Experiment: 3-octanone 2.655166667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2143 and SMa2145 are separated by 55 nucleotides SMa2145 and SMa5035 are separated by 376 nucleotides SMa5035 and SMa2147 overlap by 407 nucleotides
SMa2143: SMa2143 - 5,10-methylenetetrahydrofolate reductase, at 1,211,022 to 1,211,975
SMa2143
SMa2145: SMa2145 - glycine cleavage system protein T, at 1,212,031 to 1,213,287
SMa2145
SMa5035: SMa5035 - hypothetical protein, at 1,213,664 to 1,214,104
SMa5035
SMa2147: SMa2147 - hypothetical protein, at 1,213,698 to 1,214,588
SMa2147
Position (kb)
1212
1213
1214 Strain fitness (log2 ratio)
-1
0
1
2 at 1211.132 kb on + strand, within SMa2143 at 1211.133 kb on - strand, within SMa2143 at 1211.221 kb on - strand, within SMa2143 at 1211.221 kb on - strand, within SMa2143 at 1211.278 kb on - strand, within SMa2143 at 1211.435 kb on + strand, within SMa2143 at 1211.517 kb on - strand, within SMa2143 at 1211.647 kb on + strand, within SMa2143 at 1211.647 kb on + strand, within SMa2143 at 1211.648 kb on - strand, within SMa2143 at 1211.712 kb on - strand, within SMa2143 at 1211.848 kb on - strand, within SMa2143 at 1211.886 kb on - strand at 1212.029 kb on - strand at 1212.250 kb on + strand, within SMa2145 at 1212.258 kb on - strand, within SMa2145 at 1212.362 kb on + strand, within SMa2145 at 1212.511 kb on - strand, within SMa2145 at 1212.511 kb on - strand, within SMa2145 at 1212.511 kb on - strand, within SMa2145 at 1212.513 kb on - strand, within SMa2145 at 1212.513 kb on - strand, within SMa2145 at 1212.544 kb on + strand, within SMa2145 at 1212.545 kb on - strand, within SMa2145 at 1212.589 kb on - strand, within SMa2145 at 1212.803 kb on - strand, within SMa2145 at 1212.818 kb on + strand, within SMa2145 at 1212.819 kb on - strand, within SMa2145 at 1212.909 kb on + strand, within SMa2145 at 1212.910 kb on - strand, within SMa2145 at 1212.910 kb on - strand, within SMa2145 at 1212.951 kb on - strand, within SMa2145 at 1212.977 kb on + strand, within SMa2145 at 1212.981 kb on - strand, within SMa2145 at 1213.064 kb on + strand, within SMa2145 at 1213.064 kb on + strand, within SMa2145 at 1213.291 kb on + strand at 1213.292 kb on - strand at 1213.292 kb on - strand at 1213.292 kb on - strand at 1213.479 kb on - strand at 1213.479 kb on - strand at 1213.509 kb on + strand at 1213.509 kb on + strand at 1213.561 kb on - strand at 1213.585 kb on + strand at 1213.586 kb on - strand at 1213.591 kb on - strand at 1213.665 kb on + strand at 1214.184 kb on - strand, within SMa2147 at 1214.184 kb on - strand, within SMa2147 at 1214.267 kb on + strand, within SMa2147 at 1214.268 kb on - strand, within SMa2147 at 1214.268 kb on - strand, within SMa2147 at 1214.268 kb on - strand, within SMa2147 at 1214.268 kb on - strand, within SMa2147 at 1214.272 kb on + strand, within SMa2147 at 1214.273 kb on - strand, within SMa2147 at 1214.273 kb on - strand, within SMa2147 at 1214.273 kb on - strand, within SMa2147 at 1214.273 kb on - strand, within SMa2147 at 1214.273 kb on - strand, within SMa2147
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM remove 1,211,132 + SMa2143 0.12 -1.5 1,211,133 - SMa2143 0.12 -0.9 1,211,221 - SMa2143 0.21 -0.7 1,211,221 - SMa2143 0.21 -0.3 1,211,278 - SMa2143 0.27 +1.3 1,211,435 + SMa2143 0.43 -0.3 1,211,517 - SMa2143 0.52 +0.8 1,211,647 + SMa2143 0.66 -0.5 1,211,647 + SMa2143 0.66 -1.2 1,211,648 - SMa2143 0.66 -0.7 1,211,712 - SMa2143 0.72 +1.8 1,211,848 - SMa2143 0.87 +0.8 1,211,886 - +0.2 1,212,029 - +0.0 1,212,250 + SMa2145 0.17 -0.1 1,212,258 - SMa2145 0.18 -0.2 1,212,362 + SMa2145 0.26 +0.9 1,212,511 - SMa2145 0.38 -0.3 1,212,511 - SMa2145 0.38 +0.3 1,212,511 - SMa2145 0.38 -0.5 1,212,513 - SMa2145 0.38 +0.6 1,212,513 - SMa2145 0.38 -0.2 1,212,544 + SMa2145 0.41 -0.4 1,212,545 - SMa2145 0.41 -0.5 1,212,589 - SMa2145 0.44 -0.1 1,212,803 - SMa2145 0.61 +0.2 1,212,818 + SMa2145 0.63 -0.1 1,212,819 - SMa2145 0.63 +0.7 1,212,909 + SMa2145 0.70 +1.1 1,212,910 - SMa2145 0.70 +0.2 1,212,910 - SMa2145 0.70 +1.5 1,212,951 - SMa2145 0.73 +1.3 1,212,977 + SMa2145 0.75 +0.7 1,212,981 - SMa2145 0.76 +0.5 1,213,064 + SMa2145 0.82 +0.9 1,213,064 + SMa2145 0.82 -0.3 1,213,291 + +0.0 1,213,292 - -0.2 1,213,292 - -0.3 1,213,292 - -0.8 1,213,479 - -0.2 1,213,479 - +1.8 1,213,509 + -1.2 1,213,509 + +0.3 1,213,561 - -0.4 1,213,585 + -1.7 1,213,586 - +0.5 1,213,591 - +0.5 1,213,665 + -0.8 1,214,184 - SMa2147 0.55 +0.3 1,214,184 - SMa2147 0.55 -0.6 1,214,267 + SMa2147 0.64 +1.7 1,214,268 - SMa2147 0.64 +1.4 1,214,268 - SMa2147 0.64 -0.9 1,214,268 - SMa2147 0.64 -0.5 1,214,268 - SMa2147 0.64 -0.1 1,214,272 + SMa2147 0.64 -0.7 1,214,273 - SMa2147 0.65 +0.1 1,214,273 - SMa2147 0.65 -0.7 1,214,273 - SMa2147 0.65 +0.4 1,214,273 - SMa2147 0.65 +1.4 1,214,273 - SMa2147 0.65 +0.1
Or see this region's nucleotide sequence