Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15090

Experiment: cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS15085 and BBR_RS15090 are separated by 151 nucleotidesBBR_RS15090 and BBR_RS20880 are separated by 59 nucleotidesBBR_RS20880 and BBR_RS15095 overlap by 36 nucleotides BBR_RS15085: BBR_RS15085 - 3-dehydroquinate synthase, at 1,152,542 to 1,154,164 _RS15085 BBR_RS15090: BBR_RS15090 - type II 3-dehydroquinate dehydratase, at 1,154,316 to 1,154,762 _RS15090 BBR_RS20880: BBR_RS20880 - CTP synthetase, at 1,154,822 to 1,154,917 _RS20880 BBR_RS15095: BBR_RS15095 - CTP synthase, at 1,154,882 to 1,156,546 _RS15095 Position (kb) 1154 1155Strain fitness (log2 ratio) -2 -1 0 1at 1154.191 kb on + strandat 1154.193 kb on + strandat 1154.201 kb on - strandat 1154.219 kb on - strandat 1154.228 kb on - strandat 1154.229 kb on - strandat 1154.239 kb on + strandat 1154.273 kb on - strandat 1154.292 kb on - strandat 1154.521 kb on + strand, within BBR_RS15090at 1154.706 kb on + strand, within BBR_RS15090

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Per-strain Table

Position Strand Gene LocusTag Fraction cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
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1,154,191 + +0.1
1,154,193 + -0.2
1,154,201 - +1.3
1,154,219 - +0.5
1,154,228 - +1.2
1,154,229 - +0.4
1,154,239 + +0.0
1,154,273 - -1.3
1,154,292 - -0.8
1,154,521 + BBR_RS15090 0.46 -2.3
1,154,706 + BBR_RS15090 0.87 -1.7

Or see this region's nucleotide sequence