Experiment: 3-octanone 2.655166667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01184 and SMc01244 are separated by 181 nucleotides SMc01244 and SMc01183 are separated by 498 nucleotides
SMc01184: SMc01184 - hypothetical protein, at 1,747,158 to 1,748,696
SMc01184
SMc01244: SMc01244 - tRNA-Ala, at 1,748,878 to 1,748,953
SMc01244
SMc01183: SMc01183 - LexA repressor, at 1,749,452 to 1,750,168
SMc01183
Position (kb)
1748
1749 Strain fitness (log2 ratio)
-2
-1
0
1 at 1748.009 kb on + strand, within SMc01184 at 1748.010 kb on - strand, within SMc01184 at 1748.076 kb on + strand, within SMc01184 at 1748.076 kb on - strand, within SMc01184 at 1748.077 kb on - strand, within SMc01184 at 1748.234 kb on + strand, within SMc01184 at 1748.235 kb on - strand, within SMc01184 at 1748.235 kb on - strand, within SMc01184 at 1748.325 kb on + strand, within SMc01184 at 1748.326 kb on - strand, within SMc01184 at 1748.326 kb on - strand, within SMc01184 at 1748.380 kb on - strand, within SMc01184 at 1748.380 kb on - strand, within SMc01184 at 1748.442 kb on + strand, within SMc01184 at 1748.484 kb on + strand, within SMc01184 at 1748.512 kb on + strand, within SMc01184 at 1748.537 kb on + strand, within SMc01184 at 1748.538 kb on - strand, within SMc01184 at 1748.538 kb on - strand, within SMc01184 at 1748.620 kb on - strand at 1748.620 kb on - strand at 1748.694 kb on + strand at 1748.752 kb on - strand at 1748.805 kb on + strand at 1748.806 kb on - strand at 1748.861 kb on + strand at 1748.862 kb on - strand at 1748.862 kb on - strand at 1748.862 kb on - strand at 1748.862 kb on - strand at 1748.886 kb on - strand, within SMc01244 at 1748.886 kb on - strand, within SMc01244 at 1748.886 kb on - strand, within SMc01244 at 1749.015 kb on - strand at 1749.150 kb on + strand at 1749.150 kb on + strand at 1749.163 kb on - strand at 1749.197 kb on + strand at 1749.225 kb on + strand at 1749.225 kb on + strand at 1749.226 kb on - strand at 1749.235 kb on + strand at 1749.285 kb on - strand at 1749.668 kb on + strand, within SMc01183 at 1749.860 kb on - strand, within SMc01183
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM remove 1,748,009 + SMc01184 0.55 -0.3 1,748,010 - SMc01184 0.55 -0.7 1,748,076 + SMc01184 0.60 -1.2 1,748,076 - SMc01184 0.60 -0.3 1,748,077 - SMc01184 0.60 +0.3 1,748,234 + SMc01184 0.70 -1.1 1,748,235 - SMc01184 0.70 +0.7 1,748,235 - SMc01184 0.70 -0.3 1,748,325 + SMc01184 0.76 -0.5 1,748,326 - SMc01184 0.76 -0.2 1,748,326 - SMc01184 0.76 +0.4 1,748,380 - SMc01184 0.79 -1.3 1,748,380 - SMc01184 0.79 +1.5 1,748,442 + SMc01184 0.83 -2.4 1,748,484 + SMc01184 0.86 -0.6 1,748,512 + SMc01184 0.88 +0.7 1,748,537 + SMc01184 0.90 +0.9 1,748,538 - SMc01184 0.90 -0.3 1,748,538 - SMc01184 0.90 -0.3 1,748,620 - +0.1 1,748,620 - -0.1 1,748,694 + -0.1 1,748,752 - +0.1 1,748,805 + -0.8 1,748,806 - +1.0 1,748,861 + +0.1 1,748,862 - +0.5 1,748,862 - +0.1 1,748,862 - -1.4 1,748,862 - +0.1 1,748,886 - SMc01244 0.11 +0.9 1,748,886 - SMc01244 0.11 -0.3 1,748,886 - SMc01244 0.11 +0.8 1,749,015 - -0.9 1,749,150 + +0.5 1,749,150 + -0.2 1,749,163 - -0.8 1,749,197 + +0.7 1,749,225 + +0.4 1,749,225 + +0.3 1,749,226 - -0.1 1,749,235 + +0.4 1,749,285 - -0.1 1,749,668 + SMc01183 0.30 -0.3 1,749,860 - SMc01183 0.57 +1.7
Or see this region's nucleotide sequence