Strain Fitness in Sinorhizobium meliloti 1021 around SMa1823

Experiment: 3-octanone 2.655166667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1822 and SMa1823 are separated by 215 nucleotidesSMa1823 and SMa1825 are separated by 144 nucleotides SMa1822: SMa1822 - hypothetical protein, at 1,033,278 to 1,034,189 SMa1822 SMa1823: SMa1823 - Transcriptional regulator, at 1,034,405 to 1,035,313 SMa1823 SMa1825: SMa1825 - Transcriptional regulator, at 1,035,458 to 1,036,366 SMa1825 Position (kb) 1034 1035 1036Strain fitness (log2 ratio) -1 0 1 2at 1033.652 kb on - strand, within SMa1822at 1033.900 kb on + strand, within SMa1822at 1033.901 kb on - strand, within SMa1822at 1033.901 kb on - strand, within SMa1822at 1034.204 kb on - strandat 1034.215 kb on - strandat 1034.252 kb on + strandat 1034.362 kb on - strandat 1034.653 kb on - strand, within SMa1823at 1034.918 kb on + strand, within SMa1823at 1034.918 kb on + strand, within SMa1823at 1034.947 kb on + strand, within SMa1823at 1034.947 kb on + strand, within SMa1823at 1034.947 kb on + strand, within SMa1823at 1034.949 kb on + strand, within SMa1823at 1034.950 kb on - strand, within SMa1823at 1034.950 kb on - strand, within SMa1823at 1034.950 kb on - strand, within SMa1823at 1034.950 kb on - strand, within SMa1823at 1035.013 kb on + strand, within SMa1823at 1035.057 kb on - strand, within SMa1823at 1035.099 kb on + strand, within SMa1823at 1035.100 kb on - strand, within SMa1823at 1035.133 kb on + strand, within SMa1823at 1035.219 kb on + strand, within SMa1823at 1035.219 kb on + strand, within SMa1823at 1035.219 kb on + strand, within SMa1823at 1035.220 kb on - strand, within SMa1823at 1035.238 kb on + strandat 1035.367 kb on + strandat 1035.367 kb on + strandat 1035.368 kb on - strandat 1035.368 kb on - strandat 1035.368 kb on - strandat 1035.372 kb on + strandat 1035.372 kb on + strandat 1035.402 kb on - strandat 1035.412 kb on + strandat 1035.626 kb on + strand, within SMa1825at 1035.781 kb on + strand, within SMa1825at 1035.781 kb on + strand, within SMa1825at 1035.782 kb on - strand, within SMa1825at 1035.869 kb on + strand, within SMa1825at 1035.869 kb on + strand, within SMa1825at 1035.870 kb on - strand, within SMa1825at 1035.870 kb on - strand, within SMa1825at 1035.870 kb on - strand, within SMa1825at 1035.885 kb on - strand, within SMa1825at 1035.967 kb on + strand, within SMa1825at 1035.967 kb on + strand, within SMa1825at 1035.967 kb on + strand, within SMa1825at 1035.968 kb on - strand, within SMa1825at 1035.968 kb on - strand, within SMa1825at 1035.968 kb on - strand, within SMa1825at 1035.968 kb on - strand, within SMa1825at 1035.968 kb on - strand, within SMa1825at 1036.165 kb on - strand, within SMa1825at 1036.179 kb on + strand, within SMa1825at 1036.179 kb on + strand, within SMa1825at 1036.180 kb on - strand, within SMa1825at 1036.194 kb on + strand, within SMa1825at 1036.194 kb on + strand, within SMa1825at 1036.194 kb on + strand, within SMa1825at 1036.218 kb on - strand, within SMa1825

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM
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1,033,652 - SMa1822 0.41 +1.9
1,033,900 + SMa1822 0.68 -0.2
1,033,901 - SMa1822 0.68 +0.2
1,033,901 - SMa1822 0.68 +1.7
1,034,204 - -0.2
1,034,215 - -0.2
1,034,252 + +0.1
1,034,362 - +0.4
1,034,653 - SMa1823 0.27 +0.1
1,034,918 + SMa1823 0.56 +0.3
1,034,918 + SMa1823 0.56 -0.1
1,034,947 + SMa1823 0.60 -0.1
1,034,947 + SMa1823 0.60 +0.4
1,034,947 + SMa1823 0.60 -1.6
1,034,949 + SMa1823 0.60 -0.9
1,034,950 - SMa1823 0.60 -0.1
1,034,950 - SMa1823 0.60 -0.6
1,034,950 - SMa1823 0.60 -0.9
1,034,950 - SMa1823 0.60 +0.6
1,035,013 + SMa1823 0.67 -0.5
1,035,057 - SMa1823 0.72 -0.6
1,035,099 + SMa1823 0.76 -1.3
1,035,100 - SMa1823 0.76 +0.1
1,035,133 + SMa1823 0.80 +0.0
1,035,219 + SMa1823 0.90 -0.3
1,035,219 + SMa1823 0.90 +1.0
1,035,219 + SMa1823 0.90 -0.2
1,035,220 - SMa1823 0.90 +0.6
1,035,238 + +0.3
1,035,367 + -0.3
1,035,367 + -0.8
1,035,368 - +0.5
1,035,368 - +1.9
1,035,368 - -0.5
1,035,372 + +0.9
1,035,372 + -0.7
1,035,402 - -0.1
1,035,412 + +0.9
1,035,626 + SMa1825 0.18 -0.0
1,035,781 + SMa1825 0.36 +0.3
1,035,781 + SMa1825 0.36 +0.7
1,035,782 - SMa1825 0.36 -0.4
1,035,869 + SMa1825 0.45 +0.1
1,035,869 + SMa1825 0.45 +1.9
1,035,870 - SMa1825 0.45 +0.3
1,035,870 - SMa1825 0.45 -1.3
1,035,870 - SMa1825 0.45 +1.0
1,035,885 - SMa1825 0.47 -0.1
1,035,967 + SMa1825 0.56 +1.2
1,035,967 + SMa1825 0.56 -0.9
1,035,967 + SMa1825 0.56 -0.6
1,035,968 - SMa1825 0.56 +0.6
1,035,968 - SMa1825 0.56 -0.2
1,035,968 - SMa1825 0.56 -0.1
1,035,968 - SMa1825 0.56 -0.1
1,035,968 - SMa1825 0.56 +0.6
1,036,165 - SMa1825 0.78 +0.3
1,036,179 + SMa1825 0.79 -0.2
1,036,179 + SMa1825 0.79 -0.3
1,036,180 - SMa1825 0.79 -0.6
1,036,194 + SMa1825 0.81 -0.3
1,036,194 + SMa1825 0.81 +0.6
1,036,194 + SMa1825 0.81 +1.9
1,036,218 - SMa1825 0.84 +0.5

Or see this region's nucleotide sequence