Experiment: cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13480 and BBR_RS13485 are separated by 583 nucleotides BBR_RS13485 and BBR_RS13490 are separated by 5 nucleotides BBR_RS13490 and BBR_RS13495 are separated by 33 nucleotides
BBR_RS13480: BBR_RS13480 - bile acid:sodium symporter family protein, at 797,478 to 798,551
_RS13480
BBR_RS13485: BBR_RS13485 - 30S ribosomal protein S12, at 799,135 to 799,506
_RS13485
BBR_RS13490: BBR_RS13490 - 30S ribosomal protein S7, at 799,512 to 799,982
_RS13490
BBR_RS13495: BBR_RS13495 - elongation factor G, at 800,016 to 802,139
_RS13495
Position (kb) 799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 798.150 kb on - strand, within BBR_RS13480 at 798.155 kb on - strand, within BBR_RS13480 at 798.157 kb on + strand, within BBR_RS13480 at 798.173 kb on + strand, within BBR_RS13480 at 798.173 kb on + strand, within BBR_RS13480 at 798.176 kb on - strand, within BBR_RS13480 at 798.179 kb on + strand, within BBR_RS13480 at 798.221 kb on + strand, within BBR_RS13480 at 798.221 kb on + strand, within BBR_RS13480 at 798.232 kb on + strand, within BBR_RS13480 at 798.232 kb on + strand, within BBR_RS13480 at 798.233 kb on + strand, within BBR_RS13480 at 798.240 kb on - strand, within BBR_RS13480 at 798.248 kb on - strand, within BBR_RS13480 at 798.250 kb on + strand, within BBR_RS13480 at 798.257 kb on + strand, within BBR_RS13480 at 798.257 kb on + strand, within BBR_RS13480 at 798.257 kb on + strand, within BBR_RS13480 at 798.257 kb on + strand, within BBR_RS13480 at 798.258 kb on - strand, within BBR_RS13480 at 798.271 kb on + strand, within BBR_RS13480 at 798.330 kb on + strand, within BBR_RS13480 at 798.331 kb on + strand, within BBR_RS13480 at 798.362 kb on + strand, within BBR_RS13480 at 798.394 kb on - strand, within BBR_RS13480 at 798.396 kb on + strand, within BBR_RS13480 at 798.399 kb on + strand, within BBR_RS13480 at 798.399 kb on + strand, within BBR_RS13480 at 798.399 kb on - strand, within BBR_RS13480 at 798.399 kb on - strand, within BBR_RS13480 at 798.399 kb on - strand, within BBR_RS13480 at 798.401 kb on + strand, within BBR_RS13480 at 798.401 kb on + strand, within BBR_RS13480 at 798.404 kb on - strand, within BBR_RS13480 at 798.431 kb on + strand, within BBR_RS13480 at 798.455 kb on - strand at 798.469 kb on + strand at 798.501 kb on - strand at 798.501 kb on - strand at 798.506 kb on - strand at 798.540 kb on + strand at 798.604 kb on - strand at 798.657 kb on + strand at 798.734 kb on + strand at 798.742 kb on - strand at 798.742 kb on - strand at 798.742 kb on - strand at 798.752 kb on - strand at 798.752 kb on - strand at 798.767 kb on - strand at 798.769 kb on + strand at 798.778 kb on + strand at 798.778 kb on - strand at 798.822 kb on + strand at 798.823 kb on - strand at 798.825 kb on + strand at 798.825 kb on + strand at 798.825 kb on + strand at 798.830 kb on - strand at 798.833 kb on - strand at 798.835 kb on - strand at 798.835 kb on - strand at 798.845 kb on - strand at 798.845 kb on - strand at 799.805 kb on - strand, within BBR_RS13490
Per-strain Table
Position Strand Gene LocusTag Fraction cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482 remove 798,150 - BBR_RS13480 0.63 +0.2 798,155 - BBR_RS13480 0.63 -0.6 798,157 + BBR_RS13480 0.63 -0.2 798,173 + BBR_RS13480 0.65 +1.0 798,173 + BBR_RS13480 0.65 +1.3 798,176 - BBR_RS13480 0.65 +0.2 798,179 + BBR_RS13480 0.65 -2.2 798,221 + BBR_RS13480 0.69 +0.1 798,221 + BBR_RS13480 0.69 +2.5 798,232 + BBR_RS13480 0.70 +0.1 798,232 + BBR_RS13480 0.70 +1.6 798,233 + BBR_RS13480 0.70 +0.2 798,240 - BBR_RS13480 0.71 +1.2 798,248 - BBR_RS13480 0.72 +0.2 798,250 + BBR_RS13480 0.72 -0.3 798,257 + BBR_RS13480 0.73 +1.1 798,257 + BBR_RS13480 0.73 +0.0 798,257 + BBR_RS13480 0.73 -0.1 798,257 + BBR_RS13480 0.73 +1.3 798,258 - BBR_RS13480 0.73 +0.2 798,271 + BBR_RS13480 0.74 -1.1 798,330 + BBR_RS13480 0.79 -0.9 798,331 + BBR_RS13480 0.79 -0.5 798,362 + BBR_RS13480 0.82 +0.4 798,394 - BBR_RS13480 0.85 -0.3 798,396 + BBR_RS13480 0.85 -0.0 798,399 + BBR_RS13480 0.86 +0.8 798,399 + BBR_RS13480 0.86 +0.6 798,399 - BBR_RS13480 0.86 -0.9 798,399 - BBR_RS13480 0.86 +0.1 798,399 - BBR_RS13480 0.86 -0.8 798,401 + BBR_RS13480 0.86 +0.4 798,401 + BBR_RS13480 0.86 +1.0 798,404 - BBR_RS13480 0.86 +1.5 798,431 + BBR_RS13480 0.89 +0.4 798,455 - +1.1 798,469 + +0.6 798,501 - +0.1 798,501 - +0.8 798,506 - -0.6 798,540 + -0.6 798,604 - +0.7 798,657 + -0.4 798,734 + +1.0 798,742 - +1.9 798,742 - -0.1 798,742 - +0.5 798,752 - -0.8 798,752 - -0.3 798,767 - +0.6 798,769 + +0.6 798,778 + +1.4 798,778 - +0.1 798,822 + +0.9 798,823 - -0.7 798,825 + -0.3 798,825 + -1.9 798,825 + -0.9 798,830 - -0.7 798,833 - +0.3 798,835 - +0.1 798,835 - +0.0 798,845 - +0.5 798,845 - -0.7 799,805 - BBR_RS13490 0.62 -2.8
Or see this region's nucleotide sequence