Experiment: 3-octanone 2.655166667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0990 and SMa0992 are separated by 67 nucleotides SMa0992 and SMa5007 are separated by 56 nucleotides SMa5007 and SMa0995 are separated by 524 nucleotides
SMa0990: SMa0990 - hypothetical protein, at 549,348 to 549,827
SMa0990
SMa0992: SMa0992 - hypothetical protein, at 549,895 to 550,287
SMa0992
SMa5007: SMa5007 - transcriptional regulator, at 550,344 to 550,724
SMa5007
SMa0995: SMa0995 - TRm5 transposase, at 551,249 to 552,481
SMa0995
Position (kb) 549
550
551 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 548.919 kb on - strand at 548.919 kb on - strand at 549.238 kb on + strand at 549.238 kb on + strand at 549.238 kb on + strand at 549.239 kb on - strand at 549.330 kb on + strand at 549.331 kb on - strand at 549.331 kb on - strand at 549.331 kb on - strand at 549.627 kb on + strand, within SMa0990 at 549.661 kb on + strand, within SMa0990 at 549.734 kb on + strand, within SMa0990 at 549.734 kb on + strand, within SMa0990 at 549.735 kb on - strand, within SMa0990 at 549.753 kb on + strand, within SMa0990 at 549.754 kb on - strand, within SMa0990 at 549.821 kb on - strand at 549.821 kb on - strand at 550.008 kb on + strand, within SMa0992 at 550.241 kb on - strand, within SMa0992 at 550.241 kb on - strand, within SMa0992 at 550.281 kb on + strand at 550.282 kb on - strand at 550.285 kb on + strand at 550.286 kb on - strand at 550.286 kb on - strand at 550.286 kb on - strand at 550.295 kb on + strand at 550.296 kb on - strand at 550.339 kb on - strand at 550.398 kb on + strand, within SMa5007 at 550.398 kb on + strand, within SMa5007 at 550.399 kb on - strand, within SMa5007 at 550.399 kb on - strand, within SMa5007 at 550.399 kb on - strand, within SMa5007 at 550.399 kb on - strand, within SMa5007 at 550.498 kb on + strand, within SMa5007 at 550.558 kb on + strand, within SMa5007 at 550.843 kb on - strand at 550.901 kb on - strand at 550.901 kb on - strand at 550.922 kb on - strand at 550.957 kb on - strand at 551.012 kb on - strand at 551.012 kb on - strand at 551.012 kb on - strand at 551.012 kb on - strand at 551.172 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM remove 548,919 - -0.2 548,919 - +1.7 549,238 + +0.4 549,238 + +0.0 549,238 + +0.2 549,239 - +0.0 549,330 + +0.0 549,331 - -0.1 549,331 - +0.3 549,331 - -0.6 549,627 + SMa0990 0.58 -0.6 549,661 + SMa0990 0.65 -0.3 549,734 + SMa0990 0.80 +0.1 549,734 + SMa0990 0.80 -1.0 549,735 - SMa0990 0.81 +0.2 549,753 + SMa0990 0.84 +0.3 549,754 - SMa0990 0.85 -0.1 549,821 - -0.8 549,821 - -0.0 550,008 + SMa0992 0.29 +0.3 550,241 - SMa0992 0.88 +0.6 550,241 - SMa0992 0.88 +0.5 550,281 + -0.2 550,282 - -0.1 550,285 + -1.0 550,286 - -0.1 550,286 - +0.5 550,286 - -0.3 550,295 + -0.1 550,296 - -0.5 550,339 - -0.1 550,398 + SMa5007 0.14 +1.7 550,398 + SMa5007 0.14 -0.9 550,399 - SMa5007 0.14 +0.6 550,399 - SMa5007 0.14 -0.4 550,399 - SMa5007 0.14 -0.1 550,399 - SMa5007 0.14 +0.0 550,498 + SMa5007 0.40 +0.3 550,558 + SMa5007 0.56 -2.9 550,843 - +0.3 550,901 - +0.6 550,901 - +0.1 550,922 - -0.1 550,957 - +0.3 551,012 - +0.4 551,012 - +0.5 551,012 - +0.1 551,012 - +1.7 551,172 - +0.1
Or see this region's nucleotide sequence