Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21385

Experiment: 3-octanone 2.655166667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21384 and SM_b21385 are separated by 234 nucleotidesSM_b21385 and SM_b21525 are separated by 45 nucleotides SM_b21384: SM_b21384 - SDR family dehydrogenase, at 1,047,363 to 1,048,106 _b21384 SM_b21385: SM_b21385 - AraC family transcriptional regulator, at 1,048,341 to 1,049,276 _b21385 SM_b21525: SM_b21525 - transcriptional regulator, at 1,049,322 to 1,050,797 _b21525 Position (kb) 1048 1049 1050Strain fitness (log2 ratio) -2 -1 0 1at 1047.515 kb on + strand, within SM_b21384at 1047.516 kb on - strand, within SM_b21384at 1047.516 kb on - strand, within SM_b21384at 1047.516 kb on - strand, within SM_b21384at 1047.517 kb on + strand, within SM_b21384at 1047.518 kb on - strand, within SM_b21384at 1047.518 kb on - strand, within SM_b21384at 1047.530 kb on + strand, within SM_b21384at 1047.625 kb on + strand, within SM_b21384at 1047.625 kb on + strand, within SM_b21384at 1047.625 kb on + strand, within SM_b21384at 1047.625 kb on + strand, within SM_b21384at 1047.626 kb on - strand, within SM_b21384at 1047.655 kb on + strand, within SM_b21384at 1047.674 kb on + strand, within SM_b21384at 1047.674 kb on + strand, within SM_b21384at 1047.675 kb on - strand, within SM_b21384at 1047.779 kb on + strand, within SM_b21384at 1047.854 kb on + strand, within SM_b21384at 1047.855 kb on - strand, within SM_b21384at 1047.855 kb on - strand, within SM_b21384at 1047.864 kb on + strand, within SM_b21384at 1047.950 kb on - strand, within SM_b21384at 1047.950 kb on - strand, within SM_b21384at 1048.006 kb on - strand, within SM_b21384at 1048.127 kb on - strandat 1048.151 kb on + strandat 1048.151 kb on + strandat 1048.152 kb on - strandat 1048.152 kb on - strandat 1048.152 kb on - strandat 1048.152 kb on - strandat 1048.261 kb on + strandat 1048.309 kb on + strandat 1048.310 kb on - strandat 1048.371 kb on + strandat 1048.371 kb on + strandat 1048.371 kb on + strandat 1048.372 kb on - strandat 1048.372 kb on - strandat 1048.412 kb on + strandat 1048.413 kb on - strandat 1048.413 kb on - strandat 1048.463 kb on - strand, within SM_b21385at 1048.463 kb on - strand, within SM_b21385at 1048.463 kb on - strand, within SM_b21385at 1048.473 kb on + strand, within SM_b21385at 1048.519 kb on + strand, within SM_b21385at 1048.519 kb on + strand, within SM_b21385at 1048.520 kb on - strand, within SM_b21385at 1048.541 kb on - strand, within SM_b21385at 1048.541 kb on - strand, within SM_b21385at 1048.545 kb on + strand, within SM_b21385at 1048.545 kb on + strand, within SM_b21385at 1048.546 kb on - strand, within SM_b21385at 1048.623 kb on + strand, within SM_b21385at 1048.623 kb on + strand, within SM_b21385at 1048.688 kb on + strand, within SM_b21385at 1048.688 kb on + strand, within SM_b21385at 1048.688 kb on + strand, within SM_b21385at 1048.839 kb on + strand, within SM_b21385at 1048.840 kb on - strand, within SM_b21385at 1048.840 kb on - strand, within SM_b21385at 1048.899 kb on + strand, within SM_b21385at 1048.899 kb on + strand, within SM_b21385at 1048.899 kb on + strand, within SM_b21385at 1048.899 kb on + strand, within SM_b21385at 1048.900 kb on - strand, within SM_b21385at 1048.900 kb on - strand, within SM_b21385at 1048.900 kb on - strand, within SM_b21385at 1048.945 kb on - strand, within SM_b21385at 1048.945 kb on - strand, within SM_b21385at 1049.050 kb on - strand, within SM_b21385at 1049.136 kb on + strand, within SM_b21385at 1049.167 kb on - strand, within SM_b21385at 1049.274 kb on + strandat 1049.274 kb on + strandat 1049.275 kb on - strandat 1049.275 kb on - strandat 1049.323 kb on + strandat 1049.618 kb on - strand, within SM_b21525at 1049.618 kb on - strand, within SM_b21525at 1049.618 kb on - strand, within SM_b21525at 1049.650 kb on + strand, within SM_b21525at 1049.651 kb on - strand, within SM_b21525at 1049.651 kb on - strand, within SM_b21525at 1049.767 kb on + strand, within SM_b21525at 1049.815 kb on + strand, within SM_b21525at 1049.815 kb on + strand, within SM_b21525at 1049.815 kb on + strand, within SM_b21525at 1049.907 kb on + strand, within SM_b21525at 1049.908 kb on - strand, within SM_b21525at 1050.257 kb on + strand, within SM_b21525at 1050.257 kb on + strand, within SM_b21525at 1050.258 kb on - strand, within SM_b21525at 1050.259 kb on + strand, within SM_b21525at 1050.259 kb on + strand, within SM_b21525at 1050.259 kb on + strand, within SM_b21525at 1050.260 kb on - strand, within SM_b21525at 1050.260 kb on - strand, within SM_b21525at 1050.260 kb on - strand, within SM_b21525at 1050.260 kb on - strand, within SM_b21525at 1050.260 kb on - strand, within SM_b21525

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM
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1,047,515 + SM_b21384 0.20 -0.4
1,047,516 - SM_b21384 0.21 -1.8
1,047,516 - SM_b21384 0.21 +0.2
1,047,516 - SM_b21384 0.21 +0.4
1,047,517 + SM_b21384 0.21 +0.7
1,047,518 - SM_b21384 0.21 +0.6
1,047,518 - SM_b21384 0.21 +0.4
1,047,530 + SM_b21384 0.22 -0.5
1,047,625 + SM_b21384 0.35 -0.1
1,047,625 + SM_b21384 0.35 -0.1
1,047,625 + SM_b21384 0.35 -0.3
1,047,625 + SM_b21384 0.35 -0.2
1,047,626 - SM_b21384 0.35 -0.7
1,047,655 + SM_b21384 0.39 +0.1
1,047,674 + SM_b21384 0.42 +0.1
1,047,674 + SM_b21384 0.42 -0.1
1,047,675 - SM_b21384 0.42 +1.7
1,047,779 + SM_b21384 0.56 -0.8
1,047,854 + SM_b21384 0.66 -0.1
1,047,855 - SM_b21384 0.66 -1.0
1,047,855 - SM_b21384 0.66 +0.4
1,047,864 + SM_b21384 0.67 +0.3
1,047,950 - SM_b21384 0.79 +0.6
1,047,950 - SM_b21384 0.79 +0.1
1,048,006 - SM_b21384 0.86 +0.4
1,048,127 - +0.0
1,048,151 + -0.1
1,048,151 + -0.5
1,048,152 - -0.5
1,048,152 - -0.6
1,048,152 - +0.3
1,048,152 - +0.1
1,048,261 + -0.2
1,048,309 + +0.0
1,048,310 - +0.3
1,048,371 + +0.8
1,048,371 + +0.1
1,048,371 + +1.5
1,048,372 - -0.7
1,048,372 - +0.2
1,048,412 + -0.4
1,048,413 - -0.1
1,048,413 - +0.8
1,048,463 - SM_b21385 0.13 +0.3
1,048,463 - SM_b21385 0.13 +0.7
1,048,463 - SM_b21385 0.13 +0.0
1,048,473 + SM_b21385 0.14 -0.3
1,048,519 + SM_b21385 0.19 -0.0
1,048,519 + SM_b21385 0.19 +0.3
1,048,520 - SM_b21385 0.19 -0.2
1,048,541 - SM_b21385 0.21 -0.4
1,048,541 - SM_b21385 0.21 -0.4
1,048,545 + SM_b21385 0.22 +0.4
1,048,545 + SM_b21385 0.22 +0.2
1,048,546 - SM_b21385 0.22 +0.0
1,048,623 + SM_b21385 0.30 -0.1
1,048,623 + SM_b21385 0.30 -0.4
1,048,688 + SM_b21385 0.37 -0.4
1,048,688 + SM_b21385 0.37 +0.1
1,048,688 + SM_b21385 0.37 -0.8
1,048,839 + SM_b21385 0.53 -0.4
1,048,840 - SM_b21385 0.53 +0.1
1,048,840 - SM_b21385 0.53 -1.2
1,048,899 + SM_b21385 0.60 +0.1
1,048,899 + SM_b21385 0.60 +0.1
1,048,899 + SM_b21385 0.60 -0.5
1,048,899 + SM_b21385 0.60 -0.0
1,048,900 - SM_b21385 0.60 -1.2
1,048,900 - SM_b21385 0.60 -1.0
1,048,900 - SM_b21385 0.60 +1.4
1,048,945 - SM_b21385 0.65 -0.2
1,048,945 - SM_b21385 0.65 -0.7
1,049,050 - SM_b21385 0.76 -0.2
1,049,136 + SM_b21385 0.85 -0.4
1,049,167 - SM_b21385 0.88 -0.4
1,049,274 + +1.2
1,049,274 + +0.1
1,049,275 - +0.2
1,049,275 - +1.7
1,049,323 + -0.1
1,049,618 - SM_b21525 0.20 +0.2
1,049,618 - SM_b21525 0.20 +0.2
1,049,618 - SM_b21525 0.20 -0.0
1,049,650 + SM_b21525 0.22 -1.2
1,049,651 - SM_b21525 0.22 -0.2
1,049,651 - SM_b21525 0.22 -0.1
1,049,767 + SM_b21525 0.30 +0.1
1,049,815 + SM_b21525 0.33 -0.2
1,049,815 + SM_b21525 0.33 +0.4
1,049,815 + SM_b21525 0.33 -0.2
1,049,907 + SM_b21525 0.40 +0.2
1,049,908 - SM_b21525 0.40 +0.0
1,050,257 + SM_b21525 0.63 -0.5
1,050,257 + SM_b21525 0.63 +1.7
1,050,258 - SM_b21525 0.63 -0.2
1,050,259 + SM_b21525 0.63 -0.1
1,050,259 + SM_b21525 0.63 +0.3
1,050,259 + SM_b21525 0.63 -0.3
1,050,260 - SM_b21525 0.64 +0.1
1,050,260 - SM_b21525 0.64 -0.9
1,050,260 - SM_b21525 0.64 -0.0
1,050,260 - SM_b21525 0.64 -0.7
1,050,260 - SM_b21525 0.64 -0.8

Or see this region's nucleotide sequence