Strain Fitness in Sinorhizobium meliloti 1021 around SMa2145

Experiment: 3-octanone 2.655166667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2143 and SMa2145 are separated by 55 nucleotidesSMa2145 and SMa5035 are separated by 376 nucleotidesSMa5035 and SMa2147 overlap by 407 nucleotides SMa2143: SMa2143 - 5,10-methylenetetrahydrofolate reductase, at 1,211,022 to 1,211,975 SMa2143 SMa2145: SMa2145 - glycine cleavage system protein T, at 1,212,031 to 1,213,287 SMa2145 SMa5035: SMa5035 - hypothetical protein, at 1,213,664 to 1,214,104 SMa5035 SMa2147: SMa2147 - hypothetical protein, at 1,213,698 to 1,214,588 SMa2147 Position (kb) 1212 1213 1214Strain fitness (log2 ratio) -1 0 1 2at 1211.132 kb on + strand, within SMa2143at 1211.133 kb on - strand, within SMa2143at 1211.221 kb on - strand, within SMa2143at 1211.221 kb on - strand, within SMa2143at 1211.278 kb on - strand, within SMa2143at 1211.435 kb on + strand, within SMa2143at 1211.517 kb on - strand, within SMa2143at 1211.647 kb on + strand, within SMa2143at 1211.647 kb on + strand, within SMa2143at 1211.648 kb on - strand, within SMa2143at 1211.712 kb on - strand, within SMa2143at 1211.848 kb on - strand, within SMa2143at 1211.886 kb on - strandat 1212.029 kb on - strandat 1212.250 kb on + strand, within SMa2145at 1212.258 kb on - strand, within SMa2145at 1212.362 kb on + strand, within SMa2145at 1212.511 kb on - strand, within SMa2145at 1212.511 kb on - strand, within SMa2145at 1212.511 kb on - strand, within SMa2145at 1212.513 kb on - strand, within SMa2145at 1212.513 kb on - strand, within SMa2145at 1212.544 kb on + strand, within SMa2145at 1212.545 kb on - strand, within SMa2145at 1212.589 kb on - strand, within SMa2145at 1212.803 kb on - strand, within SMa2145at 1212.818 kb on + strand, within SMa2145at 1212.819 kb on - strand, within SMa2145at 1212.909 kb on + strand, within SMa2145at 1212.910 kb on - strand, within SMa2145at 1212.910 kb on - strand, within SMa2145at 1212.951 kb on - strand, within SMa2145at 1212.977 kb on + strand, within SMa2145at 1212.981 kb on - strand, within SMa2145at 1213.064 kb on + strand, within SMa2145at 1213.064 kb on + strand, within SMa2145at 1213.291 kb on + strandat 1213.292 kb on - strandat 1213.292 kb on - strandat 1213.292 kb on - strandat 1213.479 kb on - strandat 1213.479 kb on - strandat 1213.509 kb on + strandat 1213.509 kb on + strandat 1213.561 kb on - strandat 1213.585 kb on + strandat 1213.586 kb on - strandat 1213.591 kb on - strandat 1213.665 kb on + strandat 1214.184 kb on - strand, within SMa2147at 1214.184 kb on - strand, within SMa2147at 1214.267 kb on + strand, within SMa2147at 1214.268 kb on - strand, within SMa2147at 1214.268 kb on - strand, within SMa2147at 1214.268 kb on - strand, within SMa2147at 1214.268 kb on - strand, within SMa2147at 1214.272 kb on + strand, within SMa2147at 1214.273 kb on - strand, within SMa2147at 1214.273 kb on - strand, within SMa2147at 1214.273 kb on - strand, within SMa2147at 1214.273 kb on - strand, within SMa2147at 1214.273 kb on - strand, within SMa2147

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM
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1,211,132 + SMa2143 0.12 -1.5
1,211,133 - SMa2143 0.12 -0.9
1,211,221 - SMa2143 0.21 -0.7
1,211,221 - SMa2143 0.21 -0.3
1,211,278 - SMa2143 0.27 +1.3
1,211,435 + SMa2143 0.43 -0.3
1,211,517 - SMa2143 0.52 +0.8
1,211,647 + SMa2143 0.66 -0.5
1,211,647 + SMa2143 0.66 -1.2
1,211,648 - SMa2143 0.66 -0.7
1,211,712 - SMa2143 0.72 +1.8
1,211,848 - SMa2143 0.87 +0.8
1,211,886 - +0.2
1,212,029 - +0.0
1,212,250 + SMa2145 0.17 -0.1
1,212,258 - SMa2145 0.18 -0.2
1,212,362 + SMa2145 0.26 +0.9
1,212,511 - SMa2145 0.38 -0.3
1,212,511 - SMa2145 0.38 +0.3
1,212,511 - SMa2145 0.38 -0.5
1,212,513 - SMa2145 0.38 +0.6
1,212,513 - SMa2145 0.38 -0.2
1,212,544 + SMa2145 0.41 -0.4
1,212,545 - SMa2145 0.41 -0.5
1,212,589 - SMa2145 0.44 -0.1
1,212,803 - SMa2145 0.61 +0.2
1,212,818 + SMa2145 0.63 -0.1
1,212,819 - SMa2145 0.63 +0.7
1,212,909 + SMa2145 0.70 +1.1
1,212,910 - SMa2145 0.70 +0.2
1,212,910 - SMa2145 0.70 +1.5
1,212,951 - SMa2145 0.73 +1.3
1,212,977 + SMa2145 0.75 +0.7
1,212,981 - SMa2145 0.76 +0.5
1,213,064 + SMa2145 0.82 +0.9
1,213,064 + SMa2145 0.82 -0.3
1,213,291 + +0.0
1,213,292 - -0.2
1,213,292 - -0.3
1,213,292 - -0.8
1,213,479 - -0.2
1,213,479 - +1.8
1,213,509 + -1.2
1,213,509 + +0.3
1,213,561 - -0.4
1,213,585 + -1.7
1,213,586 - +0.5
1,213,591 - +0.5
1,213,665 + -0.8
1,214,184 - SMa2147 0.55 +0.3
1,214,184 - SMa2147 0.55 -0.6
1,214,267 + SMa2147 0.64 +1.7
1,214,268 - SMa2147 0.64 +1.4
1,214,268 - SMa2147 0.64 -0.9
1,214,268 - SMa2147 0.64 -0.5
1,214,268 - SMa2147 0.64 -0.1
1,214,272 + SMa2147 0.64 -0.7
1,214,273 - SMa2147 0.65 +0.1
1,214,273 - SMa2147 0.65 -0.7
1,214,273 - SMa2147 0.65 +0.4
1,214,273 - SMa2147 0.65 +1.4
1,214,273 - SMa2147 0.65 +0.1

Or see this region's nucleotide sequence