Strain Fitness in Sinorhizobium meliloti 1021 around SMa1821

Experiment: 3-octanone 2.655166667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1819 and SMa1820 overlap by 1 nucleotidesSMa1820 and SMa1821 are separated by 67 nucleotidesSMa1821 and SMa1822 are separated by 225 nucleotides SMa1819: SMa1819 - hypothetical protein, at 1,030,041 to 1,032,026 SMa1819 SMa1820: SMa1820 - hypothetical protein, at 1,032,026 to 1,032,334 SMa1820 SMa1821: SMa1821 - hydrolase, at 1,032,402 to 1,033,052 SMa1821 SMa1822: SMa1822 - hypothetical protein, at 1,033,278 to 1,034,189 SMa1822 Position (kb) 1032 1033 1034Strain fitness (log2 ratio) -1 0 1 2at 1031.435 kb on + strand, within SMa1819at 1031.437 kb on + strandat 1031.685 kb on - strand, within SMa1819at 1031.689 kb on + strand, within SMa1819at 1031.689 kb on + strand, within SMa1819at 1031.690 kb on - strand, within SMa1819at 1032.073 kb on + strand, within SMa1820at 1032.074 kb on - strand, within SMa1820at 1032.074 kb on - strand, within SMa1820at 1032.074 kb on - strand, within SMa1820at 1032.125 kb on - strand, within SMa1820at 1032.207 kb on - strand, within SMa1820at 1032.264 kb on + strand, within SMa1820at 1032.264 kb on + strand, within SMa1820at 1032.265 kb on - strand, within SMa1820at 1032.306 kb on + strandat 1032.306 kb on + strandat 1032.307 kb on - strandat 1032.307 kb on - strandat 1032.307 kb on - strandat 1032.457 kb on + strandat 1032.499 kb on + strand, within SMa1821at 1032.500 kb on - strand, within SMa1821at 1032.500 kb on - strand, within SMa1821at 1032.542 kb on - strand, within SMa1821at 1032.542 kb on - strand, within SMa1821at 1032.542 kb on - strand, within SMa1821at 1033.208 kb on + strandat 1033.209 kb on - strandat 1033.209 kb on - strandat 1033.237 kb on - strandat 1033.652 kb on - strand, within SMa1822at 1033.900 kb on + strand, within SMa1822at 1033.901 kb on - strand, within SMa1822at 1033.901 kb on - strand, within SMa1822

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM
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1,031,435 + SMa1819 0.70 -0.1
1,031,437 + -0.5
1,031,685 - SMa1819 0.83 -0.3
1,031,689 + SMa1819 0.83 -1.2
1,031,689 + SMa1819 0.83 -0.1
1,031,690 - SMa1819 0.83 -0.6
1,032,073 + SMa1820 0.15 -0.6
1,032,074 - SMa1820 0.16 -0.0
1,032,074 - SMa1820 0.16 +0.3
1,032,074 - SMa1820 0.16 +0.7
1,032,125 - SMa1820 0.32 -1.5
1,032,207 - SMa1820 0.59 -0.2
1,032,264 + SMa1820 0.77 -0.0
1,032,264 + SMa1820 0.77 +0.3
1,032,265 - SMa1820 0.77 +1.1
1,032,306 + -0.1
1,032,306 + -1.0
1,032,307 - -0.7
1,032,307 - -0.5
1,032,307 - +0.5
1,032,457 + +0.1
1,032,499 + SMa1821 0.15 -0.3
1,032,500 - SMa1821 0.15 +0.0
1,032,500 - SMa1821 0.15 +0.3
1,032,542 - SMa1821 0.22 -0.0
1,032,542 - SMa1821 0.22 -0.1
1,032,542 - SMa1821 0.22 -0.0
1,033,208 + -0.1
1,033,209 - +0.1
1,033,209 - +1.0
1,033,237 - -1.2
1,033,652 - SMa1822 0.41 +1.9
1,033,900 + SMa1822 0.68 -0.2
1,033,901 - SMa1822 0.68 +0.2
1,033,901 - SMa1822 0.68 +1.7

Or see this region's nucleotide sequence