Strain Fitness in Sinorhizobium meliloti 1021 around SMa1874

Experiment: 3-octanone 2.655166667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa1872 and SMa1874 are separated by 289 nucleotidesSMa1874 and SMa1875 are separated by 610 nucleotides SMa1872: SMa1872 - threonine dehydratase, at 1,063,481 to 1,064,452 SMa1872 SMa1874: SMa1874 - hypothetical protein, at 1,064,742 to 1,065,083 SMa1874 SMa1875: SMa1875 - reverse transcriptase, at 1,065,694 to 1,067,211 SMa1875 Position (kb) 1064 1065 1066Strain fitness (log2 ratio) -1 0 1 2at 1063.765 kb on - strand, within SMa1872at 1063.867 kb on + strand, within SMa1872at 1063.867 kb on + strand, within SMa1872at 1063.908 kb on - strand, within SMa1872at 1063.975 kb on - strand, within SMa1872at 1064.000 kb on - strand, within SMa1872at 1064.114 kb on + strand, within SMa1872at 1064.115 kb on - strand, within SMa1872at 1064.358 kb on + strandat 1064.358 kb on + strandat 1064.358 kb on + strandat 1064.359 kb on - strandat 1064.359 kb on - strandat 1064.435 kb on + strandat 1064.435 kb on + strandat 1064.436 kb on - strandat 1064.436 kb on - strandat 1064.436 kb on - strandat 1064.443 kb on - strandat 1064.450 kb on + strandat 1064.808 kb on + strand, within SMa1874at 1064.809 kb on - strand, within SMa1874at 1064.860 kb on - strand, within SMa1874at 1064.861 kb on + strand, within SMa1874at 1064.861 kb on + strand, within SMa1874at 1064.861 kb on + strand, within SMa1874at 1064.861 kb on + strand, within SMa1874at 1064.862 kb on - strand, within SMa1874at 1064.956 kb on - strand, within SMa1874at 1065.022 kb on + strand, within SMa1874at 1065.022 kb on + strand, within SMa1874at 1065.023 kb on - strand, within SMa1874at 1065.023 kb on - strand, within SMa1874at 1065.023 kb on - strand, within SMa1874at 1065.027 kb on + strand, within SMa1874at 1065.027 kb on + strand, within SMa1874at 1065.028 kb on - strand, within SMa1874at 1065.084 kb on + strandat 1065.085 kb on - strandat 1065.308 kb on + strandat 1065.309 kb on - strandat 1065.336 kb on - strandat 1065.353 kb on - strandat 1065.398 kb on + strandat 1065.462 kb on - strandat 1065.479 kb on + strandat 1065.509 kb on + strandat 1065.510 kb on - strandat 1065.510 kb on - strandat 1065.571 kb on - strandat 1065.606 kb on - strandat 1065.606 kb on - strandat 1065.606 kb on - strandat 1065.606 kb on - strandat 1065.619 kb on - strandat 1065.888 kb on + strand, within SMa1875at 1065.892 kb on + strand, within SMa1875at 1065.920 kb on + strand, within SMa1875at 1065.921 kb on - strand, within SMa1875

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM
remove
1,063,765 - SMa1872 0.29 +0.0
1,063,867 + SMa1872 0.40 -0.2
1,063,867 + SMa1872 0.40 +0.1
1,063,908 - SMa1872 0.44 +0.3
1,063,975 - SMa1872 0.51 -0.2
1,064,000 - SMa1872 0.53 +0.3
1,064,114 + SMa1872 0.65 +0.5
1,064,115 - SMa1872 0.65 -0.1
1,064,358 + +0.2
1,064,358 + -0.6
1,064,358 + +0.3
1,064,359 - +1.1
1,064,359 - +0.2
1,064,435 + +0.0
1,064,435 + -0.9
1,064,436 - +0.1
1,064,436 - +0.9
1,064,436 - +1.5
1,064,443 - -1.3
1,064,450 + +0.2
1,064,808 + SMa1874 0.19 -0.7
1,064,809 - SMa1874 0.20 +0.3
1,064,860 - SMa1874 0.35 +0.6
1,064,861 + SMa1874 0.35 +0.3
1,064,861 + SMa1874 0.35 +0.2
1,064,861 + SMa1874 0.35 +0.6
1,064,861 + SMa1874 0.35 +0.1
1,064,862 - SMa1874 0.35 +0.5
1,064,956 - SMa1874 0.63 +0.2
1,065,022 + SMa1874 0.82 -0.6
1,065,022 + SMa1874 0.82 +0.3
1,065,023 - SMa1874 0.82 +1.2
1,065,023 - SMa1874 0.82 -1.4
1,065,023 - SMa1874 0.82 +2.0
1,065,027 + SMa1874 0.83 -0.2
1,065,027 + SMa1874 0.83 +0.6
1,065,028 - SMa1874 0.84 -0.2
1,065,084 + -0.6
1,065,085 - -1.2
1,065,308 + +0.3
1,065,309 - -0.0
1,065,336 - +0.9
1,065,353 - +0.2
1,065,398 + -0.1
1,065,462 - +0.1
1,065,479 + +0.1
1,065,509 + +1.3
1,065,510 - -0.2
1,065,510 - -0.4
1,065,571 - -0.1
1,065,606 - +0.1
1,065,606 - -0.6
1,065,606 - -0.2
1,065,606 - +0.5
1,065,619 - -1.1
1,065,888 + SMa1875 0.13 -0.5
1,065,892 + SMa1875 0.13 -0.5
1,065,920 + SMa1875 0.15 +0.9
1,065,921 - SMa1875 0.15 +0.2

Or see this region's nucleotide sequence