Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17985

Experiment: cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
1,818,426	+		BBR_RS17975	0.58	+0.4
1,818,428	+		BBR_RS17975	0.58	-0.1
1,818,546	-		BBR_RS17975	0.83	-0.3
1,818,571	+		BBR_RS17975	0.88	-0.0
1,818,577	-		BBR_RS17975	0.89	+0.7
1,818,579	-				-0.5
1,818,607	+				-1.2
1,818,630	+				-0.3
1,818,638	-				+0.1
1,818,638	-				-1.1
1,818,638	-				+0.0
1,818,638	-				+1.2
1,818,731	+				+0.4
1,818,739	-				+0.4
1,818,750	+				-0.8
1,818,750	+				-1.6
1,818,774	-				-0.4
1,818,782	+				+0.5
1,818,791	-				+0.8
1,818,797	+				+0.2
1,818,854	+		BBR_RS17980	0.17	-0.2
1,818,854	+		BBR_RS17980	0.17	-0.3
1,818,862	-		BBR_RS17980	0.18	-0.2
1,818,862	-		BBR_RS17980	0.18	-0.2
1,818,862	-		BBR_RS17980	0.18	-0.3
1,818,862	-		BBR_RS17980	0.18	-0.7
1,818,864	+		BBR_RS17980	0.18	-1.5
1,818,864	+		BBR_RS17980	0.18	-0.7
1,818,864	+		BBR_RS17980	0.18	-0.7
1,818,885	+		BBR_RS17980	0.22	+0.7
1,818,929	+		BBR_RS17980	0.30	+0.1
1,818,937	-		BBR_RS17980	0.31	+1.9
1,818,952	-		BBR_RS17980	0.34	+0.2
1,819,014	-		BBR_RS17980	0.45	-0.1
1,819,020	+		BBR_RS17980	0.46	+1.0
1,819,089	+		BBR_RS17980	0.58	+2.0
1,819,089	+		BBR_RS17980	0.58	+2.0
1,819,143	+		BBR_RS17980	0.68	-0.2
1,819,144	-		BBR_RS17980	0.68	+0.1
1,819,146	+		BBR_RS17980	0.68	+0.2
1,819,159	+		BBR_RS17980	0.71	+0.2
1,819,159	+		BBR_RS17980	0.71	+0.8
1,819,159	+		BBR_RS17980	0.71	-1.0
1,819,179	+		BBR_RS17980	0.74	-0.5
1,819,217	+		BBR_RS17980	0.81	+3.1
1,819,217	+		BBR_RS17980	0.81	+1.5
1,819,237	+		BBR_RS17980	0.85	-0.6
1,819,237	-		BBR_RS17980	0.85	+2.2
1,819,237	-		BBR_RS17980	0.85	+2.4
1,819,258	+		BBR_RS17980	0.88	+0.4
1,819,266	-		BBR_RS17980	0.90	+0.1
1,819,282	+				+0.8
1,819,282	+				+0.8
1,819,282	+				-0.3
1,819,290	-				-0.3
1,819,304	+				-0.3
1,819,327	+				-1.7
1,819,377	+				+1.6
1,819,383	+				-1.6
1,819,394	+				-0.2
1,819,394	+				+0.1
1,819,470	+				-0.1
1,819,470	-				+0.2
1,819,478	-				-0.5
1,819,501	-				+0.9
1,819,518	+				+2.6
1,819,518	+				+2.6
1,819,521	+				-0.8
1,819,524	-				+0.0
1,819,525	+				-0.8
1,819,526	-				-0.3
1,819,534	+				+0.1
1,819,547	-				+1.9
1,819,578	-				-0.1
1,819,578	-				+1.7
1,819,602	-				+1.1
1,819,614	-				+1.1
1,819,629	+				-0.1
1,819,631	-				-0.3
1,819,634	+				+0.7
1,819,635	+				+0.7
1,819,635	+				+0.4
1,819,635	+				+2.2
1,819,642	-				+0.3
1,819,648	-				+0.2
1,819,740	+		BBR_RS17985	0.10	+0.4
1,819,747	+		BBR_RS17985	0.10	-0.9
1,819,755	-		BBR_RS17985	0.10	-1.4
1,819,755	-		BBR_RS17985	0.10	-0.3
1,819,808	+		BBR_RS17985	0.12	+1.8
1,819,811	-		BBR_RS17985	0.12	+0.3
1,819,811	-		BBR_RS17985	0.12	-0.3
1,819,811	-		BBR_RS17985	0.12	+0.4
1,819,838	+		BBR_RS17985	0.13	+0.1
1,819,848	+		BBR_RS17985	0.13	-0.2
1,819,848	+		BBR_RS17985	0.13	+2.6
1,819,848	+		BBR_RS17985	0.13	-0.1
1,819,872	+		BBR_RS17985	0.13	+0.1
1,819,885	+		BBR_RS17985	0.14	+0.1
1,819,897	-		BBR_RS17985	0.14	-0.3
1,819,922	-		BBR_RS17985	0.15	+0.5
1,819,929	+		BBR_RS17985	0.15	-0.5
1,819,934	+		BBR_RS17985	0.15	+1.2
1,819,939	+		BBR_RS17985	0.15	+0.8
1,819,944	+		BBR_RS17985	0.15	-0.5
1,819,947	-		BBR_RS17985	0.15	+0.6
1,819,948	-		BBR_RS17985	0.15	+0.8
1,819,952	-		BBR_RS17985	0.15	-0.4
1,819,952	-		BBR_RS17985	0.15	+0.1
1,819,967	+		BBR_RS17985	0.16	+0.3
1,819,983	-		BBR_RS17985	0.16	+0.0
1,819,988	+		BBR_RS17985	0.16	+0.0
1,819,998	+		BBR_RS17985	0.16	+2.4
1,819,998	-		BBR_RS17985	0.16	+1.1
1,820,000	+		BBR_RS17985	0.17	+0.8
1,820,007	-		BBR_RS17985	0.17	-0.6
1,820,025	+		BBR_RS17985	0.17	+0.4
1,820,032	+		BBR_RS17985	0.17	+0.7
1,820,071	-		BBR_RS17985	0.18	+1.1
1,820,080	+		BBR_RS17985	0.18	-1.6
1,820,103	+		BBR_RS17985	0.19	-1.2
1,820,111	-		BBR_RS17985	0.19	-0.9
1,820,119	-		BBR_RS17985	0.19	+0.4
1,820,119	-		BBR_RS17985	0.19	-0.7
1,820,145	+		BBR_RS17985	0.20	+0.3
1,820,185	+		BBR_RS17985	0.21	+0.9
1,820,193	-		BBR_RS17985	0.21	+0.2
1,820,193	-		BBR_RS17985	0.21	-0.1
1,820,193	-		BBR_RS17985	0.21	+2.2
1,820,198	-		BBR_RS17985	0.21	-1.5
1,820,202	+		BBR_RS17985	0.21	+0.9
1,820,203	-		BBR_RS17985	0.22	-2.1
1,820,218	+		BBR_RS17985	0.22	-1.3
1,820,241	-		BBR_RS17985	0.22	-0.2
1,820,253	-		BBR_RS17985	0.23	+0.4
1,820,255	+		BBR_RS17985	0.23	+0.3
1,820,255	+		BBR_RS17985	0.23	+0.0
1,820,263	-		BBR_RS17985	0.23	+0.5
1,820,264	-		BBR_RS17985	0.23	-0.9
1,820,336	+		BBR_RS17985	0.25	-0.3
1,820,388	+		BBR_RS17985	0.26	+0.1
1,820,437	+		BBR_RS17985	0.27	+0.6
1,820,437	+		BBR_RS17985	0.27	-0.3
1,820,439	-		BBR_RS17985	0.27	+1.8
1,820,441	+		BBR_RS17985	0.27	-0.1
1,820,442	+		BBR_RS17985	0.27	-0.1
1,820,479	-		BBR_RS17985	0.28	-0.3
1,820,486	+		BBR_RS17985	0.28	+0.6
1,820,510	+		BBR_RS17985	0.29	+0.7
1,820,528	-		BBR_RS17985	0.29	+0.6
1,820,540	-		BBR_RS17985	0.30	+0.7
1,820,550	-		BBR_RS17985	0.30	-0.5
1,820,554	+		BBR_RS17985	0.30	-0.8
1,820,556	+		BBR_RS17985	0.30	+0.3
1,820,556	+		BBR_RS17985	0.30	+0.8
1,820,556	+		BBR_RS17985	0.30	-0.4
1,820,556	+		BBR_RS17985	0.30	-0.6
1,820,556	+		BBR_RS17985	0.30	+0.9
1,820,556	+		BBR_RS17985	0.30	+2.2
1,820,556	+		BBR_RS17985	0.30	+0.2
1,820,556	+		BBR_RS17985	0.30	+0.7
1,820,556	+		BBR_RS17985	0.30	+0.3
1,820,556	+		BBR_RS17985	0.30	-0.7
1,820,556	+		BBR_RS17985	0.30	-1.8
1,820,556	+		BBR_RS17985	0.30	+0.3
1,820,556	+		BBR_RS17985	0.30	+1.0
1,820,556	+		BBR_RS17985	0.30	+0.2
1,820,564	-		BBR_RS17985	0.30	-1.1
1,820,564	-		BBR_RS17985	0.30	-0.3
1,820,564	-		BBR_RS17985	0.30	-0.4
1,820,564	-		BBR_RS17985	0.30	+0.3
1,820,564	-		BBR_RS17985	0.30	+1.1
1,820,564	-		BBR_RS17985	0.30	+1.1
1,820,564	-		BBR_RS17985	0.30	+0.6
1,820,564	-		BBR_RS17985	0.30	+1.4
1,820,602	-		BBR_RS17985	0.31	-0.3
1,820,638	+		BBR_RS17985	0.32	+2.1
1,820,638	+		BBR_RS17985	0.32	+0.8
1,820,643	+		BBR_RS17985	0.32	+0.0
1,820,651	-		BBR_RS17985	0.33	+2.5
1,820,712	-		BBR_RS17985	0.34	-0.7
1,820,719	-		BBR_RS17985	0.34	-0.2
1,820,737	+		BBR_RS17985	0.35	-1.5
1,820,737	-		BBR_RS17985	0.35	+1.0
1,820,744	+		BBR_RS17985	0.35	+0.2
1,820,750	-		BBR_RS17985	0.35	-0.6
1,820,752	+		BBR_RS17985	0.35	+1.2
1,820,760	-		BBR_RS17985	0.35	-0.3
1,820,762	+		BBR_RS17985	0.35	-0.9
1,820,765	-		BBR_RS17985	0.35	-0.1
1,820,770	-		BBR_RS17985	0.35	+1.9
1,820,770	-		BBR_RS17985	0.35	+2.6
1,820,834	+		BBR_RS17985	0.37	-0.1
1,820,854	+		BBR_RS17985	0.38	-0.1
1,820,863	-		BBR_RS17985	0.38	-1.1
1,820,863	-		BBR_RS17985	0.38	+0.6
1,820,865	+		BBR_RS17985	0.38	-0.2
1,820,868	-		BBR_RS17985	0.38	-1.6
1,820,873	-		BBR_RS17985	0.38	+0.4
1,820,906	+		BBR_RS17985	0.39	+0.9
1,820,913	-		BBR_RS17985	0.39	-1.7
1,820,950	-		BBR_RS17985	0.40	+2.4
1,820,965	+		BBR_RS17985	0.40	-0.2
1,821,008	+		BBR_RS17985	0.41	+0.9
1,821,016	-		BBR_RS17985	0.42	-0.5
1,821,066	+		BBR_RS17985	0.43	+0.4
1,821,074	-		BBR_RS17985	0.43	+0.4
1,821,085	+		BBR_RS17985	0.43	-0.3
1,821,093	-		BBR_RS17985	0.43	+0.1
1,821,105	-		BBR_RS17985	0.44	+0.4
1,821,118	-		BBR_RS17985	0.44	-0.3
1,821,161	+		BBR_RS17985	0.45	+0.1
1,821,165	+		BBR_RS17985	0.45	-0.4
1,821,187	+		BBR_RS17985	0.46	-0.1
1,821,195	-		BBR_RS17985	0.46	+0.4
1,821,195	-		BBR_RS17985	0.46	+0.4
1,821,201	-		BBR_RS17985	0.46	+0.3
1,821,208	+		BBR_RS17985	0.46	-0.1
1,821,208	+		BBR_RS17985	0.46	+0.7
1,821,210	-		BBR_RS17985	0.46	-0.4
1,821,242	-		BBR_RS17985	0.47	+2.4
1,821,271	+		BBR_RS17985	0.48	+0.1
1,821,273	-		BBR_RS17985	0.48	+0.6
1,821,276	+		BBR_RS17985	0.48	+2.6
1,821,276	+		BBR_RS17985	0.48	+2.0
1,821,284	-		BBR_RS17985	0.48	-0.1
1,821,346	-		BBR_RS17985	0.50	+0.2
1,821,354	+		BBR_RS17985	0.50	+0.3
1,821,362	-		BBR_RS17985	0.50	-1.3
1,821,445	+		BBR_RS17985	0.52	+0.5
1,821,445	+		BBR_RS17985	0.52	-0.4
1,821,454	-		BBR_RS17985	0.52	+0.1
1,821,491	+		BBR_RS17985	0.53	-1.3
1,821,518	+		BBR_RS17985	0.54	+0.4
1,821,518	+		BBR_RS17985	0.54	+1.2
1,821,518	+		BBR_RS17985	0.54	-0.4
1,821,523	+		BBR_RS17985	0.54	-0.6
1,821,533	-		BBR_RS17985	0.54	+0.6
1,821,593	+		BBR_RS17985	0.56	+0.1
1,821,601	-		BBR_RS17985	0.56	+0.3
1,821,601	-		BBR_RS17985	0.56	+0.7
1,821,657	+		BBR_RS17985	0.57	-0.5
1,821,659	+		BBR_RS17985	0.57	+0.6
1,821,665	-		BBR_RS17985	0.57	-0.7
1,821,679	+		BBR_RS17985	0.58	+0.1
1,821,697	-		BBR_RS17985	0.58	-0.4
1,821,712	-		BBR_RS17985	0.59	-1.6
1,821,712	-		BBR_RS17985	0.59	-0.1
1,821,715	+		BBR_RS17985	0.59	+2.5
1,821,730	+		BBR_RS17985	0.59	-0.8
1,821,784	-		BBR_RS17985	0.60	-0.1
1,821,792	-		BBR_RS17985	0.61	+0.0
1,821,798	-		BBR_RS17985	0.61	+0.1
1,821,802	-		BBR_RS17985	0.61	+0.1
1,821,804	+		BBR_RS17985	0.61	+0.2
1,821,804	+		BBR_RS17985	0.61	+1.8
1,821,859	-		BBR_RS17985	0.62	+0.4
1,821,926	-		BBR_RS17985	0.64	+2.1
1,821,931	+		BBR_RS17985	0.64	-1.4
1,821,931	+		BBR_RS17985	0.64	-1.2
1,821,933	-		BBR_RS17985	0.64	+0.9
1,821,939	-		BBR_RS17985	0.64	+0.9
1,821,949	-		BBR_RS17985	0.64	+2.4
1,822,003	-		BBR_RS17985	0.66	-0.1
1,822,075	-		BBR_RS17985	0.68	+0.1
1,822,084	+		BBR_RS17985	0.68	+0.4
1,822,172	+		BBR_RS17985	0.70	+0.7
1,822,224	-		BBR_RS17985	0.71	-0.9
1,822,235	-		BBR_RS17985	0.71	-0.5
1,822,357	+		BBR_RS17985	0.74	+0.5
1,822,363	+		BBR_RS17985	0.75	+0.6
1,822,363	+		BBR_RS17985	0.75	+0.7
1,822,398	-		BBR_RS17985	0.75	+0.3
1,822,413	+		BBR_RS17985	0.76	+0.3
1,822,413	+		BBR_RS17985	0.76	-0.0
1,822,413	+		BBR_RS17985	0.76	-0.6
1,822,421	-		BBR_RS17985	0.76	-0.8
1,822,421	-		BBR_RS17985	0.76	-1.2
1,822,444	-		BBR_RS17985	0.77	-0.3
1,822,475	+		BBR_RS17985	0.77	-1.0
1,822,475	+		BBR_RS17985	0.77	-1.1
1,822,480	+		BBR_RS17985	0.78	+1.8
1,822,480	+		BBR_RS17985	0.78	+1.4
1,822,482	-		BBR_RS17985	0.78	+0.3
1,822,483	-		BBR_RS17985	0.78	+0.4
1,822,488	-		BBR_RS17985	0.78	+0.7
1,822,488	-		BBR_RS17985	0.78	-0.4
1,822,539	+		BBR_RS17985	0.79	-0.3
1,822,539	+		BBR_RS17985	0.79	-0.3
1,822,571	+		BBR_RS17985	0.80	-0.6
1,822,575	+		BBR_RS17985	0.80	+2.4
1,822,575	+		BBR_RS17985	0.80	+2.3
1,822,630	+		BBR_RS17985	0.81	-0.3
1,822,630	+		BBR_RS17985	0.81	+0.1
1,822,630	+		BBR_RS17985	0.81	+0.9
1,822,630	+		BBR_RS17985	0.81	+0.3
1,822,630	+		BBR_RS17985	0.81	+0.7
1,822,630	+		BBR_RS17985	0.81	+2.6
1,822,647	+		BBR_RS17985	0.82	+0.5
1,822,647	+		BBR_RS17985	0.82	+0.2
1,822,655	-		BBR_RS17985	0.82	-0.4
1,822,666	-		BBR_RS17985	0.82	+0.2
1,822,707	-		BBR_RS17985	0.83	-1.6
1,822,743	-		BBR_RS17985	0.84	-0.3
1,822,803	+		BBR_RS17985	0.85	+1.3
1,822,803	+		BBR_RS17985	0.85	+0.1
1,822,811	-		BBR_RS17985	0.86	-0.3
1,822,833	-		BBR_RS17985	0.86	-0.5
1,822,874	+		BBR_RS17985	0.87	+0.9
1,822,882	-		BBR_RS17985	0.87	-1.3
1,822,983	+		BBR_RS17985	0.90	-0.7
1,822,989	+				+2.6
1,822,989	+				-0.9
1,822,989	+				-0.1
1,822,997	-				+1.1
1,822,997	-				+0.1
1,823,006	+				-0.3
1,823,021	-				-0.2
1,823,021	-				+0.4
1,823,026	-				-0.2
1,823,028	+				+0.7
1,823,051	+				+0.5
1,823,097	+				+1.8
1,823,111	+				-0.1
1,823,115	+				-1.0
1,823,132	-				+1.1
1,823,137	-				+0.1
1,823,146	-				-0.0
1,823,158	-				-0.5
1,823,158	-				-0.6
1,823,158	-				-1.3
1,823,158	-				+2.5
1,823,160	+				+0.6
1,823,160	+				+0.1
1,823,160	+				-0.3
1,823,165	+				+0.5
1,823,178	-				-0.3
1,823,240	-				-0.0
1,823,293	-				+0.6
1,823,293	-				+0.0
1,823,298	+				-0.4
1,823,355	+				-0.2
1,823,355	+				-0.6
1,823,397	+				+0.6
1,823,449	+				-0.5
1,823,503	+				-2.0
1,823,513	+				+0.1
1,823,538	+				+1.4
1,823,561	+				+0.6
1,823,561	-				-0.9
1,823,594	+				-0.6
1,823,594	+				-1.7
1,823,602	-				-3.3
1,823,602	-				-3.2
1,823,602	-				-1.4
1,823,606	+				-1.4
1,823,612	+				-2.4
1,823,679	+		BBR_RS17990	0.11	-1.0
1,823,709	+		BBR_RS17990	0.14	-2.0
1,823,714	+		BBR_RS17990	0.14	-1.9
1,823,732	+		BBR_RS17990	0.16	-0.8
1,823,736	+		BBR_RS17990	0.16	-0.6
1,823,842	-		BBR_RS17990	0.27	-1.7
1,823,843	-		BBR_RS17990	0.27	-1.6
1,823,844	+		BBR_RS17990	0.27	-3.2
1,823,844	+		BBR_RS17990	0.27	-3.1
1,823,846	+		BBR_RS17990	0.27	-1.7
1,823,854	+		BBR_RS17990	0.28	-1.7
1,823,854	-		BBR_RS17990	0.28	-1.9
1,823,890	-		BBR_RS17990	0.31	-1.0
1,823,894	+		BBR_RS17990	0.32	-2.5
1,823,894	+		BBR_RS17990	0.32	-1.8
1,823,939	+		BBR_RS17990	0.36	-2.3
1,823,939	+		BBR_RS17990	0.36	+0.2
1,823,947	-		BBR_RS17990	0.37	-2.1
1,823,991	+		BBR_RS17990	0.41	-1.2
1,824,035	-		BBR_RS17990	0.45	-1.8
1,824,047	+		BBR_RS17990	0.47	-2.3
1,824,061	-		BBR_RS17990	0.48	-1.8
1,824,078	+		BBR_RS17990	0.50	-1.1
1,824,119	+		BBR_RS17990	0.54	-1.1
1,824,124	+		BBR_RS17990	0.54	-1.7
1,824,127	-		BBR_RS17990	0.55	-2.8
1,824,127	-		BBR_RS17990	0.55	-0.7
1,824,132	-		BBR_RS17990	0.55	-0.8
1,824,144	-		BBR_RS17990	0.56	-0.8
1,824,189	+		BBR_RS17990	0.61	-1.4
1,824,189	+		BBR_RS17990	0.61	-2.6
1,824,195	-		BBR_RS17990	0.61	-0.6
1,824,195	-		BBR_RS17990	0.61	-0.5
1,824,224	+		BBR_RS17990	0.64	-2.3
1,824,224	+		BBR_RS17990	0.64	+0.7
1,824,226	+		BBR_RS17990	0.64	+0.8
1,824,232	-		BBR_RS17990	0.65	-2.4
1,824,244	+		BBR_RS17990	0.66	-1.4
1,824,244	+		BBR_RS17990	0.66	-2.4
1,824,252	-		BBR_RS17990	0.67	-1.4
1,824,259	-		BBR_RS17990	0.67	-3.0
1,824,273	+		BBR_RS17990	0.69	-1.2
1,824,276	-		BBR_RS17990	0.69	-0.5
1,824,292	+		BBR_RS17990	0.71	-2.6
1,824,302	+		BBR_RS17990	0.72	-1.2
1,824,378	+		BBR_RS17990	0.79	-2.8
1,824,386	-		BBR_RS17990	0.80	-2.4
1,824,386	-		BBR_RS17990	0.80	-1.2
1,824,386	-		BBR_RS17990	0.80	-1.8
1,824,386	-		BBR_RS17990	0.80	-1.1
1,824,387	+		BBR_RS17990	0.80	-1.8