Strain Fitness in Sinorhizobium meliloti 1021 around SMc01951

Experiment: 3-octanone 2.655166667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01950 and SMc01951 are separated by 4 nucleotidesSMc01951 and SMc01952 are separated by 394 nucleotides SMc01950: SMc01950 - high-affinity branched-chain amino acid ABC transporter permease, at 2,671,601 to 2,672,986 SMc01950 SMc01951: SMc01951 - high-affinity branched-chain amino acid ABC transporter permease, at 2,672,991 to 2,673,893 SMc01951 SMc01952: SMc01952 - transmembrane protein, at 2,674,288 to 2,675,064 SMc01952 Position (kb) 2672 2673 2674Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2672.139 kb on + strand, within SMc01950at 2672.157 kb on + strand, within SMc01950at 2672.157 kb on + strand, within SMc01950at 2672.158 kb on - strand, within SMc01950at 2672.158 kb on - strand, within SMc01950at 2672.160 kb on + strand, within SMc01950at 2672.161 kb on - strand, within SMc01950at 2672.161 kb on - strand, within SMc01950at 2672.209 kb on + strand, within SMc01950at 2672.209 kb on + strand, within SMc01950at 2672.209 kb on + strand, within SMc01950at 2672.209 kb on + strand, within SMc01950at 2672.210 kb on - strand, within SMc01950at 2672.445 kb on + strand, within SMc01950at 2672.446 kb on - strand, within SMc01950at 2672.446 kb on - strand, within SMc01950at 2672.469 kb on + strand, within SMc01950at 2672.470 kb on - strand, within SMc01950at 2672.484 kb on + strand, within SMc01950at 2672.485 kb on - strand, within SMc01950at 2672.496 kb on + strand, within SMc01950at 2672.559 kb on + strand, within SMc01950at 2672.559 kb on + strand, within SMc01950at 2672.559 kb on + strand, within SMc01950at 2672.560 kb on - strand, within SMc01950at 2672.560 kb on - strand, within SMc01950at 2672.640 kb on + strand, within SMc01950at 2672.641 kb on - strand, within SMc01950at 2672.641 kb on - strand, within SMc01950at 2672.992 kb on + strandat 2672.992 kb on + strandat 2672.992 kb on + strandat 2672.992 kb on + strandat 2672.992 kb on + strandat 2672.993 kb on - strandat 2672.993 kb on - strandat 2672.993 kb on - strandat 2672.995 kb on - strandat 2672.995 kb on - strandat 2673.082 kb on + strand, within SMc01951at 2673.082 kb on + strand, within SMc01951at 2673.239 kb on - strand, within SMc01951at 2673.241 kb on + strand, within SMc01951at 2673.241 kb on + strand, within SMc01951at 2673.241 kb on + strand, within SMc01951at 2673.242 kb on - strand, within SMc01951at 2673.250 kb on + strand, within SMc01951at 2673.251 kb on - strand, within SMc01951at 2673.302 kb on - strand, within SMc01951at 2673.400 kb on + strand, within SMc01951at 2673.400 kb on + strand, within SMc01951at 2673.400 kb on + strand, within SMc01951at 2673.400 kb on + strand, within SMc01951at 2673.482 kb on - strandat 2673.617 kb on - strand, within SMc01951at 2673.818 kb on + strandat 2673.886 kb on + strandat 2673.886 kb on + strandat 2673.887 kb on - strandat 2674.152 kb on + strandat 2674.152 kb on + strandat 2674.212 kb on + strandat 2674.212 kb on + strandat 2674.212 kb on + strandat 2674.212 kb on + strandat 2674.213 kb on - strandat 2674.298 kb on + strandat 2674.299 kb on - strandat 2674.299 kb on - strandat 2674.346 kb on - strandat 2674.370 kb on - strand, within SMc01952at 2674.599 kb on - strand, within SMc01952at 2674.599 kb on - strand, within SMc01952at 2674.630 kb on + strand, within SMc01952at 2674.630 kb on + strand, within SMc01952at 2674.631 kb on - strand, within SMc01952at 2674.631 kb on - strand, within SMc01952at 2674.631 kb on - strand, within SMc01952at 2674.654 kb on + strand, within SMc01952at 2674.765 kb on - strand, within SMc01952at 2674.888 kb on + strand, within SMc01952at 2674.888 kb on + strand, within SMc01952at 2674.889 kb on - strand, within SMc01952at 2674.889 kb on - strand, within SMc01952at 2674.889 kb on - strand, within SMc01952at 2674.889 kb on - strand, within SMc01952at 2674.889 kb on - strand, within SMc01952

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM
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2,672,139 + SMc01950 0.39 +0.2
2,672,157 + SMc01950 0.40 -0.6
2,672,157 + SMc01950 0.40 -0.7
2,672,158 - SMc01950 0.40 -0.2
2,672,158 - SMc01950 0.40 -0.7
2,672,160 + SMc01950 0.40 +0.1
2,672,161 - SMc01950 0.40 +3.1
2,672,161 - SMc01950 0.40 +0.8
2,672,209 + SMc01950 0.44 -0.8
2,672,209 + SMc01950 0.44 +2.1
2,672,209 + SMc01950 0.44 -0.6
2,672,209 + SMc01950 0.44 -0.9
2,672,210 - SMc01950 0.44 +0.7
2,672,445 + SMc01950 0.61 +0.2
2,672,446 - SMc01950 0.61 -1.8
2,672,446 - SMc01950 0.61 +0.9
2,672,469 + SMc01950 0.63 +0.0
2,672,470 - SMc01950 0.63 -0.6
2,672,484 + SMc01950 0.64 -0.1
2,672,485 - SMc01950 0.64 -0.3
2,672,496 + SMc01950 0.65 -0.1
2,672,559 + SMc01950 0.69 +1.1
2,672,559 + SMc01950 0.69 +0.1
2,672,559 + SMc01950 0.69 +0.3
2,672,560 - SMc01950 0.69 -1.0
2,672,560 - SMc01950 0.69 -0.2
2,672,640 + SMc01950 0.75 -0.4
2,672,641 - SMc01950 0.75 -0.8
2,672,641 - SMc01950 0.75 -1.0
2,672,992 + -0.3
2,672,992 + -0.0
2,672,992 + +0.1
2,672,992 + -0.2
2,672,992 + +1.1
2,672,993 - -0.4
2,672,993 - -0.8
2,672,993 - -0.2
2,672,995 - -1.5
2,672,995 - -0.3
2,673,082 + SMc01951 0.10 +0.7
2,673,082 + SMc01951 0.10 -0.3
2,673,239 - SMc01951 0.27 +0.1
2,673,241 + SMc01951 0.28 +1.4
2,673,241 + SMc01951 0.28 +0.3
2,673,241 + SMc01951 0.28 +2.1
2,673,242 - SMc01951 0.28 +1.1
2,673,250 + SMc01951 0.29 +1.0
2,673,251 - SMc01951 0.29 -0.3
2,673,302 - SMc01951 0.34 +0.2
2,673,400 + SMc01951 0.45 +0.7
2,673,400 + SMc01951 0.45 +0.1
2,673,400 + SMc01951 0.45 -0.0
2,673,400 + SMc01951 0.45 +1.1
2,673,482 - +0.1
2,673,617 - SMc01951 0.69 +1.2
2,673,818 + -1.1
2,673,886 + -0.3
2,673,886 + -2.0
2,673,887 - +0.8
2,674,152 + -1.1
2,674,152 + +0.2
2,674,212 + +0.5
2,674,212 + -0.0
2,674,212 + -0.8
2,674,212 + -0.5
2,674,213 - -0.4
2,674,298 + +0.3
2,674,299 - -0.5
2,674,299 - -0.5
2,674,346 - -0.0
2,674,370 - SMc01952 0.11 -0.2
2,674,599 - SMc01952 0.40 +0.4
2,674,599 - SMc01952 0.40 -0.3
2,674,630 + SMc01952 0.44 +0.1
2,674,630 + SMc01952 0.44 +0.3
2,674,631 - SMc01952 0.44 +2.1
2,674,631 - SMc01952 0.44 +0.5
2,674,631 - SMc01952 0.44 -0.6
2,674,654 + SMc01952 0.47 +0.1
2,674,765 - SMc01952 0.61 +0.1
2,674,888 + SMc01952 0.77 -0.1
2,674,888 + SMc01952 0.77 -0.5
2,674,889 - SMc01952 0.77 +0.0
2,674,889 - SMc01952 0.77 +0.7
2,674,889 - SMc01952 0.77 +2.1
2,674,889 - SMc01952 0.77 +0.2
2,674,889 - SMc01952 0.77 -0.1

Or see this region's nucleotide sequence