Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17965

Experiment: cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
1,814,723	-				+0.3
1,814,725	+				-0.4
1,814,728	-				-1.4
1,814,738	-				-0.6
1,814,738	-				-0.3
1,814,761	+				-0.4
1,814,787	-		BBR_RS17960	0.10	-0.2
1,814,794	-		BBR_RS17960	0.11	+0.9
1,814,832	-		BBR_RS17960	0.15	-0.2
1,814,844	+		BBR_RS17960	0.16	-0.7
1,814,861	+		BBR_RS17960	0.18	-2.9
1,814,871	+		BBR_RS17960	0.19	-0.6
1,814,877	-		BBR_RS17960	0.20	-1.5
1,814,924	+		BBR_RS17960	0.25	-0.8
1,814,977	-		BBR_RS17960	0.30	-0.1
1,814,996	+		BBR_RS17960	0.32	+0.1
1,814,996	+		BBR_RS17960	0.32	-0.9
1,814,996	+		BBR_RS17960	0.32	-0.7
1,814,996	+		BBR_RS17960	0.32	-1.1
1,814,996	+		BBR_RS17960	0.32	-0.2
1,815,004	-		BBR_RS17960	0.33	-0.1
1,815,004	-		BBR_RS17960	0.33	-0.3
1,815,004	-		BBR_RS17960	0.33	+1.0
1,815,004	-		BBR_RS17960	0.33	-0.2
1,815,004	-		BBR_RS17960	0.33	-0.2
1,815,019	+		BBR_RS17960	0.34	+0.6
1,815,019	+		BBR_RS17960	0.34	+0.5
1,815,019	+		BBR_RS17960	0.34	+0.2
1,815,027	-		BBR_RS17960	0.35	-0.4
1,815,052	-		BBR_RS17960	0.38	-1.5
1,815,097	-		BBR_RS17960	0.42	-1.9
1,815,107	-		BBR_RS17960	0.43	+1.8
1,815,107	-		BBR_RS17960	0.43	+0.7
1,815,107	-		BBR_RS17960	0.43	+1.8
1,815,174	-		BBR_RS17960	0.50	+0.1
1,815,183	+		BBR_RS17960	0.51	-0.2
1,815,193	+		BBR_RS17960	0.52	-0.7
1,815,204	-		BBR_RS17960	0.53	+0.6
1,815,224	+		BBR_RS17960	0.56	+0.4
1,815,255	+		BBR_RS17960	0.59	-0.7
1,815,296	-		BBR_RS17960	0.63	-0.9
1,815,307	+		BBR_RS17960	0.64	+0.2
1,815,312	+		BBR_RS17960	0.65	+1.4
1,815,317	+		BBR_RS17960	0.65	+2.6
1,815,317	+		BBR_RS17960	0.65	+0.3
1,815,317	+		BBR_RS17960	0.65	+2.3
1,815,318	-		BBR_RS17960	0.65	-0.8
1,815,325	-		BBR_RS17960	0.66	+2.4
1,815,325	-		BBR_RS17960	0.66	-0.3
1,815,325	-		BBR_RS17960	0.66	+0.3
1,815,325	-		BBR_RS17960	0.66	+0.6
1,815,329	-		BBR_RS17960	0.66	-1.5
1,815,329	-		BBR_RS17960	0.66	+0.1
1,815,329	-		BBR_RS17960	0.66	+0.4
1,815,329	-		BBR_RS17960	0.66	-1.4
1,815,331	-		BBR_RS17960	0.67	-0.5
1,815,339	+		BBR_RS17960	0.67	-1.4
1,815,455	-		BBR_RS17960	0.79	-0.9
1,815,455	-		BBR_RS17960	0.79	-1.0
1,815,549	-		BBR_RS17960	0.89	-0.1
1,815,605	-				-0.0
1,815,670	-				-0.2
1,815,680	+				-0.4
1,815,687	+				+2.0
1,815,690	+				-0.6
1,815,690	+				-1.8
1,815,696	-				+1.5
1,815,696	-				-0.2
1,815,703	+				-1.4
1,815,706	-				+0.4
1,815,711	-				+2.1
1,815,736	+				-0.5
1,815,746	-				+0.3
1,815,746	-				+0.0
1,815,785	-				+0.0
1,815,817	-				-0.8
1,815,828	+				-1.7
1,815,834	-		BBR_RS17965	0.10	-4.6
1,815,886	-		BBR_RS17965	0.15	+0.9
1,815,886	-		BBR_RS17965	0.15	-0.7
1,815,917	-		BBR_RS17965	0.17	-0.4
1,815,964	-		BBR_RS17965	0.21	+0.2
1,815,985	+		BBR_RS17965	0.23	-1.0
1,815,988	-		BBR_RS17965	0.23	+0.9
1,815,993	-		BBR_RS17965	0.24	-0.3
1,816,003	-		BBR_RS17965	0.24	+2.5
1,816,022	-		BBR_RS17965	0.26	-0.3
1,816,047	-		BBR_RS17965	0.28	+1.0
1,816,061	+		BBR_RS17965	0.29	+0.2
1,816,061	+		BBR_RS17965	0.29	-0.2
1,816,067	-		BBR_RS17965	0.30	-0.3
1,816,080	+		BBR_RS17965	0.31	-1.5
1,816,090	-		BBR_RS17965	0.32	-0.1
1,816,121	-		BBR_RS17965	0.34	-2.2
1,816,157	-		BBR_RS17965	0.37	+0.4
1,816,197	-		BBR_RS17965	0.40	-0.4
1,816,211	+		BBR_RS17965	0.42	+1.8
1,816,228	+		BBR_RS17965	0.43	+0.0
1,816,228	+		BBR_RS17965	0.43	-2.4
1,816,243	-		BBR_RS17965	0.44	+1.4
1,816,265	+		BBR_RS17965	0.46	-0.6
1,816,265	+		BBR_RS17965	0.46	-0.8
1,816,265	+		BBR_RS17965	0.46	+0.0
1,816,273	-		BBR_RS17965	0.47	-0.4
1,816,273	-		BBR_RS17965	0.47	+0.2
1,816,273	-		BBR_RS17965	0.47	-1.9
1,816,273	-		BBR_RS17965	0.47	-2.1
1,816,275	+		BBR_RS17965	0.47	+0.0
1,816,278	-		BBR_RS17965	0.47	-0.1
1,816,329	+		BBR_RS17965	0.51	-0.8
1,816,332	-		BBR_RS17965	0.51	+0.3
1,816,332	-		BBR_RS17965	0.51	-0.4
1,816,337	+		BBR_RS17965	0.52	-2.7
1,816,337	-		BBR_RS17965	0.52	-2.3
1,816,344	+		BBR_RS17965	0.52	+0.5
1,816,347	-		BBR_RS17965	0.53	+1.1
1,816,390	+		BBR_RS17965	0.56	+0.7
1,816,390	+		BBR_RS17965	0.56	-0.7
1,816,398	-		BBR_RS17965	0.57	-1.5
1,816,435	+		BBR_RS17965	0.60	+0.0
1,816,443	-		BBR_RS17965	0.61	+1.9
1,816,443	-		BBR_RS17965	0.61	+2.4
1,816,456	+		BBR_RS17965	0.62	-0.1
1,816,487	-		BBR_RS17965	0.64	-0.1
1,816,499	+		BBR_RS17965	0.65	-0.8
1,816,499	+		BBR_RS17965	0.65	-1.4
1,816,512	-		BBR_RS17965	0.66	+0.2
1,816,514	+		BBR_RS17965	0.67	+1.2
1,816,522	-		BBR_RS17965	0.67	-0.5
1,816,557	+		BBR_RS17965	0.70	-0.1
1,816,557	+		BBR_RS17965	0.70	-0.2
1,816,557	+		BBR_RS17965	0.70	+1.0
1,816,565	-		BBR_RS17965	0.71	+1.5
1,816,575	-		BBR_RS17965	0.72	-0.1
1,816,583	-		BBR_RS17965	0.72	+0.6
1,816,611	-		BBR_RS17965	0.75	-0.1
1,816,611	-		BBR_RS17965	0.75	-0.5
1,816,696	+		BBR_RS17965	0.82	+0.4
1,816,696	+		BBR_RS17965	0.82	+0.0
1,816,696	+		BBR_RS17965	0.82	-0.1
1,816,698	-		BBR_RS17965	0.82	+1.9
1,816,698	-		BBR_RS17965	0.82	+2.1
1,816,701	+		BBR_RS17965	0.82	-2.4
1,816,704	-		BBR_RS17965	0.82	+0.3
1,816,704	-		BBR_RS17965	0.82	-0.4
1,816,704	-		BBR_RS17965	0.82	-1.1
1,816,709	-		BBR_RS17965	0.83	+2.3
1,816,709	-		BBR_RS17965	0.83	-1.0
1,816,714	-		BBR_RS17965	0.83	-0.1
1,816,772	+		BBR_RS17965	0.88	+2.1
1,816,772	+		BBR_RS17965	0.88	-0.4
1,816,772	+		BBR_RS17965	0.88	+0.6
1,816,772	+		BBR_RS17965	0.88	+0.0
1,816,772	+		BBR_RS17965	0.88	-0.1
1,816,772	+		BBR_RS17965	0.88	-0.1
1,816,772	+		BBR_RS17965	0.88	+0.2
1,816,780	-		BBR_RS17965	0.88	-1.4
1,816,780	-		BBR_RS17965	0.88	-0.5
1,816,780	-		BBR_RS17965	0.88	-1.4
1,816,780	-		BBR_RS17965	0.88	-1.2
1,816,780	-		BBR_RS17965	0.88	-0.9
1,816,780	-		BBR_RS17965	0.88	+1.5
1,816,782	+		BBR_RS17965	0.89	+0.2
1,816,783	+		BBR_RS17965	0.89	-0.0
1,816,791	-		BBR_RS17965	0.89	-0.7
1,816,896	+				-0.5
1,816,896	+				+0.3
1,816,904	-				-1.8
1,816,909	-				+2.3
1,816,921	+				-0.0
1,816,925	+				+0.1
1,816,925	+				-0.6
1,816,956	-				+0.2
1,816,961	+				-0.7
1,816,985	-				-1.2
1,817,002	+				+0.2
1,817,005	-				+1.7
1,817,095	+				-3.0
1,817,102	+				-1.5
1,817,110	-				-3.5
1,817,110	-				-1.3
1,817,110	-				-1.5
1,817,110	-				-1.6
1,817,113	+				-1.3
1,817,113	+				-3.3
1,817,121	-				-3.2
1,817,146	+		BBR_RS17970	0.12	-2.4
1,817,154	-		BBR_RS17970	0.13	-2.7
1,817,162	-		BBR_RS17970	0.14	-1.5
1,817,167	+		BBR_RS17970	0.14	-2.6
1,817,168	-		BBR_RS17970	0.14	-3.2
1,817,168	-		BBR_RS17970	0.14	-1.8
1,817,188	-		BBR_RS17970	0.16	-2.6
1,817,206	+		BBR_RS17970	0.18	-2.0
1,817,214	-		BBR_RS17970	0.19	-2.5
1,817,214	-		BBR_RS17970	0.19	-1.1
1,817,224	-		BBR_RS17970	0.20	-3.0
1,817,236	+		BBR_RS17970	0.21	-2.9
1,817,244	-		BBR_RS17970	0.21	-2.8
1,817,244	-		BBR_RS17970	0.21	-3.5
1,817,244	-		BBR_RS17970	0.21	-2.8
1,817,263	+		BBR_RS17970	0.23	-2.8
1,817,284	+		BBR_RS17970	0.25	-3.1
1,817,285	+		BBR_RS17970	0.25	-1.0
1,817,287	-		BBR_RS17970	0.25	-3.2
1,817,292	-		BBR_RS17970	0.26	-3.6
1,817,402	+		BBR_RS17970	0.36	-2.2
1,817,410	-		BBR_RS17970	0.37	-1.4
1,817,412	+		BBR_RS17970	0.37	-3.6
1,817,412	+		BBR_RS17970	0.37	-1.8
1,817,424	+		BBR_RS17970	0.38	-2.1
1,817,431	+		BBR_RS17970	0.39	-2.3
1,817,431	+		BBR_RS17970	0.39	-4.1
1,817,442	-		BBR_RS17970	0.40	-2.9
1,817,469	+		BBR_RS17970	0.43	-0.0
1,817,477	-		BBR_RS17970	0.43	-3.4
1,817,489	+		BBR_RS17970	0.45	-1.6
1,817,537	-		BBR_RS17970	0.49	-1.2
1,817,539	+		BBR_RS17970	0.49	-2.2
1,817,541	+		BBR_RS17970	0.50	-2.3
1,817,547	-		BBR_RS17970	0.50	-1.1
1,817,551	+		BBR_RS17970	0.50	-1.6
1,817,553	+		BBR_RS17970	0.51	-2.2
1,817,594	+		BBR_RS17970	0.55	-3.7
1,817,594	+		BBR_RS17970	0.55	-2.4
1,817,599	+		BBR_RS17970	0.55	-2.1
1,817,604	+		BBR_RS17970	0.55	-1.2
1,817,610	+		BBR_RS17970	0.56	-2.2
1,817,610	+		BBR_RS17970	0.56	-3.4
1,817,626	-		BBR_RS17970	0.58	-2.1
1,817,640	-		BBR_RS17970	0.59	-2.3
1,817,641	+		BBR_RS17970	0.59	-1.9
1,817,651	+		BBR_RS17970	0.60	-2.5
1,817,659	-		BBR_RS17970	0.61	-2.8
1,817,659	-		BBR_RS17970	0.61	-3.3
1,817,682	+		BBR_RS17970	0.63	-1.2
1,817,682	-		BBR_RS17970	0.63	-2.4
1,817,682	-		BBR_RS17970	0.63	-0.5
1,817,685	+		BBR_RS17970	0.63	-1.9
1,817,685	+		BBR_RS17970	0.63	-3.9
1,817,689	-		BBR_RS17970	0.64	-4.4
1,817,693	-		BBR_RS17970	0.64	-3.1
1,817,703	-		BBR_RS17970	0.65	-2.0
1,817,719	+		BBR_RS17970	0.66	-1.5
1,817,732	+		BBR_RS17970	0.68	-2.0
1,817,732	+		BBR_RS17970	0.68	-1.0
1,817,732	+		BBR_RS17970	0.68	-2.3
1,817,732	+		BBR_RS17970	0.68	-0.9
1,817,732	+		BBR_RS17970	0.68	-2.6
1,817,734	+		BBR_RS17970	0.68	-1.9
1,817,734	+		BBR_RS17970	0.68	-3.4
1,817,740	-		BBR_RS17970	0.68	-2.3
1,817,740	-		BBR_RS17970	0.68	-3.0
1,817,742	-		BBR_RS17970	0.69	-2.3
1,817,742	-		BBR_RS17970	0.69	-2.6
1,817,804	+		BBR_RS17970	0.74	-2.2
1,817,804	+		BBR_RS17970	0.74	-2.7
1,817,804	+		BBR_RS17970	0.74	-1.9
1,817,842	+		BBR_RS17970	0.78	-3.4
1,817,878	+		BBR_RS17970	0.81	-2.6
1,817,878	+		BBR_RS17970	0.81	-2.7
1,817,878	+		BBR_RS17970	0.81	-1.7
1,817,886	-		BBR_RS17970	0.82	-4.1
1,817,886	-		BBR_RS17970	0.82	-1.4
1,817,886	-		BBR_RS17970	0.82	-4.3
1,817,886	-		BBR_RS17970	0.82	-2.5
1,817,886	-		BBR_RS17970	0.82	-2.9
1,817,886	-		BBR_RS17970	0.82	-2.8
1,817,886	-		BBR_RS17970	0.82	-2.6