Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19435

Experiment: cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Btheta_VPI5482
2,142,209	-				+0.7
2,142,264	-				-0.3
2,142,268	-				+2.5
2,142,280	+				-0.3
2,142,280	+				+0.3
2,142,283	-				+0.8
2,142,283	-				+0.1
2,142,298	+				+0.1
2,142,298	+				+0.1
2,142,299	-				+0.2
2,142,304	-				+2.9
2,142,304	-				-0.6
2,142,304	-				+0.1
2,142,316	-				+1.2
2,142,322	-				+0.5
2,142,345	-				+0.2
2,142,353	-				+0.2
2,142,746	+		BBR_RS19435	0.35	-2.3
2,142,746	+		BBR_RS19435	0.35	-1.9
2,142,829	-		BBR_RS19435	0.42	+0.2
2,142,887	+		BBR_RS19435	0.47	-3.3
2,142,895	-		BBR_RS19435	0.47	-1.1
2,143,004	+		BBR_RS19435	0.56	-1.0
2,143,038	-		BBR_RS19435	0.59	+0.3
2,143,142	+		BBR_RS19435	0.68	-2.5
2,143,431	-				+0.6
2,143,455	+				-3.0
2,143,499	-				-1.7
2,143,499	-				-0.5
2,143,499	-				-2.3
2,143,529	+				-0.8
2,143,537	-				-0.3
2,143,549	+				+0.2
2,143,549	+				-0.1
2,143,557	-				+1.0
2,143,557	-				+0.3
2,143,557	-				+0.1
2,143,563	+				+1.4
2,143,563	+				-0.7
2,143,571	-				-0.2
2,143,571	-				-1.7
2,143,571	-				+0.3
2,143,571	-				+1.7
2,143,575	+				-0.4
2,143,586	-				+0.3
2,143,610	+				-0.1
2,143,618	+				-0.8
2,143,620	+				-0.5
2,143,626	-				+0.1
2,143,626	-				+0.6
2,143,626	-				-0.7
2,143,626	-				+0.0
2,143,631	+				-0.5
2,143,641	+				+2.4
2,143,649	-				+0.5
2,143,649	-				+0.2
2,143,649	-				+0.7
2,143,649	-				-0.4
2,143,656	+				-0.2
2,143,666	+				-0.3
2,143,688	+				+0.7
2,143,696	-				+1.7
2,143,719	-				-0.6
2,143,719	-				+0.5
2,143,719	-				+1.0
2,143,722	-				-0.6
2,143,725	+				+0.2
2,143,727	-				-0.7
2,143,729	-				-1.0
2,143,733	-				+2.5
2,143,738	-				-0.2
2,143,751	-				-0.2
2,143,777	-				+0.1
2,143,777	-				-0.1
2,143,786	-				-0.3
2,143,798	-		BBR_RS19440	0.10	-0.2
2,143,853	+		BBR_RS19440	0.14	-0.2
2,143,866	-		BBR_RS19440	0.16	-1.3
2,143,866	-		BBR_RS19440	0.16	+0.1
2,143,871	-		BBR_RS19440	0.16	+0.6
2,143,877	+		BBR_RS19440	0.16	-0.5
2,143,878	-		BBR_RS19440	0.16	+2.1
2,143,905	+		BBR_RS19440	0.19	-1.2
2,143,915	+		BBR_RS19440	0.19	+0.2
2,143,918	-		BBR_RS19440	0.20	-0.0
2,143,966	-		BBR_RS19440	0.23	-0.7
2,144,031	+		BBR_RS19440	0.29	-0.1
2,144,041	-		BBR_RS19440	0.29	-0.5
2,144,041	-		BBR_RS19440	0.29	-1.8
2,144,059	+		BBR_RS19440	0.31	+0.5
2,144,059	+		BBR_RS19440	0.31	-0.2
2,144,059	+		BBR_RS19440	0.31	+3.1
2,144,059	+		BBR_RS19440	0.31	+1.5
2,144,059	+		BBR_RS19440	0.31	+2.9
2,144,059	+		BBR_RS19440	0.31	+0.2
2,144,059	+		BBR_RS19440	0.31	+0.2
2,144,064	+		BBR_RS19440	0.31	-0.8
2,144,066	+		BBR_RS19440	0.31	-1.2
2,144,067	-		BBR_RS19440	0.31	+0.6
2,144,067	-		BBR_RS19440	0.31	+0.4
2,144,067	-		BBR_RS19440	0.31	+1.2
2,144,067	-		BBR_RS19440	0.31	+0.2
2,144,067	-		BBR_RS19440	0.31	+0.2
2,144,067	-		BBR_RS19440	0.31	+0.3
2,144,067	-		BBR_RS19440	0.31	+0.5
2,144,067	-		BBR_RS19440	0.31	-1.3
2,144,067	-		BBR_RS19440	0.31	-0.0
2,144,067	-		BBR_RS19440	0.31	+0.6
2,144,074	-		BBR_RS19440	0.32	+1.0
2,144,096	-		BBR_RS19440	0.34	+0.4
2,144,111	-		BBR_RS19440	0.35	-0.0
2,144,122	-		BBR_RS19440	0.36	-0.6
2,144,125	-		BBR_RS19440	0.36	+0.7
2,144,125	-		BBR_RS19440	0.36	-0.2
2,144,155	+		BBR_RS19440	0.38	-0.1
2,144,156	-		BBR_RS19440	0.38	-0.2
2,144,163	-		BBR_RS19440	0.39	+2.4
2,144,171	-		BBR_RS19440	0.40	+0.4
2,144,178	-		BBR_RS19440	0.40	+0.9
2,144,180	+		BBR_RS19440	0.40	+1.4
2,144,180	+		BBR_RS19440	0.40	-0.1
2,144,180	+		BBR_RS19440	0.40	+0.4
2,144,180	+		BBR_RS19440	0.40	+1.1
2,144,180	+		BBR_RS19440	0.40	+0.3
2,144,182	+		BBR_RS19440	0.41	+0.9
2,144,182	+		BBR_RS19440	0.41	+0.7
2,144,182	+		BBR_RS19440	0.41	-0.4
2,144,188	-		BBR_RS19440	0.41	+0.5
2,144,188	-		BBR_RS19440	0.41	-0.1
2,144,188	-		BBR_RS19440	0.41	-0.0
2,144,188	-		BBR_RS19440	0.41	-0.8
2,144,188	-		BBR_RS19440	0.41	+0.4
2,144,190	-		BBR_RS19440	0.41	-0.2
2,144,192	+		BBR_RS19440	0.41	-0.5
2,144,192	+		BBR_RS19440	0.41	-0.4
2,144,200	-		BBR_RS19440	0.42	-2.1
2,144,200	-		BBR_RS19440	0.42	+1.2
2,144,200	-		BBR_RS19440	0.42	+2.5
2,144,200	-		BBR_RS19440	0.42	-0.8
2,144,216	-		BBR_RS19440	0.43	-0.3
2,144,216	-		BBR_RS19440	0.43	-0.1
2,144,238	+		BBR_RS19440	0.45	-0.6
2,144,238	+		BBR_RS19440	0.45	-0.0
2,144,241	-		BBR_RS19440	0.45	-0.6
2,144,293	-		BBR_RS19440	0.49	-0.9
2,144,293	-		BBR_RS19440	0.49	-0.5
2,144,342	+		BBR_RS19440	0.53	+1.0
2,144,342	+		BBR_RS19440	0.53	+2.4
2,144,349	-		BBR_RS19440	0.54	-1.2
2,144,349	-		BBR_RS19440	0.54	+0.1
2,144,384	-		BBR_RS19440	0.57	-1.1
2,144,403	-		BBR_RS19440	0.58	-1.0
2,144,409	+		BBR_RS19440	0.59	+1.1
2,144,409	+		BBR_RS19440	0.59	+0.6
2,144,409	+		BBR_RS19440	0.59	-0.9
2,144,409	+		BBR_RS19440	0.59	-0.1
2,144,417	-		BBR_RS19440	0.59	+0.1
2,144,417	-		BBR_RS19440	0.59	-0.3
2,144,417	-		BBR_RS19440	0.59	+0.3
2,144,417	-		BBR_RS19440	0.59	+0.4
2,144,419	-		BBR_RS19440	0.59	+0.1
2,144,432	-		BBR_RS19440	0.60	+1.3
2,144,443	-		BBR_RS19440	0.61	+0.5
2,144,443	-		BBR_RS19440	0.61	+2.6
2,144,443	-		BBR_RS19440	0.61	+3.1
2,144,450	+		BBR_RS19440	0.62	+0.8
2,144,472	+		BBR_RS19440	0.63	+0.3
2,144,496	+		BBR_RS19440	0.65	-0.9
2,144,503	+		BBR_RS19440	0.66	+0.4
2,144,511	+		BBR_RS19440	0.67	+1.3
2,144,511	-		BBR_RS19440	0.67	-0.7
2,144,511	-		BBR_RS19440	0.67	+1.2
2,144,516	+		BBR_RS19440	0.67	-0.1
2,144,527	+		BBR_RS19440	0.68	+3.3