Strain Fitness in Sinorhizobium meliloti 1021 around SMa0257

Experiment: 3-octanone 2.655166667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0255 and SMa0257 are separated by 168 nucleotidesSMa0257 and SMa0259 are separated by 255 nucleotides SMa0255: SMa0255 - DNA polymerase III subunit epsilon, at 142,327 to 143,304 SMa0255 SMa0257: SMa0257 - methylamine, at 143,473 to 145,566 SMa0257 SMa0259: SMa0259 - hypothetical protein, at 145,822 to 146,667 SMa0259 Position (kb) 143 144 145 146Strain fitness (log2 ratio) -2 -1 0 1 2 3at 142.576 kb on - strand, within SMa0255at 142.646 kb on + strand, within SMa0255at 142.655 kb on - strand, within SMa0255at 142.655 kb on - strand, within SMa0255at 142.749 kb on + strand, within SMa0255at 142.750 kb on - strand, within SMa0255at 142.924 kb on + strand, within SMa0255at 142.925 kb on - strand, within SMa0255at 142.946 kb on - strand, within SMa0255at 142.970 kb on + strand, within SMa0255at 142.970 kb on + strand, within SMa0255at 142.971 kb on - strand, within SMa0255at 143.048 kb on - strand, within SMa0255at 143.178 kb on - strand, within SMa0255at 143.178 kb on - strand, within SMa0255at 143.233 kb on + strandat 143.233 kb on + strandat 143.302 kb on + strandat 143.303 kb on - strandat 143.303 kb on - strandat 143.307 kb on + strandat 143.308 kb on - strandat 143.493 kb on - strandat 143.506 kb on - strandat 143.553 kb on - strandat 143.564 kb on + strandat 143.580 kb on - strandat 143.770 kb on + strand, within SMa0257at 143.771 kb on - strand, within SMa0257at 143.853 kb on + strand, within SMa0257at 143.854 kb on - strand, within SMa0257at 143.966 kb on + strand, within SMa0257at 143.966 kb on + strand, within SMa0257at 143.967 kb on - strand, within SMa0257at 143.967 kb on - strand, within SMa0257at 144.163 kb on + strand, within SMa0257at 144.164 kb on - strand, within SMa0257at 144.195 kb on - strand, within SMa0257at 144.195 kb on - strand, within SMa0257at 144.195 kb on - strand, within SMa0257at 144.493 kb on + strand, within SMa0257at 144.501 kb on + strand, within SMa0257at 144.501 kb on + strand, within SMa0257at 144.502 kb on - strand, within SMa0257at 144.502 kb on - strand, within SMa0257at 144.640 kb on + strand, within SMa0257at 144.640 kb on + strand, within SMa0257at 144.641 kb on - strand, within SMa0257at 144.641 kb on - strand, within SMa0257at 144.650 kb on - strand, within SMa0257at 144.650 kb on - strand, within SMa0257at 144.669 kb on + strand, within SMa0257at 144.669 kb on + strand, within SMa0257at 144.672 kb on - strand, within SMa0257at 144.726 kb on - strand, within SMa0257at 144.990 kb on - strand, within SMa0257at 145.058 kb on + strand, within SMa0257at 145.058 kb on + strand, within SMa0257at 145.059 kb on - strand, within SMa0257at 145.064 kb on + strand, within SMa0257at 145.064 kb on + strand, within SMa0257at 145.065 kb on - strand, within SMa0257at 145.065 kb on - strand, within SMa0257at 145.490 kb on + strandat 145.490 kb on + strandat 145.538 kb on - strandat 145.538 kb on - strandat 145.543 kb on - strandat 145.669 kb on - strandat 145.686 kb on + strandat 145.867 kb on + strandat 145.970 kb on - strand, within SMa0259at 145.971 kb on - strand, within SMa0259at 146.015 kb on + strand, within SMa0259at 146.015 kb on + strand, within SMa0259at 146.016 kb on - strand, within SMa0259at 146.055 kb on + strand, within SMa0259at 146.426 kb on + strand, within SMa0259at 146.427 kb on - strand, within SMa0259at 146.427 kb on - strand, within SMa0259at 146.453 kb on + strand, within SMa0259at 146.548 kb on + strand, within SMa0259at 146.548 kb on + strand, within SMa0259at 146.549 kb on - strand, within SMa0259

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM
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142,576 - SMa0255 0.25 +0.0
142,646 + SMa0255 0.33 +0.1
142,655 - SMa0255 0.34 -1.6
142,655 - SMa0255 0.34 -0.5
142,749 + SMa0255 0.43 +0.8
142,750 - SMa0255 0.43 -0.5
142,924 + SMa0255 0.61 +0.4
142,925 - SMa0255 0.61 +0.2
142,946 - SMa0255 0.63 +0.8
142,970 + SMa0255 0.66 +0.1
142,970 + SMa0255 0.66 -0.2
142,971 - SMa0255 0.66 +0.7
143,048 - SMa0255 0.74 +0.3
143,178 - SMa0255 0.87 -0.7
143,178 - SMa0255 0.87 -1.4
143,233 + -0.1
143,233 + +1.1
143,302 + -0.1
143,303 - -0.3
143,303 - -0.7
143,307 + -0.2
143,308 - +0.2
143,493 - +2.8
143,506 - +0.0
143,553 - +0.5
143,564 + -0.4
143,580 - -0.2
143,770 + SMa0257 0.14 -0.6
143,771 - SMa0257 0.14 -0.5
143,853 + SMa0257 0.18 +0.0
143,854 - SMa0257 0.18 +0.1
143,966 + SMa0257 0.24 +0.1
143,966 + SMa0257 0.24 -0.8
143,967 - SMa0257 0.24 -0.2
143,967 - SMa0257 0.24 +1.3
144,163 + SMa0257 0.33 +0.1
144,164 - SMa0257 0.33 -0.9
144,195 - SMa0257 0.34 -0.5
144,195 - SMa0257 0.34 -0.3
144,195 - SMa0257 0.34 -0.0
144,493 + SMa0257 0.49 -0.6
144,501 + SMa0257 0.49 -0.6
144,501 + SMa0257 0.49 -0.2
144,502 - SMa0257 0.49 -0.2
144,502 - SMa0257 0.49 -0.7
144,640 + SMa0257 0.56 -0.8
144,640 + SMa0257 0.56 -0.6
144,641 - SMa0257 0.56 +0.0
144,641 - SMa0257 0.56 -1.1
144,650 - SMa0257 0.56 +0.7
144,650 - SMa0257 0.56 -0.3
144,669 + SMa0257 0.57 +1.8
144,669 + SMa0257 0.57 +1.2
144,672 - SMa0257 0.57 -0.7
144,726 - SMa0257 0.60 +1.2
144,990 - SMa0257 0.72 -0.2
145,058 + SMa0257 0.76 -0.2
145,058 + SMa0257 0.76 +0.1
145,059 - SMa0257 0.76 -0.1
145,064 + SMa0257 0.76 -1.0
145,064 + SMa0257 0.76 +1.3
145,065 - SMa0257 0.76 -0.3
145,065 - SMa0257 0.76 -0.3
145,490 + +0.5
145,490 + -0.3
145,538 - +0.0
145,538 - +0.3
145,543 - +0.3
145,669 - +0.8
145,686 + +0.2
145,867 + +0.5
145,970 - SMa0259 0.17 +0.0
145,971 - SMa0259 0.18 -1.9
146,015 + SMa0259 0.23 -0.5
146,015 + SMa0259 0.23 -0.0
146,016 - SMa0259 0.23 +0.0
146,055 + SMa0259 0.28 -2.2
146,426 + SMa0259 0.71 -1.2
146,427 - SMa0259 0.72 -1.0
146,427 - SMa0259 0.72 +0.1
146,453 + SMa0259 0.75 +0.0
146,548 + SMa0259 0.86 -0.2
146,548 + SMa0259 0.86 -0.5
146,549 - SMa0259 0.86 -0.3

Or see this region's nucleotide sequence