Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21046

Experiment: 3-octanone 2.655166667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21045 and SM_b21046 are separated by 95 nucleotides SM_b21045: SM_b21045 - reverse transcriptasematurase, at 675,573 to 676,832 _b21045 SM_b21046: SM_b21046 - transposase of insertion sequence ISRm10-1, orfB C-terminus protein, at 676,928 to 677,401 _b21046 Position (kb) 676 677 678Strain fitness (log2 ratio) -2 -1 0 1 2 3at 677.090 kb on + strand, within SM_b21046at 677.137 kb on - strand, within SM_b21046at 677.209 kb on + strand, within SM_b21046at 677.209 kb on + strand, within SM_b21046at 677.209 kb on + strand, within SM_b21046at 677.209 kb on + strand, within SM_b21046at 677.210 kb on - strand, within SM_b21046at 677.228 kb on - strand, within SM_b21046at 677.369 kb on + strandat 677.369 kb on + strandat 677.369 kb on + strandat 677.369 kb on + strandat 677.387 kb on + strandat 677.415 kb on + strandat 677.416 kb on - strandat 677.416 kb on - strandat 677.416 kb on - strandat 677.516 kb on + strandat 677.516 kb on + strandat 677.526 kb on + strandat 677.566 kb on + strandat 677.573 kb on + strandat 677.596 kb on + strandat 677.596 kb on + strandat 677.597 kb on - strandat 677.597 kb on - strandat 677.597 kb on - strandat 677.721 kb on + strandat 677.722 kb on - strandat 677.890 kb on + strandat 677.946 kb on - strandat 677.949 kb on + strandat 677.949 kb on + strandat 677.949 kb on + strandat 677.949 kb on + strandat 677.949 kb on + strandat 677.950 kb on - strandat 678.095 kb on + strandat 678.095 kb on + strandat 678.096 kb on - strandat 678.206 kb on + strandat 678.215 kb on - strandat 678.360 kb on + strandat 678.360 kb on + strandat 678.372 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM
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677,090 + SM_b21046 0.34 -0.9
677,137 - SM_b21046 0.44 -0.7
677,209 + SM_b21046 0.59 +1.0
677,209 + SM_b21046 0.59 +1.3
677,209 + SM_b21046 0.59 -0.7
677,209 + SM_b21046 0.59 +0.2
677,210 - SM_b21046 0.59 -0.3
677,228 - SM_b21046 0.63 -1.8
677,369 + +0.6
677,369 + -0.8
677,369 + +0.8
677,369 + +0.6
677,387 + -0.1
677,415 + -0.2
677,416 - +1.1
677,416 - -0.3
677,416 - -0.0
677,516 + -2.2
677,516 + -0.8
677,526 + -0.1
677,566 + +3.0
677,573 + +0.1
677,596 + +0.6
677,596 + -0.8
677,597 - -0.4
677,597 - -0.4
677,597 - -0.5
677,721 + +1.0
677,722 - -0.5
677,890 + -0.8
677,946 - +0.2
677,949 + +0.1
677,949 + +0.0
677,949 + +0.8
677,949 + -0.0
677,949 + +0.1
677,950 - -0.1
678,095 + -0.2
678,095 + -2.4
678,096 - -0.4
678,206 + -1.1
678,215 - -0.1
678,360 + -1.5
678,360 + +1.0
678,372 - -0.5

Or see this region's nucleotide sequence