Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21081

Experiment: 3-octanone 2.655166667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21080 and SM_b21081 are separated by 36 nucleotidesSM_b21081 and SM_b21082 are separated by 31 nucleotides SM_b21080: SM_b21080 - response regulator protein, at 717,545 to 718,369 _b21080 SM_b21081: SM_b21081 - phosphoglucomutase phosphomannomutase, at 718,406 to 719,953 _b21081 SM_b21082: SM_b21082 - mannose-6-phosphate isomerase, GDP-mannose pyrophosphorylase, at 719,985 to 722,288 _b21082 Position (kb) 718 719 720Strain fitness (log2 ratio) -2 -1 0 1 2at 717.543 kb on + strandat 717.562 kb on + strandat 717.613 kb on + strandat 717.614 kb on - strandat 717.643 kb on + strandat 717.643 kb on + strand, within SM_b21080at 717.643 kb on + strand, within SM_b21080at 717.646 kb on + strand, within SM_b21080at 717.646 kb on + strand, within SM_b21080at 717.658 kb on + strand, within SM_b21080at 717.658 kb on + strand, within SM_b21080at 717.659 kb on - strand, within SM_b21080at 717.748 kb on + strand, within SM_b21080at 717.765 kb on + strand, within SM_b21080at 717.766 kb on - strand, within SM_b21080at 717.986 kb on + strand, within SM_b21080at 717.986 kb on + strand, within SM_b21080at 717.986 kb on + strand, within SM_b21080at 717.987 kb on - strand, within SM_b21080at 717.987 kb on - strand, within SM_b21080at 717.987 kb on - strand, within SM_b21080at 717.987 kb on - strand, within SM_b21080at 717.988 kb on + strand, within SM_b21080at 717.988 kb on + strand, within SM_b21080at 717.988 kb on + strand, within SM_b21080at 717.989 kb on - strand, within SM_b21080at 718.053 kb on + strand, within SM_b21080at 718.053 kb on + strand, within SM_b21080at 718.123 kb on + strand, within SM_b21080at 718.124 kb on - strand, within SM_b21080at 718.203 kb on - strand, within SM_b21080at 718.231 kb on - strand, within SM_b21080at 718.292 kb on + strandat 718.292 kb on + strandat 718.293 kb on - strandat 718.293 kb on - strandat 718.293 kb on - strandat 718.293 kb on - strandat 718.306 kb on + strandat 718.368 kb on - strandat 718.474 kb on + strandat 718.475 kb on - strandat 718.478 kb on + strandat 718.520 kb on + strandat 718.520 kb on + strandat 718.521 kb on - strandat 718.573 kb on + strand, within SM_b21081at 718.574 kb on - strand, within SM_b21081at 718.673 kb on + strand, within SM_b21081at 718.674 kb on - strand, within SM_b21081at 718.766 kb on + strand, within SM_b21081at 718.949 kb on + strand, within SM_b21081at 718.949 kb on + strand, within SM_b21081at 718.979 kb on + strand, within SM_b21081at 719.142 kb on - strand, within SM_b21081at 719.142 kb on - strand, within SM_b21081at 719.143 kb on + strand, within SM_b21081at 719.144 kb on - strand, within SM_b21081at 719.314 kb on + strand, within SM_b21081at 719.418 kb on - strand, within SM_b21081at 719.438 kb on + strand, within SM_b21081at 719.438 kb on + strand, within SM_b21081at 719.438 kb on + strand, within SM_b21081at 719.439 kb on - strand, within SM_b21081at 719.439 kb on - strand, within SM_b21081at 719.439 kb on - strand, within SM_b21081at 719.528 kb on + strand, within SM_b21081at 719.528 kb on + strand, within SM_b21081at 719.907 kb on + strandat 719.936 kb on + strandat 719.952 kb on - strandat 720.257 kb on + strand, within SM_b21082at 720.322 kb on + strand, within SM_b21082at 720.322 kb on + strand, within SM_b21082at 720.323 kb on - strand, within SM_b21082at 720.372 kb on - strand, within SM_b21082at 720.389 kb on - strand, within SM_b21082at 720.453 kb on + strand, within SM_b21082at 720.453 kb on + strand, within SM_b21082at 720.459 kb on + strand, within SM_b21082at 720.460 kb on - strand, within SM_b21082at 720.460 kb on - strand, within SM_b21082at 720.463 kb on + strand, within SM_b21082at 720.463 kb on + strand, within SM_b21082at 720.540 kb on + strand, within SM_b21082at 720.541 kb on - strand, within SM_b21082at 720.541 kb on - strand, within SM_b21082at 720.541 kb on - strand, within SM_b21082at 720.541 kb on - strand, within SM_b21082at 720.690 kb on + strand, within SM_b21082at 720.690 kb on + strand, within SM_b21082at 720.691 kb on - strand, within SM_b21082at 720.691 kb on - strand, within SM_b21082at 720.691 kb on - strand, within SM_b21082at 720.739 kb on - strand, within SM_b21082at 720.739 kb on - strand, within SM_b21082at 720.790 kb on - strand, within SM_b21082at 720.828 kb on - strand, within SM_b21082at 720.837 kb on - strand, within SM_b21082at 720.898 kb on - strand, within SM_b21082

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM
remove
717,543 + -0.6
717,562 + +0.4
717,613 + -2.1
717,614 - +0.0
717,643 + +0.0
717,643 + SM_b21080 0.12 -0.4
717,643 + SM_b21080 0.12 +0.7
717,646 + SM_b21080 0.12 -1.1
717,646 + SM_b21080 0.12 -1.0
717,658 + SM_b21080 0.14 -0.4
717,658 + SM_b21080 0.14 +0.3
717,659 - SM_b21080 0.14 +2.0
717,748 + SM_b21080 0.25 +0.1
717,765 + SM_b21080 0.27 -0.1
717,766 - SM_b21080 0.27 +0.7
717,986 + SM_b21080 0.53 -0.4
717,986 + SM_b21080 0.53 -1.8
717,986 + SM_b21080 0.53 +0.2
717,987 - SM_b21080 0.54 +2.0
717,987 - SM_b21080 0.54 +0.8
717,987 - SM_b21080 0.54 +1.4
717,987 - SM_b21080 0.54 +0.9
717,988 + SM_b21080 0.54 -0.7
717,988 + SM_b21080 0.54 +0.3
717,988 + SM_b21080 0.54 +0.6
717,989 - SM_b21080 0.54 -0.3
718,053 + SM_b21080 0.62 +0.2
718,053 + SM_b21080 0.62 -0.3
718,123 + SM_b21080 0.70 +0.0
718,124 - SM_b21080 0.70 -1.0
718,203 - SM_b21080 0.80 +0.3
718,231 - SM_b21080 0.83 +0.7
718,292 + +0.2
718,292 + +0.1
718,293 - +0.2
718,293 - -0.9
718,293 - +0.3
718,293 - -0.7
718,306 + -0.4
718,368 - +0.5
718,474 + -0.7
718,475 - +0.0
718,478 + -0.4
718,520 + -0.5
718,520 + +0.5
718,521 - -0.5
718,573 + SM_b21081 0.11 -0.2
718,574 - SM_b21081 0.11 +1.3
718,673 + SM_b21081 0.17 -0.8
718,674 - SM_b21081 0.17 -0.9
718,766 + SM_b21081 0.23 +0.4
718,949 + SM_b21081 0.35 -1.1
718,949 + SM_b21081 0.35 -0.7
718,979 + SM_b21081 0.37 +0.3
719,142 - SM_b21081 0.48 +1.0
719,142 - SM_b21081 0.48 +1.0
719,143 + SM_b21081 0.48 +0.2
719,144 - SM_b21081 0.48 -0.6
719,314 + SM_b21081 0.59 -0.1
719,418 - SM_b21081 0.65 +0.0
719,438 + SM_b21081 0.67 +0.2
719,438 + SM_b21081 0.67 +0.0
719,438 + SM_b21081 0.67 +0.7
719,439 - SM_b21081 0.67 -0.4
719,439 - SM_b21081 0.67 -0.1
719,439 - SM_b21081 0.67 -0.2
719,528 + SM_b21081 0.72 +0.1
719,528 + SM_b21081 0.72 -0.4
719,907 + -0.3
719,936 + -0.5
719,952 - -0.4
720,257 + SM_b21082 0.12 +0.1
720,322 + SM_b21082 0.15 -1.3
720,322 + SM_b21082 0.15 +0.6
720,323 - SM_b21082 0.15 +0.6
720,372 - SM_b21082 0.17 +0.2
720,389 - SM_b21082 0.18 +1.4
720,453 + SM_b21082 0.20 +0.5
720,453 + SM_b21082 0.20 -0.3
720,459 + SM_b21082 0.21 +0.6
720,460 - SM_b21082 0.21 +0.2
720,460 - SM_b21082 0.21 -0.4
720,463 + SM_b21082 0.21 +0.6
720,463 + SM_b21082 0.21 +0.2
720,540 + SM_b21082 0.24 -0.1
720,541 - SM_b21082 0.24 +2.0
720,541 - SM_b21082 0.24 -0.8
720,541 - SM_b21082 0.24 -0.2
720,541 - SM_b21082 0.24 +0.6
720,690 + SM_b21082 0.31 -0.2
720,690 + SM_b21082 0.31 +0.2
720,691 - SM_b21082 0.31 +1.3
720,691 - SM_b21082 0.31 -1.0
720,691 - SM_b21082 0.31 -0.7
720,739 - SM_b21082 0.33 -0.9
720,739 - SM_b21082 0.33 +1.7
720,790 - SM_b21082 0.35 -0.2
720,828 - SM_b21082 0.37 +0.7
720,837 - SM_b21082 0.37 +0.4
720,898 - SM_b21082 0.40 +0.6

Or see this region's nucleotide sequence