Experiment: 3-octanone 2.655166667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20626 and SM_b20627 are separated by 34 nucleotides SM_b20627 and SM_b20628 overlap by 4 nucleotides SM_b20628 and SM_b20629 are separated by 85 nucleotides SM_b20629 and SM_b20630 are separated by 74 nucleotides
SM_b20626: SM_b20626 - AraC family transcriptional regulator, at 1,646,885 to 1,647,871
_b20626
SM_b20627: SM_b20627 - hypothetical protein, at 1,647,906 to 1,648,214
_b20627
SM_b20628: SM_b20628 - hypothetical protein, at 1,648,211 to 1,648,480
_b20628
SM_b20629: SM_b20629 - hypothetical protein, at 1,648,566 to 1,648,844
_b20629
SM_b20630: SM_b20630 - sugar uptake ABC transporter ATP-binding protein, at 1,648,919 to 1,650,004
_b20630
Position (kb) 1648
1649 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1647.215 kb on + strand, within SM_b20626 at 1647.321 kb on + strand, within SM_b20626 at 1647.368 kb on - strand, within SM_b20626 at 1647.368 kb on - strand, within SM_b20626 at 1647.368 kb on - strand, within SM_b20626 at 1647.891 kb on + strand at 1647.891 kb on + strand at 1648.001 kb on - strand, within SM_b20627 at 1648.009 kb on - strand, within SM_b20627 at 1648.009 kb on - strand, within SM_b20627 at 1648.009 kb on - strand, within SM_b20627 at 1648.013 kb on - strand, within SM_b20627 at 1648.013 kb on - strand, within SM_b20627 at 1648.040 kb on - strand, within SM_b20627 at 1648.315 kb on + strand, within SM_b20628 at 1648.359 kb on + strand, within SM_b20628 at 1648.359 kb on + strand, within SM_b20628 at 1648.359 kb on + strand, within SM_b20628 at 1648.360 kb on - strand, within SM_b20628 at 1648.368 kb on - strand, within SM_b20628 at 1648.437 kb on - strand at 1648.437 kb on - strand, within SM_b20628 at 1648.437 kb on - strand, within SM_b20628 at 1648.462 kb on + strand at 1648.462 kb on + strand at 1648.463 kb on - strand at 1648.481 kb on - strand at 1648.481 kb on - strand at 1648.505 kb on + strand at 1648.505 kb on + strand at 1648.505 kb on + strand at 1648.600 kb on + strand, within SM_b20629 at 1648.622 kb on + strand, within SM_b20629 at 1648.623 kb on - strand, within SM_b20629 at 1648.623 kb on - strand, within SM_b20629 at 1648.746 kb on + strand, within SM_b20629 at 1648.746 kb on + strand, within SM_b20629 at 1648.763 kb on + strand, within SM_b20629 at 1648.808 kb on + strand, within SM_b20629 at 1649.058 kb on + strand, within SM_b20630 at 1649.058 kb on + strand, within SM_b20630 at 1649.059 kb on - strand, within SM_b20630 at 1649.059 kb on - strand, within SM_b20630 at 1649.083 kb on - strand, within SM_b20630 at 1649.154 kb on - strand, within SM_b20630 at 1649.323 kb on - strand, within SM_b20630 at 1649.421 kb on + strand, within SM_b20630 at 1649.421 kb on + strand, within SM_b20630
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM remove 1,647,215 + SM_b20626 0.33 -0.5 1,647,321 + SM_b20626 0.44 -0.2 1,647,368 - SM_b20626 0.49 +0.1 1,647,368 - SM_b20626 0.49 +2.0 1,647,368 - SM_b20626 0.49 +1.4 1,647,891 + -0.1 1,647,891 + -0.4 1,648,001 - SM_b20627 0.31 +1.0 1,648,009 - SM_b20627 0.33 +0.5 1,648,009 - SM_b20627 0.33 +0.4 1,648,009 - SM_b20627 0.33 -0.0 1,648,013 - SM_b20627 0.35 -0.2 1,648,013 - SM_b20627 0.35 -0.1 1,648,040 - SM_b20627 0.43 -0.1 1,648,315 + SM_b20628 0.39 +0.8 1,648,359 + SM_b20628 0.55 +1.0 1,648,359 + SM_b20628 0.55 +0.6 1,648,359 + SM_b20628 0.55 +2.0 1,648,360 - SM_b20628 0.55 +0.1 1,648,368 - SM_b20628 0.58 +0.4 1,648,437 - -0.0 1,648,437 - SM_b20628 0.84 +1.4 1,648,437 - SM_b20628 0.84 +0.7 1,648,462 + +0.7 1,648,462 + +0.2 1,648,463 - -0.1 1,648,481 - -0.2 1,648,481 - -0.1 1,648,505 + +0.1 1,648,505 + -2.2 1,648,505 + +1.6 1,648,600 + SM_b20629 0.12 -0.3 1,648,622 + SM_b20629 0.20 +0.4 1,648,623 - SM_b20629 0.20 +0.1 1,648,623 - SM_b20629 0.20 +0.6 1,648,746 + SM_b20629 0.65 +0.6 1,648,746 + SM_b20629 0.65 +1.0 1,648,763 + SM_b20629 0.71 -0.3 1,648,808 + SM_b20629 0.87 -0.7 1,649,058 + SM_b20630 0.13 -0.4 1,649,058 + SM_b20630 0.13 +0.4 1,649,059 - SM_b20630 0.13 +0.4 1,649,059 - SM_b20630 0.13 +0.2 1,649,083 - SM_b20630 0.15 -0.0 1,649,154 - SM_b20630 0.22 -0.3 1,649,323 - SM_b20630 0.37 +0.1 1,649,421 + SM_b20630 0.46 +0.3 1,649,421 + SM_b20630 0.46 +0.2
Or see this region's nucleotide sequence