Experiment: cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13495 and BBR_RS13500 are separated by 173 nucleotides BBR_RS13500 and BBR_RS13505 are separated by 207 nucleotides BBR_RS13505 and BBR_RS13510 are separated by 17 nucleotides
BBR_RS13495: BBR_RS13495 - elongation factor G, at 800,016 to 802,139
_RS13495
BBR_RS13500: BBR_RS13500 - elongation factor Tu, at 802,313 to 803,512
_RS13500
BBR_RS13505: BBR_RS13505 - DUF4391 domain-containing protein, at 803,720 to 804,451
_RS13505
BBR_RS13510: BBR_RS13510 - LysR family transcriptional regulator, at 804,469 to 805,284
_RS13510
Position (kb) 802
803
804 Strain fitness (log2 ratio) -1
0
1
2 at 802.091 kb on + strand at 802.115 kb on + strand at 802.115 kb on + strand at 802.155 kb on + strand at 803.677 kb on - strand at 803.677 kb on - strand at 803.677 kb on - strand at 803.883 kb on + strand, within BBR_RS13505 at 803.934 kb on - strand, within BBR_RS13505 at 803.934 kb on - strand, within BBR_RS13505 at 803.981 kb on - strand, within BBR_RS13505 at 804.005 kb on + strand, within BBR_RS13505 at 804.120 kb on + strand, within BBR_RS13505 at 804.130 kb on + strand, within BBR_RS13505 at 804.150 kb on + strand, within BBR_RS13505 at 804.206 kb on + strand, within BBR_RS13505 at 804.206 kb on + strand, within BBR_RS13505 at 804.439 kb on - strand at 804.446 kb on + strand at 804.446 kb on + strand at 804.446 kb on + strand at 804.446 kb on + strand at 804.446 kb on + strand at 804.446 kb on + strand at 804.446 kb on + strand at 804.454 kb on - strand at 804.454 kb on - strand at 804.459 kb on + strand at 804.467 kb on - strand at 804.488 kb on - strand at 804.499 kb on + strand at 804.506 kb on + strand at 804.509 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 remove 802,091 + -1.5 802,115 + +1.4 802,115 + -0.7 802,155 + +0.2 803,677 - +0.1 803,677 - +1.2 803,677 - +0.3 803,883 + BBR_RS13505 0.22 +0.2 803,934 - BBR_RS13505 0.29 +0.1 803,934 - BBR_RS13505 0.29 -0.2 803,981 - BBR_RS13505 0.36 +0.2 804,005 + BBR_RS13505 0.39 -0.5 804,120 + BBR_RS13505 0.55 -0.4 804,130 + BBR_RS13505 0.56 +2.2 804,150 + BBR_RS13505 0.59 +1.1 804,206 + BBR_RS13505 0.66 +2.0 804,206 + BBR_RS13505 0.66 +2.6 804,439 - +1.1 804,446 + -1.0 804,446 + +0.3 804,446 + +0.3 804,446 + +0.3 804,446 + +0.7 804,446 + +0.1 804,446 + +1.1 804,454 - -0.7 804,454 - -1.0 804,459 + -0.1 804,467 - -1.0 804,488 - -0.4 804,499 + +0.9 804,506 + +0.3 804,509 - -0.1
Or see this region's nucleotide sequence