Experiment: 3-octanone 2.655166667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2145 and SMa5035 are separated by 376 nucleotides SMa5035 and SMa2147 overlap by 407 nucleotides SMa2147 and SMa2151 are separated by 712 nucleotides
SMa2145: SMa2145 - glycine cleavage system protein T, at 1,212,031 to 1,213,287
SMa2145
SMa5035: SMa5035 - hypothetical protein, at 1,213,664 to 1,214,104
SMa5035
SMa2147: SMa2147 - hypothetical protein, at 1,213,698 to 1,214,588
SMa2147
SMa2151: SMa2151 - DNA-binding protein, at 1,215,301 to 1,215,624
SMa2151
Position (kb)
1213
1214
1215 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1212.803 kb on - strand, within SMa2145 at 1212.818 kb on + strand, within SMa2145 at 1212.819 kb on - strand, within SMa2145 at 1212.909 kb on + strand, within SMa2145 at 1212.910 kb on - strand, within SMa2145 at 1212.910 kb on - strand, within SMa2145 at 1212.951 kb on - strand, within SMa2145 at 1212.977 kb on + strand, within SMa2145 at 1212.981 kb on - strand, within SMa2145 at 1213.064 kb on + strand, within SMa2145 at 1213.064 kb on + strand, within SMa2145 at 1213.291 kb on + strand at 1213.292 kb on - strand at 1213.292 kb on - strand at 1213.292 kb on - strand at 1213.479 kb on - strand at 1213.479 kb on - strand at 1213.509 kb on + strand at 1213.509 kb on + strand at 1213.561 kb on - strand at 1213.585 kb on + strand at 1213.586 kb on - strand at 1213.591 kb on - strand at 1213.665 kb on + strand at 1214.184 kb on - strand, within SMa2147 at 1214.184 kb on - strand, within SMa2147 at 1214.267 kb on + strand, within SMa2147 at 1214.268 kb on - strand, within SMa2147 at 1214.268 kb on - strand, within SMa2147 at 1214.268 kb on - strand, within SMa2147 at 1214.268 kb on - strand, within SMa2147 at 1214.272 kb on + strand, within SMa2147 at 1214.273 kb on - strand, within SMa2147 at 1214.273 kb on - strand, within SMa2147 at 1214.273 kb on - strand, within SMa2147 at 1214.273 kb on - strand, within SMa2147 at 1214.273 kb on - strand, within SMa2147 at 1214.363 kb on - strand, within SMa2147 at 1214.384 kb on + strand, within SMa2147 at 1214.384 kb on + strand, within SMa2147 at 1214.520 kb on + strand at 1214.521 kb on - strand at 1214.751 kb on + strand at 1214.752 kb on - strand at 1214.773 kb on + strand at 1214.774 kb on - strand at 1214.788 kb on + strand at 1214.788 kb on + strand at 1214.789 kb on - strand at 1214.789 kb on - strand at 1214.886 kb on + strand at 1214.887 kb on - strand at 1214.899 kb on + strand at 1214.900 kb on - strand at 1214.931 kb on - strand at 1215.153 kb on - strand at 1215.167 kb on + strand at 1215.168 kb on - strand at 1215.287 kb on - strand at 1215.367 kb on + strand, within SMa2151 at 1215.367 kb on + strand, within SMa2151 at 1215.367 kb on + strand, within SMa2151 at 1215.368 kb on - strand, within SMa2151 at 1215.368 kb on - strand, within SMa2151 at 1215.368 kb on - strand, within SMa2151
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM remove 1,212,803 - SMa2145 0.61 -0.1 1,212,818 + SMa2145 0.63 -0.4 1,212,819 - SMa2145 0.63 -0.9 1,212,909 + SMa2145 0.70 -0.2 1,212,910 - SMa2145 0.70 +0.1 1,212,910 - SMa2145 0.70 -0.7 1,212,951 - SMa2145 0.73 +1.5 1,212,977 + SMa2145 0.75 -0.4 1,212,981 - SMa2145 0.76 +0.2 1,213,064 + SMa2145 0.82 +0.3 1,213,064 + SMa2145 0.82 -0.4 1,213,291 + -0.5 1,213,292 - +0.0 1,213,292 - -0.2 1,213,292 - +0.3 1,213,479 - -0.5 1,213,479 - +1.7 1,213,509 + -0.0 1,213,509 + +1.0 1,213,561 - -2.8 1,213,585 + +0.0 1,213,586 - -0.3 1,213,591 - +0.2 1,213,665 + +0.1 1,214,184 - SMa2147 0.55 -0.9 1,214,184 - SMa2147 0.55 -0.4 1,214,267 + SMa2147 0.64 +1.4 1,214,268 - SMa2147 0.64 -1.0 1,214,268 - SMa2147 0.64 -0.1 1,214,268 - SMa2147 0.64 -0.5 1,214,268 - SMa2147 0.64 -0.3 1,214,272 + SMa2147 0.64 +0.5 1,214,273 - SMa2147 0.65 -1.6 1,214,273 - SMa2147 0.65 -0.2 1,214,273 - SMa2147 0.65 -1.0 1,214,273 - SMa2147 0.65 +0.0 1,214,273 - SMa2147 0.65 -0.1 1,214,363 - SMa2147 0.75 -1.1 1,214,384 + SMa2147 0.77 -1.4 1,214,384 + SMa2147 0.77 +1.2 1,214,520 + -0.3 1,214,521 - +0.8 1,214,751 + +0.3 1,214,752 - -0.6 1,214,773 + +0.1 1,214,774 - -0.4 1,214,788 + -0.6 1,214,788 + +0.1 1,214,789 - -1.2 1,214,789 - +0.2 1,214,886 + +0.2 1,214,887 - +0.2 1,214,899 + -0.5 1,214,900 - -2.4 1,214,931 - -0.2 1,215,153 - +1.0 1,215,167 + -0.6 1,215,168 - +0.8 1,215,287 - -0.0 1,215,367 + SMa2151 0.20 +0.2 1,215,367 + SMa2151 0.20 +1.0 1,215,367 + SMa2151 0.20 -0.2 1,215,368 - SMa2151 0.21 +2.0 1,215,368 - SMa2151 0.21 +1.0 1,215,368 - SMa2151 0.21 +1.0
Or see this region's nucleotide sequence