Experiment: cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS15040 and BBR_RS15045 are separated by 75 nucleotides BBR_RS15045 and BBR_RS15050 are separated by 82 nucleotides BBR_RS15050 and BBR_RS15055 overlap by 1 nucleotides BBR_RS15055 and BBR_RS15060 are separated by 95 nucleotides
BBR_RS15040: BBR_RS15040 - hypothetical protein, at 1,144,602 to 1,144,790
_RS15040
BBR_RS15045: BBR_RS15045 - histidine phosphatase family protein, at 1,144,866 to 1,145,540
_RS15045
BBR_RS15050: BBR_RS15050 - DUF948 domain-containing protein, at 1,145,623 to 1,146,027
_RS15050
BBR_RS15055: BBR_RS15055 - hypothetical protein, at 1,146,027 to 1,146,263
_RS15055
BBR_RS15060: BBR_RS15060 - alanine--tRNA ligase, at 1,146,359 to 1,149,037
_RS15060
Position (kb) 1145
1146
1147 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1144.793 kb on - strand at 1144.793 kb on - strand at 1144.872 kb on - strand at 1144.924 kb on - strand at 1144.929 kb on - strand at 1144.945 kb on - strand, within BBR_RS15045 at 1144.971 kb on + strand, within BBR_RS15045 at 1144.992 kb on + strand, within BBR_RS15045 at 1145.001 kb on + strand, within BBR_RS15045 at 1145.115 kb on + strand, within BBR_RS15045 at 1145.155 kb on + strand, within BBR_RS15045 at 1145.155 kb on - strand, within BBR_RS15045 at 1145.171 kb on + strand, within BBR_RS15045 at 1145.171 kb on + strand, within BBR_RS15045 at 1145.171 kb on + strand, within BBR_RS15045 at 1145.171 kb on + strand, within BBR_RS15045 at 1145.192 kb on - strand, within BBR_RS15045 at 1145.200 kb on + strand, within BBR_RS15045 at 1145.207 kb on + strand, within BBR_RS15045 at 1145.336 kb on - strand, within BBR_RS15045 at 1145.365 kb on + strand, within BBR_RS15045 at 1145.407 kb on + strand, within BBR_RS15045 at 1145.434 kb on + strand, within BBR_RS15045 at 1145.434 kb on + strand, within BBR_RS15045 at 1145.434 kb on + strand, within BBR_RS15045 at 1145.434 kb on + strand, within BBR_RS15045 at 1145.434 kb on + strand, within BBR_RS15045 at 1145.442 kb on - strand, within BBR_RS15045 at 1145.457 kb on + strand, within BBR_RS15045 at 1145.464 kb on - strand, within BBR_RS15045 at 1145.481 kb on - strand at 1145.483 kb on - strand at 1145.483 kb on - strand at 1145.492 kb on + strand at 1145.548 kb on - strand at 1145.567 kb on + strand at 1145.585 kb on + strand at 1145.588 kb on - strand at 1145.588 kb on - strand at 1145.588 kb on - strand at 1145.599 kb on + strand at 1145.750 kb on + strand, within BBR_RS15050 at 1145.771 kb on + strand, within BBR_RS15050 at 1145.938 kb on + strand, within BBR_RS15050 at 1145.953 kb on + strand, within BBR_RS15050 at 1146.038 kb on + strand at 1146.052 kb on + strand, within BBR_RS15055 at 1146.085 kb on + strand, within BBR_RS15055 at 1146.090 kb on + strand, within BBR_RS15055 at 1146.183 kb on + strand, within BBR_RS15055 at 1146.218 kb on + strand, within BBR_RS15055 at 1146.239 kb on + strand, within BBR_RS15055 at 1146.274 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 remove 1,144,793 - +0.6 1,144,793 - -0.7 1,144,872 - +0.3 1,144,924 - +1.1 1,144,929 - +0.6 1,144,945 - BBR_RS15045 0.12 +0.2 1,144,971 + BBR_RS15045 0.16 -0.1 1,144,992 + BBR_RS15045 0.19 +0.6 1,145,001 + BBR_RS15045 0.20 +0.0 1,145,115 + BBR_RS15045 0.37 +0.3 1,145,155 + BBR_RS15045 0.43 +0.2 1,145,155 - BBR_RS15045 0.43 -0.2 1,145,171 + BBR_RS15045 0.45 -1.7 1,145,171 + BBR_RS15045 0.45 +1.0 1,145,171 + BBR_RS15045 0.45 +1.7 1,145,171 + BBR_RS15045 0.45 +0.5 1,145,192 - BBR_RS15045 0.48 +1.8 1,145,200 + BBR_RS15045 0.49 -1.1 1,145,207 + BBR_RS15045 0.51 -0.9 1,145,336 - BBR_RS15045 0.70 -0.1 1,145,365 + BBR_RS15045 0.74 -0.2 1,145,407 + BBR_RS15045 0.80 +0.1 1,145,434 + BBR_RS15045 0.84 -2.0 1,145,434 + BBR_RS15045 0.84 +0.4 1,145,434 + BBR_RS15045 0.84 -0.1 1,145,434 + BBR_RS15045 0.84 -0.6 1,145,434 + BBR_RS15045 0.84 -1.1 1,145,442 - BBR_RS15045 0.85 -1.1 1,145,457 + BBR_RS15045 0.88 +0.5 1,145,464 - BBR_RS15045 0.89 -1.0 1,145,481 - -1.0 1,145,483 - -0.6 1,145,483 - -0.6 1,145,492 + -0.8 1,145,548 - -0.7 1,145,567 + -0.2 1,145,585 + +0.0 1,145,588 - -1.8 1,145,588 - -1.5 1,145,588 - +1.8 1,145,599 + -0.8 1,145,750 + BBR_RS15050 0.31 -1.9 1,145,771 + BBR_RS15050 0.37 -2.0 1,145,938 + BBR_RS15050 0.78 -2.2 1,145,953 + BBR_RS15050 0.81 -2.9 1,146,038 + -2.8 1,146,052 + BBR_RS15055 0.11 -2.1 1,146,085 + BBR_RS15055 0.24 -0.1 1,146,090 + BBR_RS15055 0.27 +1.5 1,146,183 + BBR_RS15055 0.66 -2.9 1,146,218 + BBR_RS15055 0.81 -0.1 1,146,239 + BBR_RS15055 0.89 -1.9 1,146,274 + -2.6
Or see this region's nucleotide sequence