Strain Fitness in Sinorhizobium meliloti 1021 around SMc00760

Experiment: 3-octanone 2.655166667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00475 and SMc00760 are separated by 239 nucleotidesSMc00760 and SMc00473 are separated by 333 nucleotides SMc00475: SMc00475 - alanyl-tRNA synthetase, at 1,945,275 to 1,947,938 SMc00475 SMc00760: SMc00760 - recombinase A, at 1,948,178 to 1,949,263 SMc00760 SMc00473: SMc00473 - carbohydrate kinase, at 1,949,597 to 1,950,556 SMc00473 Position (kb) 1948 1949 1950Strain fitness (log2 ratio) -1 0 1 2at 1947.949 kb on - strandat 1947.949 kb on - strandat 1947.949 kb on - strandat 1947.949 kb on - strandat 1947.949 kb on - strandat 1947.949 kb on - strandat 1947.957 kb on - strandat 1947.957 kb on - strandat 1947.957 kb on - strandat 1948.082 kb on - strandat 1948.082 kb on - strandat 1948.082 kb on - strandat 1948.093 kb on - strandat 1948.179 kb on + strandat 1948.353 kb on + strand, within SMc00760at 1948.353 kb on + strand, within SMc00760at 1948.353 kb on + strand, within SMc00760at 1948.441 kb on - strand, within SMc00760at 1948.580 kb on + strand, within SMc00760at 1948.923 kb on + strand, within SMc00760at 1948.923 kb on + strand, within SMc00760at 1949.037 kb on + strand, within SMc00760at 1949.038 kb on - strand, within SMc00760at 1949.038 kb on - strand, within SMc00760at 1949.129 kb on + strand, within SMc00760at 1949.275 kb on + strandat 1949.275 kb on + strandat 1949.276 kb on - strandat 1949.276 kb on - strandat 1949.422 kb on + strandat 1949.422 kb on + strandat 1949.521 kb on - strandat 1949.521 kb on - strandat 1949.533 kb on + strandat 1949.533 kb on + strandat 1949.533 kb on + strandat 1949.647 kb on + strandat 1949.891 kb on + strand, within SMc00473at 1949.892 kb on - strand, within SMc00473at 1949.892 kb on - strand, within SMc00473at 1949.893 kb on + strand, within SMc00473at 1949.893 kb on + strand, within SMc00473at 1949.893 kb on + strand, within SMc00473at 1949.951 kb on + strand, within SMc00473at 1949.951 kb on + strand, within SMc00473at 1949.952 kb on - strand, within SMc00473at 1949.952 kb on - strand, within SMc00473

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM
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1,947,949 - +0.6
1,947,949 - +0.5
1,947,949 - -0.2
1,947,949 - -0.1
1,947,949 - -0.2
1,947,949 - -0.6
1,947,957 - -0.1
1,947,957 - +0.9
1,947,957 - -0.9
1,948,082 - -0.7
1,948,082 - -0.4
1,948,082 - -0.5
1,948,093 - +1.1
1,948,179 + -0.3
1,948,353 + SMc00760 0.16 -1.6
1,948,353 + SMc00760 0.16 +0.9
1,948,353 + SMc00760 0.16 -0.7
1,948,441 - SMc00760 0.24 +0.1
1,948,580 + SMc00760 0.37 -0.2
1,948,923 + SMc00760 0.69 -1.2
1,948,923 + SMc00760 0.69 -0.9
1,949,037 + SMc00760 0.79 +1.1
1,949,038 - SMc00760 0.79 -0.9
1,949,038 - SMc00760 0.79 -1.3
1,949,129 + SMc00760 0.88 -0.7
1,949,275 + +0.1
1,949,275 + +1.1
1,949,276 - +1.8
1,949,276 - +0.1
1,949,422 + -0.2
1,949,422 + -0.1
1,949,521 - +0.5
1,949,521 - +1.5
1,949,533 + -0.1
1,949,533 + -0.7
1,949,533 + +0.1
1,949,647 + +0.3
1,949,891 + SMc00473 0.31 +0.3
1,949,892 - SMc00473 0.31 -0.2
1,949,892 - SMc00473 0.31 +0.2
1,949,893 + SMc00473 0.31 -0.0
1,949,893 + SMc00473 0.31 +0.2
1,949,893 + SMc00473 0.31 +0.4
1,949,951 + SMc00473 0.37 +0.3
1,949,951 + SMc00473 0.37 -0.9
1,949,952 - SMc00473 0.37 -0.2
1,949,952 - SMc00473 0.37 +1.0

Or see this region's nucleotide sequence