Strain Fitness in Sinorhizobium meliloti 1021 around SMa1711

Experiment: 3-octanone 2.655166667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1706 and SMa1711 are separated by 412 nucleotidesSMa1711 and SMa1715 are separated by 864 nucleotides SMa1706: SMa1706 - hypothetical protein, at 962,812 to 963,234 SMa1706 SMa1711: SMa1711 - arginase, at 963,647 to 964,540 SMa1711 SMa1715: SMa1715 - AdeC3 adenine deaminase, at 965,405 to 967,192 SMa1715 Position (kb) 963 964 965Strain fitness (log2 ratio) -2 -1 0 1 2at 962.678 kb on + strandat 962.727 kb on + strandat 963.111 kb on + strand, within SMa1706at 963.137 kb on - strand, within SMa1706at 963.249 kb on + strandat 963.250 kb on - strandat 963.366 kb on + strandat 963.366 kb on + strandat 963.503 kb on + strandat 963.504 kb on - strandat 963.504 kb on - strandat 963.504 kb on - strandat 963.508 kb on + strandat 963.508 kb on + strandat 963.509 kb on - strandat 963.549 kb on - strandat 963.564 kb on - strandat 963.590 kb on - strandat 963.590 kb on - strandat 963.627 kb on - strandat 963.662 kb on + strandat 963.805 kb on + strand, within SMa1711at 964.033 kb on + strand, within SMa1711at 964.076 kb on + strand, within SMa1711at 964.162 kb on + strand, within SMa1711at 964.163 kb on - strand, within SMa1711at 964.163 kb on - strand, within SMa1711at 964.393 kb on - strand, within SMa1711at 964.455 kb on - strandat 964.506 kb on + strandat 964.806 kb on + strandat 964.806 kb on + strandat 965.137 kb on + strandat 965.137 kb on + strandat 965.138 kb on - strandat 965.214 kb on + strandat 965.292 kb on + strandat 965.331 kb on - strandat 965.336 kb on + strandat 965.336 kb on + strandat 965.336 kb on + strandat 965.336 kb on + strandat 965.336 kb on + strandat 965.336 kb on + strandat 965.337 kb on - strandat 965.337 kb on - strandat 965.337 kb on - strandat 965.337 kb on - strandat 965.337 kb on - strandat 965.382 kb on + strandat 965.471 kb on + strandat 965.471 kb on + strandat 965.472 kb on - strandat 965.472 kb on - strandat 965.521 kb on + strandat 965.522 kb on - strandat 965.522 kb on - strandat 965.524 kb on + strandat 965.524 kb on + strandat 965.524 kb on + strandat 965.525 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM
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962,678 + -0.4
962,727 + +0.9
963,111 + SMa1706 0.71 +0.3
963,137 - SMa1706 0.77 -1.3
963,249 + +0.3
963,250 - -0.1
963,366 + -0.3
963,366 + +0.4
963,503 + -0.0
963,504 - +0.1
963,504 - +0.6
963,504 - +0.8
963,508 + +0.8
963,508 + +0.6
963,509 - -0.9
963,549 - -0.3
963,564 - -1.2
963,590 - -1.3
963,590 - +1.9
963,627 - +0.2
963,662 + +0.3
963,805 + SMa1711 0.18 -1.8
964,033 + SMa1711 0.43 -0.3
964,076 + SMa1711 0.48 -0.6
964,162 + SMa1711 0.58 +0.0
964,163 - SMa1711 0.58 -2.0
964,163 - SMa1711 0.58 -0.9
964,393 - SMa1711 0.83 -0.7
964,455 - +0.9
964,506 + -0.9
964,806 + -0.4
964,806 + +0.6
965,137 + -0.1
965,137 + +0.9
965,138 - -0.2
965,214 + -0.1
965,292 + +0.2
965,331 - +0.3
965,336 + -0.5
965,336 + -0.6
965,336 + +0.5
965,336 + -0.1
965,336 + +0.2
965,336 + +0.6
965,337 - +0.1
965,337 - -0.7
965,337 - +0.5
965,337 - +0.1
965,337 - -0.1
965,382 + -0.3
965,471 + -0.4
965,471 + +0.2
965,472 - +1.3
965,472 - +0.1
965,521 + +0.1
965,522 - -0.1
965,522 - -0.3
965,524 + +0.4
965,524 + +1.0
965,524 + +1.9
965,525 - -0.4

Or see this region's nucleotide sequence