Strain Fitness in Sinorhizobium meliloti 1021 around SMc01244

Experiment: 3-octanone 2.655166667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01184 and SMc01244 are separated by 181 nucleotidesSMc01244 and SMc01183 are separated by 498 nucleotides SMc01184: SMc01184 - hypothetical protein, at 1,747,158 to 1,748,696 SMc01184 SMc01244: SMc01244 - tRNA-Ala, at 1,748,878 to 1,748,953 SMc01244 SMc01183: SMc01183 - LexA repressor, at 1,749,452 to 1,750,168 SMc01183 Position (kb) 1748 1749Strain fitness (log2 ratio) -2 -1 0 1at 1748.009 kb on + strand, within SMc01184at 1748.010 kb on - strand, within SMc01184at 1748.076 kb on + strand, within SMc01184at 1748.076 kb on - strand, within SMc01184at 1748.077 kb on - strand, within SMc01184at 1748.234 kb on + strand, within SMc01184at 1748.235 kb on - strand, within SMc01184at 1748.235 kb on - strand, within SMc01184at 1748.325 kb on + strand, within SMc01184at 1748.326 kb on - strand, within SMc01184at 1748.326 kb on - strand, within SMc01184at 1748.380 kb on - strand, within SMc01184at 1748.380 kb on - strand, within SMc01184at 1748.442 kb on + strand, within SMc01184at 1748.484 kb on + strand, within SMc01184at 1748.512 kb on + strand, within SMc01184at 1748.537 kb on + strand, within SMc01184at 1748.538 kb on - strand, within SMc01184at 1748.538 kb on - strand, within SMc01184at 1748.620 kb on - strandat 1748.620 kb on - strandat 1748.694 kb on + strandat 1748.752 kb on - strandat 1748.805 kb on + strandat 1748.806 kb on - strandat 1748.861 kb on + strandat 1748.862 kb on - strandat 1748.862 kb on - strandat 1748.862 kb on - strandat 1748.862 kb on - strandat 1748.886 kb on - strand, within SMc01244at 1748.886 kb on - strand, within SMc01244at 1748.886 kb on - strand, within SMc01244at 1749.015 kb on - strandat 1749.150 kb on + strandat 1749.150 kb on + strandat 1749.163 kb on - strandat 1749.197 kb on + strandat 1749.225 kb on + strandat 1749.225 kb on + strandat 1749.226 kb on - strandat 1749.235 kb on + strandat 1749.285 kb on - strandat 1749.668 kb on + strand, within SMc01183at 1749.860 kb on - strand, within SMc01183

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM
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1,748,009 + SMc01184 0.55 -0.3
1,748,010 - SMc01184 0.55 -0.7
1,748,076 + SMc01184 0.60 -1.2
1,748,076 - SMc01184 0.60 -0.3
1,748,077 - SMc01184 0.60 +0.3
1,748,234 + SMc01184 0.70 -1.1
1,748,235 - SMc01184 0.70 +0.7
1,748,235 - SMc01184 0.70 -0.3
1,748,325 + SMc01184 0.76 -0.5
1,748,326 - SMc01184 0.76 -0.2
1,748,326 - SMc01184 0.76 +0.4
1,748,380 - SMc01184 0.79 -1.3
1,748,380 - SMc01184 0.79 +1.5
1,748,442 + SMc01184 0.83 -2.4
1,748,484 + SMc01184 0.86 -0.6
1,748,512 + SMc01184 0.88 +0.7
1,748,537 + SMc01184 0.90 +0.9
1,748,538 - SMc01184 0.90 -0.3
1,748,538 - SMc01184 0.90 -0.3
1,748,620 - +0.1
1,748,620 - -0.1
1,748,694 + -0.1
1,748,752 - +0.1
1,748,805 + -0.8
1,748,806 - +1.0
1,748,861 + +0.1
1,748,862 - +0.5
1,748,862 - +0.1
1,748,862 - -1.4
1,748,862 - +0.1
1,748,886 - SMc01244 0.11 +0.9
1,748,886 - SMc01244 0.11 -0.3
1,748,886 - SMc01244 0.11 +0.8
1,749,015 - -0.9
1,749,150 + +0.5
1,749,150 + -0.2
1,749,163 - -0.8
1,749,197 + +0.7
1,749,225 + +0.4
1,749,225 + +0.3
1,749,226 - -0.1
1,749,235 + +0.4
1,749,285 - -0.1
1,749,668 + SMc01183 0.30 -0.3
1,749,860 - SMc01183 0.57 +1.7

Or see this region's nucleotide sequence