Experiment: 3-octanone 2.655166667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21233 and SM_b21234 overlap by 4 nucleotides SM_b21234 and SM_b21235 are separated by 480 nucleotides SM_b21235 and SM_b21236 are separated by 444 nucleotides
SM_b21233: SM_b21233 - transposase of insertion sequence ISRm1 orfB protein, at 799,170 to 800,000
_b21233
SM_b21234: SM_b21234 - transposase of insertion sequence ISRm1 orfA protein, at 799,997 to 800,389
_b21234
SM_b21235: SM_b21235 - formyltransferase, methionyl-tRNA(fMet) N-formyltransferase, at 800,870 to 801,808
_b21235
SM_b21236: SM_b21236 - ATPGTP-binding protein, at 802,253 to 803,104
_b21236
Position (kb) 800
801
802 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 800.415 kb on + strand at 800.415 kb on + strand at 800.415 kb on + strand at 800.419 kb on + strand at 800.419 kb on + strand at 800.551 kb on + strand at 800.576 kb on + strand at 800.603 kb on + strand at 800.616 kb on + strand at 800.658 kb on + strand at 800.659 kb on - strand at 800.719 kb on - strand at 801.014 kb on - strand, within SM_b21235 at 801.014 kb on - strand, within SM_b21235 at 801.043 kb on + strand, within SM_b21235 at 801.043 kb on + strand, within SM_b21235 at 801.045 kb on + strand, within SM_b21235 at 801.045 kb on + strand, within SM_b21235 at 801.045 kb on + strand, within SM_b21235 at 801.045 kb on + strand, within SM_b21235 at 801.045 kb on + strand, within SM_b21235 at 801.045 kb on + strand, within SM_b21235 at 801.046 kb on - strand, within SM_b21235 at 801.046 kb on - strand, within SM_b21235 at 801.087 kb on - strand, within SM_b21235 at 801.101 kb on + strand, within SM_b21235 at 801.102 kb on + strand, within SM_b21235 at 801.102 kb on + strand, within SM_b21235 at 801.102 kb on + strand, within SM_b21235 at 801.109 kb on + strand, within SM_b21235 at 801.216 kb on + strand, within SM_b21235 at 801.288 kb on - strand, within SM_b21235 at 801.288 kb on - strand, within SM_b21235 at 801.319 kb on + strand, within SM_b21235 at 801.322 kb on - strand, within SM_b21235 at 801.368 kb on + strand, within SM_b21235 at 801.369 kb on - strand, within SM_b21235 at 801.446 kb on - strand, within SM_b21235 at 801.560 kb on + strand, within SM_b21235 at 801.561 kb on - strand, within SM_b21235 at 801.561 kb on - strand, within SM_b21235 at 801.620 kb on + strand, within SM_b21235 at 801.720 kb on - strand at 801.722 kb on + strand at 801.723 kb on - strand at 801.723 kb on - strand at 801.798 kb on - strand at 801.819 kb on + strand at 801.864 kb on - strand at 801.865 kb on + strand at 801.865 kb on + strand at 801.865 kb on + strand at 801.866 kb on - strand at 801.866 kb on - strand at 801.866 kb on - strand at 801.866 kb on - strand at 801.866 kb on - strand at 801.866 kb on - strand at 801.871 kb on + strand at 801.901 kb on + strand at 801.901 kb on + strand at 801.901 kb on + strand at 801.902 kb on - strand at 801.902 kb on - strand at 801.902 kb on - strand at 801.902 kb on - strand at 801.902 kb on - strand at 801.902 kb on - strand at 801.977 kb on + strand at 801.977 kb on + strand at 801.978 kb on - strand at 801.978 kb on - strand at 801.978 kb on - strand at 801.978 kb on - strand at 801.978 kb on - strand at 802.008 kb on + strand at 802.008 kb on + strand at 802.066 kb on - strand at 802.070 kb on + strand at 802.070 kb on + strand at 802.071 kb on - strand at 802.138 kb on + strand at 802.139 kb on - strand at 802.139 kb on - strand at 802.139 kb on - strand at 802.201 kb on + strand at 802.201 kb on + strand at 802.202 kb on - strand at 802.202 kb on - strand at 802.202 kb on - strand at 802.260 kb on + strand at 802.261 kb on - strand at 802.277 kb on + strand at 802.525 kb on + strand, within SM_b21236 at 802.525 kb on + strand, within SM_b21236 at 802.525 kb on + strand, within SM_b21236 at 802.526 kb on - strand, within SM_b21236 at 802.545 kb on + strand, within SM_b21236 at 802.545 kb on + strand, within SM_b21236 at 802.545 kb on + strand, within SM_b21236 at 802.545 kb on + strand, within SM_b21236 at 802.545 kb on + strand, within SM_b21236 at 802.546 kb on - strand, within SM_b21236 at 802.546 kb on - strand, within SM_b21236 at 802.546 kb on - strand, within SM_b21236 at 802.611 kb on + strand, within SM_b21236 at 802.616 kb on + strand, within SM_b21236 at 802.616 kb on + strand, within SM_b21236 at 802.617 kb on - strand, within SM_b21236 at 802.664 kb on + strand, within SM_b21236
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM remove 800,415 + +0.2 800,415 + +0.9 800,415 + +0.0 800,419 + +0.3 800,419 + +1.5 800,551 + -0.9 800,576 + -1.7 800,603 + -0.2 800,616 + -0.6 800,658 + +0.3 800,659 - -1.0 800,719 - +0.7 801,014 - SM_b21235 0.15 -0.0 801,014 - SM_b21235 0.15 -0.1 801,043 + SM_b21235 0.18 +0.8 801,043 + SM_b21235 0.18 +0.5 801,045 + SM_b21235 0.19 +1.9 801,045 + SM_b21235 0.19 +0.1 801,045 + SM_b21235 0.19 -0.5 801,045 + SM_b21235 0.19 -0.5 801,045 + SM_b21235 0.19 -0.2 801,045 + SM_b21235 0.19 +0.6 801,046 - SM_b21235 0.19 -2.7 801,046 - SM_b21235 0.19 +0.5 801,087 - SM_b21235 0.23 +0.9 801,101 + SM_b21235 0.25 +0.8 801,102 + SM_b21235 0.25 +0.1 801,102 + SM_b21235 0.25 +0.0 801,102 + SM_b21235 0.25 +0.4 801,109 + SM_b21235 0.25 +0.3 801,216 + SM_b21235 0.37 +0.1 801,288 - SM_b21235 0.45 +0.6 801,288 - SM_b21235 0.45 -0.4 801,319 + SM_b21235 0.48 +1.1 801,322 - SM_b21235 0.48 -0.7 801,368 + SM_b21235 0.53 +1.6 801,369 - SM_b21235 0.53 -0.1 801,446 - SM_b21235 0.61 +1.9 801,560 + SM_b21235 0.73 -0.2 801,561 - SM_b21235 0.74 -0.6 801,561 - SM_b21235 0.74 +1.1 801,620 + SM_b21235 0.80 +0.0 801,720 - -0.1 801,722 + -1.4 801,723 - +0.9 801,723 - -0.7 801,798 - +0.6 801,819 + -0.0 801,864 - -0.2 801,865 + -0.4 801,865 + -0.0 801,865 + +0.2 801,866 - -0.6 801,866 - -0.2 801,866 - -0.4 801,866 - +1.1 801,866 - -0.1 801,866 - -0.5 801,871 + +0.4 801,901 + +0.1 801,901 + +0.7 801,901 + +3.5 801,902 - +1.0 801,902 - +0.6 801,902 - +0.2 801,902 - -0.9 801,902 - +0.0 801,902 - +0.4 801,977 + -0.1 801,977 + +0.9 801,978 - +0.1 801,978 - +0.9 801,978 - -0.7 801,978 - -0.6 801,978 - -0.1 802,008 + +0.4 802,008 + +0.6 802,066 - +0.6 802,070 + +0.3 802,070 + -0.9 802,071 - -0.3 802,138 + +1.1 802,139 - +0.5 802,139 - +0.9 802,139 - +0.6 802,201 + -0.4 802,201 + -0.1 802,202 - -0.3 802,202 - -0.5 802,202 - -0.1 802,260 + +1.1 802,261 - +0.4 802,277 + -0.1 802,525 + SM_b21236 0.32 -0.6 802,525 + SM_b21236 0.32 -0.5 802,525 + SM_b21236 0.32 +0.1 802,526 - SM_b21236 0.32 +0.6 802,545 + SM_b21236 0.34 +1.6 802,545 + SM_b21236 0.34 +0.4 802,545 + SM_b21236 0.34 -0.2 802,545 + SM_b21236 0.34 +0.3 802,545 + SM_b21236 0.34 -0.7 802,546 - SM_b21236 0.34 +0.2 802,546 - SM_b21236 0.34 +0.1 802,546 - SM_b21236 0.34 +1.9 802,611 + SM_b21236 0.42 -0.3 802,616 + SM_b21236 0.43 -0.8 802,616 + SM_b21236 0.43 -0.1 802,617 - SM_b21236 0.43 -0.3 802,664 + SM_b21236 0.48 -0.4
Or see this region's nucleotide sequence