Experiment: 3-octanone 2.655166667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0485 and SMa0486 are separated by 64 nucleotides SMa0486 and SMa0489 are separated by 147 nucleotides SMa0489 and SMa0492 are separated by 11 nucleotides
SMa0485: SMa0485 - threonine synthase, at 264,485 to 265,939
SMa0485
SMa0486: SMa0486 - ornithine cyclodeaminase, at 266,004 to 266,954
SMa0486
SMa0489: SMa0489 - ABC transporter ATP-binding protein, at 267,102 to 267,869
SMa0489
SMa0492: SMa0492 - ABC transporter permease, at 267,881 to 268,564
SMa0492
Position (kb) 266
267 Strain fitness (log2 ratio) -1
0
1
2 at 265.054 kb on + strand, within SMa0485 at 265.206 kb on + strand, within SMa0485 at 265.212 kb on + strand, within SMa0485 at 265.218 kb on + strand, within SMa0485 at 265.626 kb on - strand, within SMa0485 at 265.628 kb on + strand, within SMa0485 at 265.628 kb on + strand, within SMa0485 at 265.628 kb on + strand, within SMa0485 at 265.629 kb on - strand, within SMa0485 at 265.629 kb on - strand, within SMa0485 at 265.629 kb on - strand, within SMa0485 at 265.629 kb on - strand, within SMa0485 at 265.632 kb on + strand, within SMa0485 at 265.632 kb on + strand, within SMa0485 at 265.633 kb on - strand, within SMa0485 at 265.633 kb on - strand, within SMa0485 at 265.633 kb on - strand, within SMa0485 at 265.633 kb on - strand, within SMa0485 at 265.695 kb on + strand, within SMa0485 at 265.789 kb on + strand, within SMa0485 at 265.924 kb on + strand at 265.925 kb on - strand at 265.925 kb on - strand at 265.929 kb on + strand at 265.929 kb on + strand at 265.929 kb on + strand at 265.930 kb on - strand at 265.930 kb on - strand at 265.994 kb on + strand at 265.994 kb on + strand at 265.995 kb on - strand at 266.082 kb on - strand at 266.121 kb on + strand, within SMa0486 at 266.331 kb on - strand, within SMa0486 at 266.331 kb on - strand, within SMa0486 at 266.405 kb on + strand, within SMa0486 at 266.569 kb on - strand, within SMa0486 at 266.587 kb on + strand, within SMa0486 at 266.782 kb on + strand, within SMa0486 at 266.795 kb on + strand, within SMa0486 at 266.796 kb on - strand, within SMa0486 at 266.866 kb on + strand at 266.925 kb on + strand at 266.926 kb on - strand at 266.926 kb on - strand at 266.926 kb on - strand at 266.957 kb on - strand at 267.042 kb on - strand at 267.095 kb on + strand at 267.202 kb on + strand, within SMa0489 at 267.472 kb on + strand, within SMa0489 at 267.472 kb on + strand, within SMa0489 at 267.473 kb on - strand, within SMa0489 at 267.684 kb on - strand, within SMa0489 at 267.693 kb on - strand, within SMa0489 at 267.693 kb on - strand, within SMa0489 at 267.693 kb on - strand, within SMa0489 at 267.845 kb on + strand at 267.873 kb on + strand at 267.874 kb on - strand at 267.874 kb on - strand at 267.907 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM remove 265,054 + SMa0485 0.39 +0.6 265,206 + SMa0485 0.50 +0.2 265,212 + SMa0485 0.50 +0.3 265,218 + SMa0485 0.50 +0.6 265,626 - SMa0485 0.78 -0.0 265,628 + SMa0485 0.79 -1.1 265,628 + SMa0485 0.79 -1.4 265,628 + SMa0485 0.79 -1.3 265,629 - SMa0485 0.79 -0.3 265,629 - SMa0485 0.79 -0.6 265,629 - SMa0485 0.79 -0.6 265,629 - SMa0485 0.79 -0.8 265,632 + SMa0485 0.79 +0.1 265,632 + SMa0485 0.79 +0.0 265,633 - SMa0485 0.79 +0.8 265,633 - SMa0485 0.79 +0.5 265,633 - SMa0485 0.79 -0.4 265,633 - SMa0485 0.79 +0.6 265,695 + SMa0485 0.83 -0.2 265,789 + SMa0485 0.90 -0.3 265,924 + +0.3 265,925 - -0.4 265,925 - +0.0 265,929 + +0.0 265,929 + -0.3 265,929 + +0.8 265,930 - -1.2 265,930 - +0.2 265,994 + +0.3 265,994 + +0.5 265,995 - -0.0 266,082 - -0.3 266,121 + SMa0486 0.12 +0.1 266,331 - SMa0486 0.34 -0.3 266,331 - SMa0486 0.34 -1.2 266,405 + SMa0486 0.42 -1.4 266,569 - SMa0486 0.59 -0.1 266,587 + SMa0486 0.61 -1.4 266,782 + SMa0486 0.82 -0.8 266,795 + SMa0486 0.83 -0.6 266,796 - SMa0486 0.83 -0.2 266,866 + +0.0 266,925 + -0.6 266,926 - +2.6 266,926 - +0.4 266,926 - -0.6 266,957 - +0.0 267,042 - +0.0 267,095 + -0.3 267,202 + SMa0489 0.13 -0.5 267,472 + SMa0489 0.48 +0.3 267,472 + SMa0489 0.48 -0.4 267,473 - SMa0489 0.48 -0.2 267,684 - SMa0489 0.76 -0.6 267,693 - SMa0489 0.77 +0.0 267,693 - SMa0489 0.77 +0.1 267,693 - SMa0489 0.77 +0.5 267,845 + +0.8 267,873 + -0.1 267,874 - +0.6 267,874 - +0.0 267,907 - -0.1
Or see this region's nucleotide sequence