	0.35	-0.0
1,689,033	+		BBR_RS17425	0.39	-0.4
1,689,033	+		BBR_RS17425	0.39	+0.8
1,689,033	+		BBR_RS17425	0.39	-0.8
1,689,035	+		BBR_RS17425	0.39	-2.0
1,689,041	-		BBR_RS17425	0.40	+0.5
1,689,051	-		BBR_RS17425	0.40	-0.1
1,689,099	-		BBR_RS17425	0.44	-0.2
1,689,130	+		BBR_RS17425	0.46	-0.8
1,689,172	+		BBR_RS17425	0.50	-1.0
1,689,203	+		BBR_RS17425	0.52	-0.5
1,689,213	-		BBR_RS17425	0.53	+0.7
1,689,260	-		BBR_RS17425	0.56	-0.3
1,689,273	-		BBR_RS17425	0.57	+1.2
1,689,280	-		BBR_RS17425	0.58	-1.3
1,689,309	+		BBR_RS17425	0.60	-0.4
1,689,317	-		BBR_RS17425	0.60	-3.3
1,689,317	-		BBR_RS17425	0.60	-0.4
1,689,357	-		BBR_RS17425	0.63	+0.7
1,689,357	-		BBR_RS17425	0.63	-1.6
1,689,368	+		BBR_RS17425	0.64	-0.6
1,689,368	+		BBR_RS17425	0.64	-1.2